ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17h19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-ass... 32 1.3
2KRA48_HUMAN (Q9BYQ9) Keratin-associated protein 4-8 (Keratin-ass... 30 3.9
3KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-ass... 30 3.9
4KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-as... 30 5.1
5VGLM_PTPV (P03517) M polyprotein precursor [Contains: Nonstructu... 30 5.1
6CBPA4_MOUSE (Q6P8K8) Carboxypeptidase A4 precursor (EC 3.4.17.-) 30 6.7
7NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 pr... 29 8.7
8GLMU_LACAC (Q5FMG0) Bifunctional protein glmU [Includes: UDP-N-a... 29 8.7

>KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-associated protein|
           4.5) (Ultrahigh sulfur keratin-associated protein 4.5)
          Length = 186

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 69  CHRRCWQPGCSHPLCVLL*CCK 4
           C   C+QP C HP C +  CC+
Sbjct: 46  CQSVCYQPTCCHPSCCISSCCR 67



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>KRA48_HUMAN (Q9BYQ9) Keratin-associated protein 4-8 (Keratin-associated|
          protein 4.8) (Ultrahigh sulfur keratin-associated
          protein 4.8) (Fragment)
          Length = 114

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 69 CHRRCWQPGCSHPLCVLL*CCK 4
          C   C QP C HP C +  CC+
Sbjct: 9  CQSVCCQPTCCHPSCCISSCCR 30



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 69  CHRRCWQPGCSHPLCVLL*CCK 4
           C   C QP C HP C +  CC+
Sbjct: 44  CQSVCCQPTCCHPSCSISSCCR 65



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>KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-associated protein|
           4.7) (Ultrahigh sulfur keratin-associated protein 4.7)
          Length = 210

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 69  CHRRCWQPGCSHPLCVLL*CCK 4
           C   C QP C HP C +  CC+
Sbjct: 100 CQSVCCQPTCCHPSCCISSCCR 121



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>KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-associated|
           protein 4.14) (Ultrahigh sulfur keratin-associated
           protein 4.14)
          Length = 195

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 69  CHRRCWQPGCSHPLCVLL*CCK 4
           C   C QP C HP C +  CC+
Sbjct: 125 CQSVCCQPTCCHPSCSISSCCR 146



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>VGLM_PTPV (P03517) M polyprotein precursor [Contains: Nonstructural protein|
           NS-M; Glycoprotein G1; Glycoprotein G2]
          Length = 1313

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 306 GIIALLKWDLMCHIFPTSAVSIVHTVSYCPRLDGCKTEKCL 184
           G++A +   +  H+  TS  + VH V  CP  D C    CL
Sbjct: 651 GLLASVGGRIGIHLSHTSDSASVHMVVVCPPRDSCAAHNCL 691



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>CBPA4_MOUSE (Q6P8K8) Carboxypeptidase A4 precursor (EC 3.4.17.-)|
          Length = 420

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +3

Query: 234 YVQCSQPMWGKCDTLNPILRELLCPSVDPNANKNEKSHRQNWQDHACCE 380
           Y Q    +W K  + NP  R   C   DPN N N     +   D+ C E
Sbjct: 229 YTQSQNRLWRKTRSRNPGSR---CVGADPNRNWNASFAGEGTSDNPCSE 274



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>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2321

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 219  GSKTQYVQCSQPMWG-KCDTLNPILRELLCP 308
            G  T    C+QP WG +C+ +    REL CP
Sbjct: 1269 GGLTFTCHCAQPFWGPRCERVARSCRELQCP 1299



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>GLMU_LACAC (Q5FMG0) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 459

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 485 NSLTRLRKTAEKSDKENKQECGPQSHVR 402
           N++T    T EKS+ E+  + GP SH+R
Sbjct: 305 NNVTVTSSTIEKSEMEDNTDIGPNSHLR 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,507,259
Number of Sequences: 219361
Number of extensions: 1377317
Number of successful extensions: 4049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4040
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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