ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17h17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470153.1| Oryza sativa (japonica cultivar-group), mRNA 109 1e-20
2dbj|AK119789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
3dbj|AK065702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 3e-18
5gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom... 101 3e-18
6gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ... 101 3e-18
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
8gb|AY177888.1| Sorghum bicolor clone BAC IS_91D5 ABA-induced gen... 70 1e-08
9ref|XM_470154.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.17
10dbj|AK099709.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.17
11gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park C... 44 0.67
12gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell... 44 0.67
13emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 44 0.67
14gb|BC103956.1| Homo sapiens transmembrane channel-like 1, mRNA (... 42 2.7
15ref|XM_483425.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.7
16ref|XM_528322.1| PREDICTED: Pan troglodytes similar to transmemb... 42 2.7
17ref|NM_138691.2| Homo sapiens transmembrane channel-like 1 (TMC1... 42 2.7
18ref|XM_541284.2| PREDICTED: Canis familiaris similar to transmem... 42 2.7
19gb|BC103955.1| Homo sapiens transmembrane channel-like 1, mRNA (... 42 2.7
20emb|AL591662.6| Human DNA sequence from clone RP11-28P17 on chro... 42 2.7
21gb|BC114449.1| Homo sapiens transmembrane channel-like 1, mRNA (... 42 2.7
22dbj|AB154359.1| Aspergillus awamori xyl mRNA for beta-xylosidase... 42 2.7
23gb|AF108944.1|AF108944 Aspergillus niger beta-xylosidase (XLND) ... 42 2.7
24emb|Z84377.1|ANZ84377 Aspergillus niger xlnD gene 42 2.7
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.7
26gb|AF417578.1| Homo sapiens transmembrane channel-like protein 1... 42 2.7
27dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.7
28dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.7
29dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.7

>ref|XM_470153.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 950

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353
           |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 572 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 513

                                                  
Query: 354 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 392
           |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 512 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 474



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 91/111 (81%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatcacacgagcttttgg 612
           |||||| ||||||||||||||| | ||||| |||  ||||||| || || || || | | 
Sbjct: 272 ccagaacgcctccacctcctccctcgtcagcgacttgttcctcctcgcaagaactct-gt 214

                                                              
Query: 613 tgtcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663
           | |||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 213 tctcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 163



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>dbj|AK119789.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G12, full
           insert sequence
          Length = 972

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353
           |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 605 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 546

                                                  
Query: 354 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 392
           |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 545 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 507



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 91/111 (81%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatcacacgagcttttgg 612
           |||||| ||||||||||||||| | ||||| |||  ||||||| || || || || | | 
Sbjct: 305 ccagaacgcctccacctcctccctcgtcagcgacttgttcctcctcgcaagaactct-gt 247

                                                              
Query: 613 tgtcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663
           | |||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 246 tctcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 196



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>dbj|AK065702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P06, full
           insert sequence
          Length = 974

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 294 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353
           |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 596 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 537

                                                  
Query: 354 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 392
           |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 536 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 498



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 91/111 (81%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatcacacgagcttttgg 612
           |||||| ||||||||||||||| | ||||| |||  ||||||| || || || || | | 
Sbjct: 296 ccagaacgcctccacctcctccctcgtcagcgacttgttcctcctcgcaagaactct-gt 238

                                                              
Query: 613 tgtcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663
           | |||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 237 tctcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 187



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                            
Query: 294      ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353
                |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 34429971 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34430030

                                                   
Query: 354      ctcgttgaggaaggccgagttgctcctcgtccacc 388
                |||||| ||||| ||| ||||||||||||||||||
Sbjct: 34430031 ctcgttcaggaacgcccagttgctcctcgtccacc 34430065



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 615      tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663
                |||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 34430577 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 34430625



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 553      ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599
                |||||| || |||||||||||| | ||||| || |||||||||||||
Sbjct: 34436280 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 34436326



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>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete
             sequence
          Length = 117505

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                         
Query: 294   ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353
             |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 96196 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 96137

                                                
Query: 354   ctcgttgaggaaggccgagttgctcctcgtccacc 388
             |||||| ||||| ||| ||||||||||||||||||
Sbjct: 96136 ctcgttcaggaacgcccagttgctcctcgtccacc 96102



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 615   tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663
             |||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 95590 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 95542



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 553   ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599
             |||||| || |||||||||||| | ||||| || |||||||||||||
Sbjct: 89887 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 89841



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>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
             sequence
          Length = 115393

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                         
Query: 294   ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353
             |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 19723 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 19664

                                                
Query: 354   ctcgttgaggaaggccgagttgctcctcgtccacc 388
             |||||| ||||| ||| ||||||||||||||||||
Sbjct: 19663 ctcgttcaggaacgcccagttgctcctcgtccacc 19629



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 615   tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663
             |||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 19117 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 19069



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 553   ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599
             |||||| || |||||||||||| | ||||| || |||||||||||||
Sbjct: 13414 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 13368



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                            
Query: 294      ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 353
                |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 34520443 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34520502

                                                   
Query: 354      ctcgttgaggaaggccgagttgctcctcgtccacc 388
                |||||| ||||| ||| ||||||||||||||||||
Sbjct: 34520503 ctcgttcaggaacgcccagttgctcctcgtccacc 34520537



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 615      tcatcgccgagaacaggcgaatcccagccggccatgagagaccccatct 663
                |||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 34521049 tcatcgccaagaacgggtgaatcccatccagccatcagagaccccatct 34521097



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 553      ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599
                |||||| || |||||||||||| | ||||| || |||||||||||||
Sbjct: 34526752 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 34526798



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>gb|AY177888.1| Sorghum bicolor clone BAC IS_91D5 ABA-induced gene, partial sequence
          Length = 3214

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                   
Query: 343  tcctgcggcggctcgttgaggaaggccgagttgctcctcgtccaccagtcccggc 397
            ||||||||||||||||||||||| ||| || |||||| |||||||||||| ||||
Sbjct: 1798 tcctgcggcggctcgttgaggaacgcccagctgctccgcgtccaccagtcgcggc 1744



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 624  agaacaggcgaatcccagccggccatgagagaccccatct 663
            ||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 1234 agaaccggcgagtcccagccagccatgagagaccccatct 1195



 Score = 48.1 bits (24), Expect = 0.043
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 295  gcgacgtggaactgcggcgtgtag 318
            ||||||||||||||||||||||||
Sbjct: 1849 gcgacgtggaactgcggcgtgtag 1826



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>ref|XM_470154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1131

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599
           |||||| || |||||||||||| | ||||| || |||||||||||||
Sbjct: 170 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 124



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>dbj|AK099709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075N13, full
           insert sequence
          Length = 1286

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 553 ccagaaggcctccacctcctcctttgtcagggaccggttcctcatca 599
           |||||| || |||||||||||| | ||||| || |||||||||||||
Sbjct: 340 ccagaacgcgtccacctcctccctggtcagcgagcggttcctcatca 294



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>gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163836

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 358   ttgaggaaggccgagttgctcc 379
             ||||||||||||||||||||||
Sbjct: 75922 ttgaggaaggccgagttgctcc 75901



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>gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 143759

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 358   ttgaggaaggccgagttgctcc 379
             ||||||||||||||||||||||
Sbjct: 58926 ttgaggaaggccgagttgctcc 58905



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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 644   ggccatgagagaccccatctag 665
             ||||||||||||||||||||||
Sbjct: 47285 ggccatgagagaccccatctag 47306



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>gb|BC103956.1| Homo sapiens transmembrane channel-like 1, mRNA (cDNA clone
           IMAGE:40011718), partial cds
          Length = 2275

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 693 acttcttcttcttgagatggatgta 717
           ||||| |||||||||||||||||||
Sbjct: 465 acttcctcttcttgagatggatgta 489



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>ref|XM_483425.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1449

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 518  ccgtcctggtccggcgccggc 538
            |||||||||||||||||||||
Sbjct: 1142 ccgtcctggtccggcgccggc 1122



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>ref|XM_528322.1| PREDICTED: Pan troglodytes similar to transmembrane channel-like 1;
           transmembrane, cochlear expressed, 1 (LOC472952), mRNA
          Length = 2478

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 693 acttcttcttcttgagatggatgta 717
           ||||| |||||||||||||||||||
Sbjct: 560 acttcctcttcttgagatggatgta 584



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>ref|NM_138691.2| Homo sapiens transmembrane channel-like 1 (TMC1), mRNA
          Length = 3201

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 693  acttcttcttcttgagatggatgta 717
            ||||| |||||||||||||||||||
Sbjct: 1103 acttcctcttcttgagatggatgta 1127



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>ref|XM_541284.2| PREDICTED: Canis familiaris similar to transmembrane channel-like
           gene family 1 (LOC484168), mRNA
          Length = 2580

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 693 acttcttcttcttgagatggatgta 717
           ||||| |||||||||||||||||||
Sbjct: 701 acttcctcttcttgagatggatgta 725



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>gb|BC103955.1| Homo sapiens transmembrane channel-like 1, mRNA (cDNA clone
           IMAGE:40011715), with apparent retained intron
          Length = 2479

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 693 acttcttcttcttgagatggatgta 717
           ||||| |||||||||||||||||||
Sbjct: 465 acttcctcttcttgagatggatgta 489



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>emb|AL591662.6| Human DNA sequence from clone RP11-28P17 on chromosome 9 Contains part of
              the TMC1 gene for transmembrane cochlear-expressed 1, a
              ribosomal protein S20 (RPS20) pseudogene and a ribosomal
              protein S27a (RPS27A) pseudogene, complete sequence
          Length = 170815

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 693    acttcttcttcttgagatggatgta 717
              ||||| |||||||||||||||||||
Sbjct: 157567 acttcctcttcttgagatggatgta 157591



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>gb|BC114449.1| Homo sapiens transmembrane channel-like 1, mRNA (cDNA clone
           IMAGE:40001405), with apparent retained intron
          Length = 2514

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 693 acttcttcttcttgagatggatgta 717
           ||||| |||||||||||||||||||
Sbjct: 603 acttcctcttcttgagatggatgta 627



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>dbj|AB154359.1| Aspergillus awamori xyl mRNA for beta-xylosidase, complete cds
          Length = 3460

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 282  ggcgttgccggcggcgacgtggaactgcggcgtgtag 318
            ||||| || ||||||||||||||| || |||||||||
Sbjct: 1403 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 1367



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>gb|AF108944.1|AF108944 Aspergillus niger beta-xylosidase (XLND) mRNA, complete cds
          Length = 2508

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 282 ggcgttgccggcggcgacgtggaactgcggcgtgtag 318
           ||||| || |||||||||||||||||| || ||||||
Sbjct: 827 ggcgtcgcgggcggcgacgtggaactggggagtgtag 791



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>emb|Z84377.1|ANZ84377 Aspergillus niger xlnD gene
          Length = 4560

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 282  ggcgttgccggcggcgacgtggaactgcggcgtgtag 318
            ||||| || ||||||||||||||| || |||||||||
Sbjct: 2122 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 2086



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 665      ggctctagctagctagctagg 685
                |||||||||||||||||||||
Sbjct: 27730173 ggctctagctagctagctagg 27730153



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 518      ccgtcctggtccggcgccggc 538
                |||||||||||||||||||||
Sbjct: 26144713 ccgtcctggtccggcgccggc 26144733



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>gb|AF417578.1| Homo sapiens transmembrane channel-like protein 1 (TMC1) mRNA,
            complete cds
          Length = 3201

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 693  acttcttcttcttgagatggatgta 717
            ||||| |||||||||||||||||||
Sbjct: 1103 acttcctcttcttgagatggatgta 1127



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>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0011H15
          Length = 130146

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 665    ggctctagctagctagctagg 685
              |||||||||||||||||||||
Sbjct: 127517 ggctctagctagctagctagg 127497



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>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1125_C01
          Length = 123849

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 665   ggctctagctagctagctagg 685
             |||||||||||||||||||||
Sbjct: 63095 ggctctagctagctagctagg 63075



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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 518   ccgtcctggtccggcgccggc 538
             |||||||||||||||||||||
Sbjct: 88644 ccgtcctggtccggcgccggc 88664


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,393,973
Number of Sequences: 3902068
Number of extensions: 6393973
Number of successful extensions: 124473
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124137
Number of HSP's gapped (non-prelim): 336
length of query: 765
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 742
effective length of database: 17,143,297,704
effective search space: 12720326896368
effective search space used: 12720326896368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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