ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd17h21 |
|---|---|
| Clone Library Name | barley_pub |
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 37.0 bits (84), Expect = 0.086 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Frame = -2 Query: 718 EQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKCQ-HHKVPARKKQCV 542 + C Q C + + R + ++ + D Q + C +CQ + P RK+QCV Sbjct: 85 QDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKE-CQQRCQWQEQRPERKQQCV 143 Query: 541 DECHRREHHHPSRAACERKCSHWRDPTRKE 452 EC + P + E K WR+ +E Sbjct: 144 KECREQYQEDPWKGERENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 6.2 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = -2 Query: 595 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 437 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 436 C 434 C Sbjct: 146 C 146
>5NT1B_MOUSE (Q91YE9) Cytosolic 5'-nucleotidase 1B (EC 3.1.3.5) (Cytosolic| 5'-nucleotidase IB) (cN1B) (cN-IB) (Autoimmune infertility-related protein) Length = 573 Score = 36.2 bits (82), Expect = 0.15 Identities = 24/78 (30%), Positives = 36/78 (46%) Frame = +1 Query: 517 DAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPSAWGRSMTSSPPPTFEVEGRSA 696 +AP T RT+S+SP ++ +TS S + P + + S PP E E S Sbjct: 89 EAPNSSTTSRTSSASPSQHETSPPPQTSEKSSTQQTPQNRPITQLESQPPTPPETEPNSR 148 Query: 697 CTAARTVPXLAGSLQWLH 750 T+A+ GS W+H Sbjct: 149 RTSAK---MYTGSDPWVH 163
>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)| Length = 1426 Score = 36.2 bits (82), Expect = 0.15 Identities = 28/89 (31%), Positives = 37/89 (41%) Frame = +1 Query: 454 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 633 PSL S G+TSS KPP P P T +S L +V + G PPPP Sbjct: 924 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGNVESGG---------PPPP- 973 Query: 634 AWGRSMTSSPPPTFEVEGRSACTAARTVP 720 T+S P + + G + T+P Sbjct: 974 ------TASQPASVNIPGSLPSSTPYTMP 996
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 34.3 bits (77), Expect = 0.56 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Frame = -2 Query: 718 EQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKCQHH-----KVPARK 554 E+C Q+C + + R K E + Q + +CQ H + P RK Sbjct: 88 EECQQECRQQEERQRP------QCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERK 141 Query: 553 KQCVDECHRREHHHPSRAACERK 485 +QCV EC R +P R E + Sbjct: 142 QQCVRECRERYQENPWRREREEE 164
>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3| Length = 299 Score = 33.9 bits (76), Expect = 0.73 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +1 Query: 448 TVPSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPP 627 T P S L+ G T+S PP + P + P ++ T T + PPP Sbjct: 122 TRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPP 181 Query: 628 PSAWGRSMTSSPPP 669 P + T++PPP Sbjct: 182 PPP---ATTTAPPP 192
>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3| Length = 299 Score = 33.9 bits (76), Expect = 0.73 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +1 Query: 448 TVPSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPP 627 T P S L+ G T+S PP + P + P ++ T T + PPP Sbjct: 122 TRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPP 181 Query: 628 PSAWGRSMTSSPPP 669 P + T++PPP Sbjct: 182 PPP---ATTTAPPP 192
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 33.5 bits (75), Expect = 0.95 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +1 Query: 454 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 633 PSL S G+TSS KPP P P T +S L V + G PPPP+ Sbjct: 923 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGG---------PPPPT 973 Query: 634 A 636 A Sbjct: 974 A 974
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 33.1 bits (74), Expect = 1.2 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Frame = -2 Query: 652 SSSAPTPKEVEVDDQSNDS--------CDHKC--QHHKVPARKKQCVDECHRREHHHP 509 S+ +PTP V D+ N S DH +HH P+ +Q H ++HHHP Sbjct: 252 SALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTEHHAPPSHPQQ--QHPHHQQHHHP 307
>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)| Length = 367 Score = 32.7 bits (73), Expect = 1.6 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +2 Query: 74 SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 250 S CG+H T+ ++ KG +H A F +C CK + FA++ K R + Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210
>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C| suppressor SKC1) Length = 1155 Score = 32.7 bits (73), Expect = 1.6 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -2 Query: 643 APTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKC-SHWRD 467 +PT K++ ++D + + C P++K+ V H R+H PS + + SH D Sbjct: 112 SPTNKKISINDSTRQDKGNSCTTTSSPSQKRSNVLLPHVRKHSSPSLLSFSKNSGSHMGD 171 Query: 466 PTR 458 P + Sbjct: 172 PNQ 174
>ACH91_ONCMY (Q8JFN7) Neuronal acetylcholine receptor protein, alpha-9-I subunit| precursor (Nicotinic acetylcholine receptor subunit alpha 9-I) (NACHR alpha 9-I) Length = 572 Score = 32.3 bits (72), Expect = 2.1 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -2 Query: 655 MSSSAPTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSH 476 ++ P PKE ++ S +C C HHK Q + C R + RA C K + Sbjct: 487 LNEPLPYPKEKHLNPASAPACSCPCPHHKQVVYNIQYIANCFREQ-----RATC-AKGAE 540 Query: 475 WR 470 W+ Sbjct: 541 WK 542
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 32.3 bits (72), Expect = 2.1 Identities = 13/56 (23%), Positives = 26/56 (46%) Frame = -2 Query: 595 CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 428 C+ + + K A KK+C +E +RE + C ++ T K++C + + Sbjct: 1112 CEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166 Score = 31.2 bits (69), Expect = 4.7 Identities = 14/65 (21%), Positives = 28/65 (43%) Frame = -2 Query: 622 EVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCV 443 E + C+ + + K A KKQC +E ++E + CE ++ K++C Sbjct: 1087 EKEAAEKKQCEERAKKLKEAAEKKQC-EERAKKEKEAAEKKRCEEAAKREKEAAEKKKCA 1145 Query: 442 QTCMR 428 + + Sbjct: 1146 EAAKK 1150
>PC11Y_HUMAN (Q9BZA8) Protocadherin-11 Y-linked precursor (Protocadherin-11)| (Protocadherin-22) (Protocadherin on the Y chromosome) (PCDH-Y) (Protocadherin prostate cancer) (Protocadherin-PC) Length = 1340 Score = 31.6 bits (70), Expect = 3.6 Identities = 17/78 (21%), Positives = 28/78 (35%) Frame = -2 Query: 763 LREESVAIXETRPXKEQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQSNDSCDHK 584 L++E + C Q+C+ YG W ++ S+ + + S Sbjct: 1115 LKKEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQAS 1174 Query: 583 CQHHKVPARKKQCVDECH 530 QHH P Q + CH Sbjct: 1175 TQHHSPPV--TQTIVLCH 1190
>PC11X_PONPY (Q6WXV7) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 31.2 bits (69), Expect = 4.7 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Frame = -2 Query: 769 GVLREESVAIXET-RPXKEQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQSNDSC 593 G+ + + + T + C Q+C+ YG W ++ S+ + + S Sbjct: 1119 GLKKAAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLS 1178 Query: 592 DHKCQHHKVPARKKQCVDECH 530 QHH P Q + CH Sbjct: 1179 QASTQHHSPPV--TQTIALCH 1197
>PC11X_PANTR (Q71M42) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 31.2 bits (69), Expect = 4.7 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Frame = -2 Query: 769 GVLREESVAIXET-RPXKEQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQSNDSC 593 G+ + + + T + C Q+C+ YG W ++ S+ + + S Sbjct: 1119 GLKKAAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLS 1178 Query: 592 DHKCQHHKVPARKKQCVDECH 530 QHH P Q + CH Sbjct: 1179 QASTQHHSPPV--TQTIALCH 1197
>PC11X_PANPA (Q6WYY1) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 31.2 bits (69), Expect = 4.7 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Frame = -2 Query: 769 GVLREESVAIXET-RPXKEQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQSNDSC 593 G+ + + + T + C Q+C+ YG W ++ S+ + + S Sbjct: 1119 GLKKAAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLS 1178 Query: 592 DHKCQHHKVPARKKQCVDECH 530 QHH P Q + CH Sbjct: 1179 QASTQHHSPPV--TQTIALCH 1197
>FANCJ_MOUSE (Q5SXJ3) Fanconi anemia group J protein homolog (EC 3.6.1.-)| (ATP-dependent RNA helicase BRIP1) (Protein FACJ) (BRCA1-interacting protein C-terminal helicase 1) (BRCA1-interacting protein 1) (BRCA1-associated C-terminal helicase 1) Length = 1174 Score = 31.2 bits (69), Expect = 4.7 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 11/127 (8%) Frame = -2 Query: 787 HHHPKQGVLREESVAIXETRPXKEQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQ 608 HH +G+L + Q + +C+R+ W A+ + VDD+ Sbjct: 806 HHSKSRGLLPGRQWYEIQAYRALNQALGRCIRH---KNDWGALIL-----------VDDR 851 Query: 607 SNDSCDH-----------KCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPT 461 N++ + + QHH A + + E RR +R+ + KC+ +PT Sbjct: 852 FNNNPNRYISGLSKWVRQQIQHHSSFASALESLTEFSRRHQKVTNRSKKDEKCTKDNEPT 911 Query: 460 RKERCVQ 440 + C++ Sbjct: 912 LEVACLE 918
>VTS1_SCHPO (Q9P6R7) Protein vts1| Length = 713 Score = 30.8 bits (68), Expect = 6.2 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 17/85 (20%) Frame = +1 Query: 559 SPELYDVGTCGRTSRCSDHRPPPP--------SAWGRSMTSSP---------PPTFEVEG 687 SP L D + R S S PPPP S R + P P EG Sbjct: 351 SPHLNDESSRSRWSNISYSPPPPPPPPELLNHSPKSRPLGDKPYLFYRNNQIGPRTRTEG 410 Query: 688 RSACTAARTVPXLAGSLQWLHFPLA 762 RS+ T + P L+ SL++ H P A Sbjct: 411 RSSITEGK--PFLSSSLRFEHVPSA 433
>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein| (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C homolog) Length = 1288 Score = 30.4 bits (67), Expect = 8.1 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +1 Query: 580 GTCGRTSRCSDHRPPPPSAWGRSMTSSP-PPTFEVEGRSACTAART 714 GT T+R + PPPPS G S + P PP+ E S TAA T Sbjct: 5 GTQPSTARRREEGPPPPSPDGASSDAEPEPPSGRTE--SPATAAET 48
>PC11X_GORGO (Q6X862) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 30.4 bits (67), Expect = 8.1 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Frame = -2 Query: 769 GVLREESVAIXET-RPXKEQCVQQCMRYGLQPRTWAAVTMSSSAPTPKEVEVDDQSNDSC 593 G+ + + + T + C Q+C+ YG W ++ S+ + S Sbjct: 1119 GLKKAAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSLQAQASALCHSPPLS 1178 Query: 592 DHKCQHHKVPARKKQCVDECH 530 QHH P Q + CH Sbjct: 1179 QASTQHHSPPV--TQTIALCH 1197
>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11| Length = 319 Score = 30.4 bits (67), Expect = 8.1 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +2 Query: 2 HIHIHITLHMXCIHTRTHTHAAL 70 H HIH + H+ CIHT T TH + Sbjct: 72 HTHIHASTHV-CIHTHTFTHLCI 93
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 30.4 bits (67), Expect = 8.1 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +3 Query: 117 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 272 +E E SS+ LS+ RGI +S S+++ PLP + + IYRS + + Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169
>CI055_HUMAN (Q5VZ89) Protein C9orf55| Length = 1620 Score = 30.4 bits (67), Expect = 8.1 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +1 Query: 613 HRPPPPSAWGRSMTSSPPPTFEVEGRSACTAA 708 H P P AWG S+ P F+V R + T + Sbjct: 683 HSPTEPPAWGSSIVKVPSGIFDVNSRKSSTGS 714
>JAG2_HUMAN (Q9Y219) Jagged-2 precursor (Jagged2) (HJ2)| Length = 1238 Score = 30.4 bits (67), Expect = 8.1 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Frame = +1 Query: 529 CGTRPRTASSSPELYDVGTCGRTSRCSDHRP-----PPPSAWGRSMTSSPPPT 672 CG +P + PE C RC + P PP AWG PP T Sbjct: 906 CGWKPCLLAGQPEALSA-QCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPST 957 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,598,015 Number of Sequences: 219361 Number of extensions: 2225502 Number of successful extensions: 7732 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6861 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7639 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 10401601875 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
