Clone Name | rbasd17h17 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 950 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Minus Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 572 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 513 Query: 354 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 392 |||||| ||||| ||| |||||||||||||||||||||| Sbjct: 512 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 474 Score = 54.0 bits (27), Expect = 7e-04 Identities = 91/111 (81%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatcacacgagcttttgg 612 |||||| ||||||||||||||| | ||||| ||| ||||||| || || || || | | Sbjct: 272 ccagaacgcctccacctcctccctcgtcagcgacttgttcctcctcgcaagaactct-gt 214 Query: 613 tgtcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663 | |||||||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct: 213 tctcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 163
>dbj|AK119789.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G12, full insert sequence Length = 972 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Minus Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 605 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 546 Query: 354 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 392 |||||| ||||| ||| |||||||||||||||||||||| Sbjct: 545 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 507 Score = 54.0 bits (27), Expect = 7e-04 Identities = 91/111 (81%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatcacacgagcttttgg 612 |||||| ||||||||||||||| | ||||| ||| ||||||| || || || || | | Sbjct: 305 ccagaacgcctccacctcctccctcgtcagcgacttgttcctcctcgcaagaactct-gt 247 Query: 613 tgtcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663 | |||||||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct: 246 tctcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 196
>dbj|AK065702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P06, full insert sequence Length = 974 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Minus Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 596 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 537 Query: 354 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 392 |||||| ||||| ||| |||||||||||||||||||||| Sbjct: 536 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 498 Score = 54.0 bits (27), Expect = 7e-04 Identities = 91/111 (81%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatcacacgagcttttgg 612 |||||| ||||||||||||||| | ||||| ||| ||||||| || || || || | | Sbjct: 296 ccagaacgcctccacctcctccctcgtcagcgacttgttcctcctcgcaagaactct-gt 238 Query: 613 tgtcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663 | |||||||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct: 237 tctcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 187
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 34429971 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34430030 Query: 354 ctcgttgaggaaggccgagttgctcctcgtccacc 388 |||||| ||||| ||| |||||||||||||||||| Sbjct: 34430031 ctcgttcaggaacgcccagttgctcctcgtccacc 34430065 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Plus Query: 615 tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663 |||||||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct: 34430577 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 34430625 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Plus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599 |||||| || |||||||||||| | ||||| || ||||||||||||| Sbjct: 34436280 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 34436326
>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence Length = 117505 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 96196 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 96137 Query: 354 ctcgttgaggaaggccgagttgctcctcgtccacc 388 |||||| ||||| ||| |||||||||||||||||| Sbjct: 96136 ctcgttcaggaacgcccagttgctcctcgtccacc 96102 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 615 tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663 |||||||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct: 95590 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 95542 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Minus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599 |||||| || |||||||||||| | ||||| || ||||||||||||| Sbjct: 89887 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 89841
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 19723 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 19664 Query: 354 ctcgttgaggaaggccgagttgctcctcgtccacc 388 |||||| ||||| ||| |||||||||||||||||| Sbjct: 19663 ctcgttcaggaacgcccagttgctcctcgtccacc 19629 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 615 tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663 |||||||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct: 19117 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 19069 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Minus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599 |||||| || |||||||||||| | ||||| || ||||||||||||| Sbjct: 13414 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 13368
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 34520443 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34520502 Query: 354 ctcgttgaggaaggccgagttgctcctcgtccacc 388 |||||| ||||| ||| |||||||||||||||||| Sbjct: 34520503 ctcgttcaggaacgcccagttgctcctcgtccacc 34520537 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Plus Query: 615 tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663 |||||||| ||||| || |||||||| || ||||| ||||||||||||| Sbjct: 34521049 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 34521097 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Plus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599 |||||| || |||||||||||| | ||||| || ||||||||||||| Sbjct: 34526752 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 34526798
>gb|AY177888.1| Sorghum bicolor clone BAC IS_91D5 ABA-induced gene, partial sequence Length = 3214 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 343 tcctgcggcggctcgttgaggaaggccgagttgctcctcgtccaccagtcccggc 397 ||||||||||||||||||||||| ||| || |||||| |||||||||||| |||| Sbjct: 1798 tcctgcggcggctcgttgaggaacgcccagctgctccgcgtccaccagtcgcggc 1744 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 624 agaacaggcgaatcccagccggccatgagagaccccatct 663 ||||| ||||| |||||||| ||||||||||||||||||| Sbjct: 1234 agaaccggcgagtcccagccagccatgagagaccccatct 1195 Score = 48.1 bits (24), Expect = 0.043 Identities = 24/24 (100%) Strand = Plus / Minus Query: 295 gcgacgtggaactgcggcgtgtag 318 |||||||||||||||||||||||| Sbjct: 1849 gcgacgtggaactgcggcgtgtag 1826
>ref|XM_470154.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Minus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599 |||||| || |||||||||||| | ||||| || ||||||||||||| Sbjct: 170 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 124
>dbj|AK099709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075N13, full insert sequence Length = 1286 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Minus Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599 |||||| || |||||||||||| | ||||| || ||||||||||||| Sbjct: 340 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 294
>gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163836 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 358 ttgaggaaggccgagttgctcc 379 |||||||||||||||||||||| Sbjct: 75922 ttgaggaaggccgagttgctcc 75901
>gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143759 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 358 ttgaggaaggccgagttgctcc 379 |||||||||||||||||||||| Sbjct: 58926 ttgaggaaggccgagttgctcc 58905
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete sequence Length = 221374 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 644 ggccatgagagaccccatctag 665 |||||||||||||||||||||| Sbjct: 47285 ggccatgagagaccccatctag 47306
>gb|BC103956.1| Homo sapiens transmembrane channel-like 1, mRNA (cDNA clone IMAGE:40011718), partial cds Length = 2275 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 465 acttcctcttcttgagatggatgta 489
>ref|XM_483425.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 ccgtcctggtccggcgccggc 538 ||||||||||||||||||||| Sbjct: 1142 ccgtcctggtccggcgccggc 1122
>ref|XM_528322.1| PREDICTED: Pan troglodytes similar to transmembrane channel-like 1; transmembrane, cochlear expressed, 1 (LOC472952), mRNA Length = 2478 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 560 acttcctcttcttgagatggatgta 584
>ref|NM_138691.2| Homo sapiens transmembrane channel-like 1 (TMC1), mRNA Length = 3201 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 1103 acttcctcttcttgagatggatgta 1127
>ref|XM_541284.2| PREDICTED: Canis familiaris similar to transmembrane channel-like gene family 1 (LOC484168), mRNA Length = 2580 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 701 acttcctcttcttgagatggatgta 725
>gb|BC103955.1| Homo sapiens transmembrane channel-like 1, mRNA (cDNA clone IMAGE:40011715), with apparent retained intron Length = 2479 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 465 acttcctcttcttgagatggatgta 489
>emb|AL591662.6| Human DNA sequence from clone RP11-28P17 on chromosome 9 Contains part of the TMC1 gene for transmembrane cochlear-expressed 1, a ribosomal protein S20 (RPS20) pseudogene and a ribosomal protein S27a (RPS27A) pseudogene, complete sequence Length = 170815 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 157567 acttcctcttcttgagatggatgta 157591
>gb|BC114449.1| Homo sapiens transmembrane channel-like 1, mRNA (cDNA clone IMAGE:40001405), with apparent retained intron Length = 2514 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 603 acttcctcttcttgagatggatgta 627
>dbj|AB154359.1| Aspergillus awamori xyl mRNA for beta-xylosidase, complete cds Length = 3460 Score = 42.1 bits (21), Expect = 2.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 282 ggcgttgccggcggcgacgtggaactgcggcgtgtag 318 ||||| || ||||||||||||||| || ||||||||| Sbjct: 1403 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 1367
>gb|AF108944.1|AF108944 Aspergillus niger beta-xylosidase (XLND) mRNA, complete cds Length = 2508 Score = 42.1 bits (21), Expect = 2.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 282 ggcgttgccggcggcgacgtggaactgcggcgtgtag 318 ||||| || |||||||||||||||||| || |||||| Sbjct: 827 ggcgtcgcgggcggcgacgtggaactggggagtgtag 791
>emb|Z84377.1|ANZ84377 Aspergillus niger xlnD gene Length = 4560 Score = 42.1 bits (21), Expect = 2.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 282 ggcgttgccggcggcgacgtggaactgcggcgtgtag 318 ||||| || ||||||||||||||| || ||||||||| Sbjct: 2122 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 2086
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 665 ggctctagctagctagctagg 685 ||||||||||||||||||||| Sbjct: 27730173 ggctctagctagctagctagg 27730153 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 ccgtcctggtccggcgccggc 538 ||||||||||||||||||||| Sbjct: 26144713 ccgtcctggtccggcgccggc 26144733
>gb|AF417578.1| Homo sapiens transmembrane channel-like protein 1 (TMC1) mRNA, complete cds Length = 3201 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 693 acttcttcttcttgagatggatgta 717 ||||| ||||||||||||||||||| Sbjct: 1103 acttcctcttcttgagatggatgta 1127
>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011H15 Length = 130146 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 665 ggctctagctagctagctagg 685 ||||||||||||||||||||| Sbjct: 127517 ggctctagctagctagctagg 127497
>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1125_C01 Length = 123849 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 665 ggctctagctagctagctagg 685 ||||||||||||||||||||| Sbjct: 63095 ggctctagctagctagctagg 63075
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 ccgtcctggtccggcgccggc 538 ||||||||||||||||||||| Sbjct: 88644 ccgtcctggtccggcgccggc 88664 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,393,973 Number of Sequences: 3902068 Number of extensions: 6393973 Number of successful extensions: 124473 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124137 Number of HSP's gapped (non-prelim): 336 length of query: 765 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 742 effective length of database: 17,143,297,704 effective search space: 12720326896368 effective search space used: 12720326896368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)