ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17h16 |
|---|---|
| Clone Library Name | barley_pub |
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 43.5 bits (101), Expect = 6e-04 Identities = 30/143 (20%), Positives = 56/143 (39%) Frame = -2 Query: 683 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLN 504 C+ + + K A KKQC +E +E + CE + ++ A K+QC ++ + Sbjct: 1064 CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKK---- 1118 Query: 503 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 324 E+ AE+ C+ + K A KK+C E ++E + Sbjct: 1119 ----------EKEAAEK--------KRCEEAAKREKEAAEKKKCA-EAAKKEKEATEKQK 1159 Query: 323 CERKCSHWRDPTRKERCVQTCMR 255 C ++ K++C + R Sbjct: 1160 CAEAAKKEKEAAEKKKCAEAAKR 1182 Score = 43.5 bits (101), Expect = 6e-04 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Frame = -2 Query: 659 KVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQ------------QCMR 516 K A KK+C E +E ++ CE + ++ A K+QC + QC Sbjct: 976 KRAAEKKKCA-EAAKKEKEAATKKKCEERAKKQKEAAEKKQCEERAKKLKEAAEQKQCEE 1034 Query: 515 YGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHP 336 L E + E +Q C+ + + K A KKQC +E ++E Sbjct: 1035 RAKKLKEAAEKKQCEERAKKLKEAAEQK--QCEERAKKLKEAAEKKQC-EERAKKEKEAA 1091 Query: 335 SRAACERKCSHWRDPTRKERC 273 + CE + ++ K++C Sbjct: 1092 EKKQCEERAKKLKEAAEKKQC 1112 Score = 38.1 bits (87), Expect = 0.027 Identities = 28/144 (19%), Positives = 54/144 (37%) Frame = -2 Query: 686 SCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGL 507 +C + K KK+C +E ++E + CE+ ++ A K++C + Sbjct: 366 ACKELAKKKKEADEKKKC-EEAANKEKKAAEKKKCEKAAKERKEAAEKKKCEE------- 417 Query: 506 NLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRA 327 A + E + C+ ++ K A KK+C E ++E R Sbjct: 418 ---------------AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEKEAAERK 461 Query: 326 ACERKCSHWRDPTRKERCVQTCMR 255 CE + K++C +T + Sbjct: 462 KCEELAKKIKKAAEKKKCEETAKK 485 Score = 37.7 bits (86), Expect = 0.035 Identities = 27/143 (18%), Positives = 52/143 (36%) Frame = -2 Query: 683 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLN 504 C+ + K A KK+C +E +E R CE + A K++C + Sbjct: 575 CEKAAKERKEAAEKKKC-EEAAKKEKEVAERKKCEELAKKIKKAAEKKKCKE-------- 625 Query: 503 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 324 A + E + + C + K A KK+C + ++E + Sbjct: 626 --------------AAKKEKEAAEREKCGELAKKIKKAAEKKKC-KKLAKKEKETAEKKK 670 Query: 323 CERKCSHWRDPTRKERCVQTCMR 255 CE+ ++ K++C + + Sbjct: 671 CEKAAKKRKEAAEKKKCAEAAKK 693 Score = 35.0 bits (79), Expect = 0.22 Identities = 27/143 (18%), Positives = 52/143 (36%) Frame = -2 Query: 683 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLN 504 C + K A KK+C ++ + + CE+ ++ A K++C + + Sbjct: 511 CKKLAKKEKETAEKKKC-EKAAKKRKEAAEKKKCEKAAKKRKEAAEKKKCEKSAKK---- 565 Query: 503 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 324 R A E + C+ + K A KK+C +E ++E R Sbjct: 566 -----------RKEAAEKK-------KCEKAAKERKEAAEKKKC-EEAAKKEKEVAERKK 606 Query: 323 CERKCSHWRDPTRKERCVQTCMR 255 CE + K++C + + Sbjct: 607 CEELAKKIKKAAEKKKCKEAAKK 629 Score = 34.7 bits (78), Expect = 0.29 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 8/151 (5%) Frame = -2 Query: 683 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLN 504 C+ + K A KK+C E +E + CE ++ A +++C + + Sbjct: 671 CEKAAKKRKEAAEKKKCA-EAAKKEKEAAEKKKCEEAAKKEKEAAERKKCEELAKKIKKA 729 Query: 503 LXXXXXXXVIERPHAEEVEVDDQSNDSCDH------KCQH--HKVPARKKQCVDECHRRE 348 + ++ A E + N KC+ K A KK+C E ++E Sbjct: 730 AEKKKCKKLAKKKKAGEKNKLKKGNKKGKKALKEKKKCRELAKKKAAEKKKC-KEAAKKE 788 Query: 347 HHHPSRAACERKCSHWRDPTRKERCVQTCMR 255 + CE+ ++ K++C +T + Sbjct: 789 KEAAEKKKCEKTAKKRKEEAEKKKCEKTAKK 819 Score = 30.4 bits (67), Expect = 5.5 Identities = 25/135 (18%), Positives = 51/135 (37%) Frame = -2 Query: 659 KVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLNLXXXXXXX 480 K A KK+C ++ +A C+ ++ K++C + + Sbjct: 343 KEEAEKKKCAALAKKQKEEDEKKA-CKELAKKKKEADEKKKCEEAANK------------ 389 Query: 479 VIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 300 E+ AE+ + C+ + K A KK+C +E ++E R CE + Sbjct: 390 --EKKAAEKKK--------CEKAAKERKEAAEKKKC-EEAAKKEKEAAERKKCEELAKNI 438 Query: 299 RDPTRKERCVQTCMR 255 + K++C + + Sbjct: 439 KKAAEKKKCKEAAKK 453
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 43.5 bits (101), Expect = 6e-04 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Frame = -2 Query: 653 PARKKQCVDECHSREHHHPSRASCERKCS------------H*RDPARK-EQCVQQCMRY 513 P R + C C + CE C DP R+ E+C Q+C + Sbjct: 38 PKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQ 97 Query: 512 GLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 333 ++R E+ + Q + H Q + P RK+QCV EC R +P Sbjct: 98 EERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPW 157 Query: 332 RAACERK 312 R E + Sbjct: 158 RREREEE 164 Score = 33.1 bits (74), Expect = 0.85 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 8/116 (6%) Frame = -2 Query: 584 CERKCS-H*RDPARKEQCVQQCM-RYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHK 411 C R+C R ++QC + C +YG ++ E + + C + Sbjct: 44 CRRRCEWDTRGQKEQQQCEESCKSQYGEK----------DQQQRHRPEDPQRRYEECQQE 93 Query: 410 CQHHKVPARKKQCVDECHRREHHHPSRAA-----CERKCSHWRD-PTRKERCVQTC 261 C+ + ++ QC C +R ++ C++ C P RK++CV+ C Sbjct: 94 CRQQE-ERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVREC 148 Score = 30.8 bits (68), Expect = 4.2 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = -2 Query: 698 RATTSCDIKC-QHHKVPARKKQCVDECHSREHHHPSRASCERK 573 R C C Q + P RK+QCV EC R +P R E + Sbjct: 122 RQFQECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 43.1 bits (100), Expect = 8e-04 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 2/137 (1%) Frame = -2 Query: 683 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQ-CVQQCMRYGL 507 C +CQ + R + D+C R E + DP R+ Q C Q C + Sbjct: 44 CRKRCQ---LETRGQTEQDKCEDRSETQLK----EEQQRDGEDPQRRYQDCRQHCQQEER 96 Query: 506 NLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSR 330 L E+ ++ + D+ C +CQ + P RK+QCV EC + P + Sbjct: 97 RLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWK 156 Query: 329 AACERKCSHWRDPTRKE 279 E K WR+ +E Sbjct: 157 GERENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 4.2 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = -2 Query: 422 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 264 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 263 C 261 C Sbjct: 146 C 146
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 39.3 bits (90), Expect = 0.012 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 3/146 (2%) Frame = -2 Query: 683 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLN 504 C + K A KK+C E +E + C ++ A K++C + + Sbjct: 109 CAEAAKKEKEAAEKKKCA-EAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEKEA 167 Query: 503 LXXXXXXXVIERPHAEEVEVDDQS---NDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 333 ++ E+ +Q C + K A KK+C +E ++E Sbjct: 168 AEKKKCAEAAQKKKCAELAKKEQEAAEKKKCAEAAKKEKEAAEKKKC-EERAKKEKEAAE 226 Query: 332 RAACERKCSHWRDPTRKERCVQTCMR 255 + CE + ++ K++C + + Sbjct: 227 KKKCEERAKKEKEAAEKKKCAEAAKK 252
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Frame = -2 Query: 695 ATTSCDIKCQHHK--VPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQC 522 AT +CD CQH+ P K+ C E SC+ +C R+ C QC Sbjct: 42 ATCNCDYNCQHYMECCPDFKRVCSPE-----------LSCKGRCFESFARGRECDCDSQC 90 Query: 521 MRYG 510 +YG Sbjct: 91 KQYG 94
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 32.0 bits (71), Expect = 1.9 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Frame = -2 Query: 695 ATTSCDIKCQHHK--VPARKKQCVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQC 522 AT +CD CQH+ P K+ C E SC+ +C + R+ C QC Sbjct: 42 ATCNCDYNCQHYMECCPDFKRVCTAE-----------LSCKGRCFESFERGRECDCDAQC 90 Query: 521 MRY 513 +Y Sbjct: 91 KKY 93
>VCL_THECC (Q43358) Vicilin precursor| Length = 525 Score = 32.0 bits (71), Expect = 1.9 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 11/106 (10%) Frame = -2 Query: 560 RDPARK-EQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKC-------- 408 RDP ++ EQC ++C E +++ + C+ +C Sbjct: 36 RDPRQQYEQCQRRC---------------------ESEATEEREQEQCEQRCEREYKEQQ 74 Query: 407 --QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 276 Q ++ + +QC C ++ + C+RKC W +ER Sbjct: 75 RQQEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118
>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1911 Score = 30.8 bits (68), Expect = 4.2 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 1/125 (0%) Frame = -2 Query: 680 DIKCQHHKVPARKKQ-CVDECHSREHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLN 504 D +C H +P+ Q C +C R ++ C +C CM+Y ++ Sbjct: 884 DKECDHLPLPSFVTQSCNTDCELRGMLLAKKSECSSQCGQ-----GYRTLDIHCMKYSIH 938 Query: 503 LXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 324 + V+VDD H C P ++ C C H+ + Sbjct: 939 -------------EGQTVQVDD-------HYCGDQLKPPTQELCHGNCVFTRWHYSEWSQ 978 Query: 323 CERKC 309 C R C Sbjct: 979 CSRSC 983
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 30.4 bits (67), Expect = 5.5 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = -2 Query: 611 EHHHPSRASCERKCSH*RDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQS 432 E +PS C R C+ +D R + C +C + I RP + E + Q Sbjct: 29 EKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQ 88 Query: 431 NDSCD-------------HKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 312 + + Q H+ +++ E HR+E H + + E + Sbjct: 89 HGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQ 141
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 9.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 418 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 302 TT A +I +RG ++W ATD + L +G V I Sbjct: 52 TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,220,705 Number of Sequences: 219361 Number of extensions: 1515588 Number of successful extensions: 4648 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4621 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
