>ref|XM_480192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2829

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 426  ctcctgcttgttctccttgtcgcttttctctgctgtcttccgcagcctc 474
            |||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 2165 ctcctgcttgttctccttgtcgcttccctctgctgtcttccgcagcctc 2117

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                                
Query: 426     ctcctgcttgttctccttgtcgcttttctctgctgtcttccgcagcctc 474
               |||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 3383350 ctcctgcttgttctccttgtcgcttccctctgctgtcttccgcagcctc 3383398

>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498E12
          Length = 153523

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                              
Query: 426   ctcctgcttgttctccttgtcgcttttctctgctgtcttccgcagcctc 474
             |||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 16769 ctcctgcttgttctccttgtcgcttccctctgctgtcttccgcagcctc 16817

>dbj|AK065294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N10, full
            insert sequence
          Length = 2830

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 426  ctcctgcttgttctccttgtcgcttttctctgctgtcttccgcagcctc 474
            |||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 2165 ctcctgcttgttctccttgtcgcttccctctgctgtcttccgcagcctc 2117

>gb|BT017266.1| Zea mays clone EL01N0310A08.c mRNA sequence
          Length = 1311

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                       
Query: 378 gaagcctcccctcttccttggtgctctcacatgtgactggggaccacactcctgcttgtt 437
           |||||||||| ||| | ||||||||||||| |||| || | ||| || ||||||||||  
Sbjct: 776 gaagcctcccttctgcattggtgctctcacgtgtggctcgagacaactctcctgcttgac 717

                                                
Query: 438 ctccttgtcgcttttctctgctgtcttccgcagcctc 474
            ||||||| ||||| ||| |  |||||||||| ||||
Sbjct: 716 atccttgttgctttcctcagaagtcttccgcaacctc 680

>emb|BX324218.7| Zebrafish DNA sequence from clone CH211-236L6 in linkage group 2,
            complete sequence
          Length = 153650

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 259  ggggaaaatgtgacacattaaa 280
            ||||||||||||||||||||||
Sbjct: 3383 ggggaaaatgtgacacattaaa 3362

>gb|AY104064.1| Zea mays PCO115996 mRNA sequence
          Length = 1509

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 378 gaagcctcccctcttccttggtgctctcacatgtgactggggaccacactcctgcttg 435
           |||||||||| ||| | ||||||||||||| |||| || | ||| || ||||||||||
Sbjct: 947 gaagcctcccttctgcattggtgctctcacgtgtggctcgagacaactctcctgcttg 890

>gb|AC024258.9| Homo sapiens chromosome 10 clone RP11-297N15, complete sequence
          Length = 160658

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 537    aaaaccaacatcataaaggaa 557
              |||||||||||||||||||||
Sbjct: 119337 aaaaccaacatcataaaggaa 119317

>ref|XM_681508.1| PREDICTED: Danio rerio similar to NHS-like 1 (LOC558308), mRNA
          Length = 5056

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 220  gcagtaagacacagtatgtac 240
            |||||||||||||||||||||
Sbjct: 1627 gcagtaagacacagtatgtac 1647

>emb|AL929182.4| Zebrafish DNA sequence from clone CH211-195E3 in linkage group 20,
             complete sequence
          Length = 225515

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   gcagtaagacacagtatgtac 240
             |||||||||||||||||||||
Sbjct: 77338 gcagtaagacacagtatgtac 77318

>emb|CR955012.2| Medicago truncatula chromosome 5 clone mth2-84f14, COMPLETE SEQUENCE
          Length = 117704

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    gtgacagaaaaacgaaaacta 84
             |||||||||||||||||||||
Sbjct: 96866 gtgacagaaaaacgaaaacta 96886

>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   cagtatgtacaatgctcaca 250
             ||||||||||||||||||||
Sbjct: 31776 cagtatgtacaatgctcaca 31757

>gb|AC144860.2| Mus musculus BAC clone RP24-133K9 from chromosome 17, complete sequence
          Length = 170928

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 94    aagtcacaggcatctacagcaaca 117
             ||||||||| ||||||||||||||
Sbjct: 56026 aagtcacagtcatctacagcaaca 56049

>gb|AC129080.6| Mus musculus BAC clone RP24-226L20 from chromosome 5, complete sequence
          Length = 156781

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 514   tcatcagcatgactgttgccagca 537
             |||||||||| |||||||||||||
Sbjct: 88347 tcatcagcatcactgttgccagca 88370

>ref|XM_752864.1| Ustilago maydis 521 hypothetical protein (UM01810.1) partial mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 432 cttgttctccttgtcgcttt 451
           ||||||||||||||||||||
Sbjct: 330 cttgttctccttgtcgcttt 311

>ref|XM_381011.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00835.1)
            partial mRNA
          Length = 2046

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 327  aacaagaacgagaagagccaccga 350
            |||||||||||| |||||||||||
Sbjct: 1052 aacaagaacgagcagagccaccga 1075

>gb|AC112532.5| Rattus norvegicus 9 BAC CH230-20N15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 138561

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   ggggaacaaacacttctctg 197
             ||||||||||||||||||||
Sbjct: 78171 ggggaacaaacacttctctg 78190

>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1
          Length = 206420

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 438    ctccttgtcgcttttctctgctgtcttc 465
              |||||||||||||| ||||||| |||||
Sbjct: 185839 ctccttgtcgctttcctctgctttcttc 185866

>emb|BX883052.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 11/11
          Length = 349381

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    tgccaacacctgcggtgacagaaa 73
             |||||||||||||| |||||||||
Sbjct: 39315 tgccaacacctgcgttgacagaaa 39338

>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86
          Length = 198780

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 438   ctccttgtcgcttttctctgctgtcttc 465
             |||||||||||||| ||||||| |||||
Sbjct: 69395 ctccttgtcgctttcctctgctttcttc 69368

>emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on chromosome 2, complete
             sequence
          Length = 194065

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   agtatgtacaatgctcacag 251
             ||||||||||||||||||||
Sbjct: 76088 agtatgtacaatgctcacag 76107

>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   cagtatgtacaatgctcaca 250
             ||||||||||||||||||||
Sbjct: 31748 cagtatgtacaatgctcaca 31729


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,776,917
Number of Sequences: 3902068
Number of extensions: 4776917
Number of successful extensions: 92348
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92273
Number of HSP's gapped (non-prelim): 75
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)