Clone Name | rbasd17h11 |
---|---|
Clone Library Name | barley_pub |
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 37.4 bits (85), Expect = 0.044 Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Frame = -2 Query: 580 NDDPPECRSEPQVSMHPPTGTY---QASISAPSNFGLRPFYCHPPPMQILPRENFAGSMP 410 N P ++P S +PPTG Y S P F P PPP+ + R N S+ Sbjct: 1066 NPYAPTATTQPNGSSYPPTGPYTNNHTMTSPPPVFNKPP--TGPPPISMKKRSNKLASIE 1123 Query: 409 AFPMVGAQRQQVRYSQSLHLTPSRVQPP 326 P GA S + L PS QPP Sbjct: 1124 QNPSQGATYPPTLSSSASPLQPS--QPP 1149
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 34.7 bits (78), Expect = 0.29 Identities = 33/128 (25%), Positives = 43/128 (33%), Gaps = 4/128 (3%) Frame = -2 Query: 670 SNHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISA 497 S H Q P AP H + + PP R +PQ + PP Q+ + Sbjct: 220 SRGHQPQPPTHRHAPPTHRHAPPTHQPSPLRHLPPSPRRQPQPPTYSPPPPAYAQSPQPS 279 Query: 496 PSNFGLRPFYCHPPPMQIL--PRENFAGSMPAFPMVGAQRQQVRYSQSLHLTPSRVQPPQ 323 P+ P Y PPP I P ++ S P P TP+ PP Sbjct: 280 PTYSPPPPTYSPPPPSPIYSPPPPAYSPSPPPTP-----------------TPTFSPPPP 322 Query: 322 GYINPHVY 299 Y P Y Sbjct: 323 AYSPPPTY 330
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 34.3 bits (77), Expect = 0.37 Identities = 29/101 (28%), Positives = 37/101 (36%), Gaps = 25/101 (24%) Frame = -2 Query: 550 PQVSMHPPTGTYQASISAPSNFGLR-------------------PFYCHPPPMQILPREN 428 PQ HPP +S PS F L P HPPP+Q++P+ Sbjct: 934 PQAHKHPP------HLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 987 Query: 427 FAGSMPAFPMVGAQRQQV------RYSQSLHLTPSRVQPPQ 323 S PA P Q Q + + LH PS+ PQ Sbjct: 988 PLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQ 1028
>EXTN2_ARATH (Q9M1G9) Extensin-2 precursor (AtExt2) (Cell wall| hydroxyproline-rich glycoprotein 1) (HRGP1) Length = 743 Score = 33.9 bits (76), Expect = 0.49 Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 15/132 (11%) Frame = -2 Query: 646 PYRNPAPVMHH----PTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSNFGL 479 PY +P+P +H+ P Y+ + PP P+V P Y + P + Sbjct: 533 PYYSPSPKVHYKSPPPPYVYS-----SPPPPYYSPSPKVHYKSPPPPYVYNSPPPPYYSP 587 Query: 478 RP-----------FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYSQSLHLTPSRVQ 332 P Y PPP P P P V + YS S + Sbjct: 588 SPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPP 647 Query: 331 PPQGYINPHVYY 296 PP +P VYY Sbjct: 648 PPYYSPSPKVYY 659
>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)| Length = 427 Score = 33.5 bits (75), Expect = 0.64 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 14/138 (10%) Frame = -2 Query: 664 HHSLQKP-----YRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQAS 506 H+ + P + +P PV H P K + + PP P H PP + Sbjct: 59 HYEYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVY 118 Query: 505 ISAP---SNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLT 347 S P ++ P Y PPP P++++ P P+ V +S + ++ Sbjct: 119 KSPPPPVKHYSPPPVYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVY 174 Query: 346 PSRVQPPQGYINPHVYYS 293 S P + Y P VY+S Sbjct: 175 KSPPPPVKHYSPPPVYHS 192 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 269 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 328 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305 Y PPP P++++ P P+ V +S + ++ S P + Y P Sbjct: 329 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 384 Query: 304 VYYS 293 VY+S Sbjct: 385 VYHS 388 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 241 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 300 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305 Y PPP P++++ P P+ V +S + ++ S P + Y P Sbjct: 301 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 356 Query: 304 VYYS 293 VY+S Sbjct: 357 VYHS 360 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 213 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 272 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305 Y PPP P++++ P P+ V +S + ++ S P + Y P Sbjct: 273 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 328 Query: 304 VYYS 293 VY+S Sbjct: 329 VYHS 332 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 185 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 244 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305 Y PPP P++++ P P+ V +S + ++ S P + Y P Sbjct: 245 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 300 Query: 304 VYYS 293 VY+S Sbjct: 301 VYHS 304 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 157 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 216 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305 Y PPP P++++ P P+ V +S + ++ S P + Y P Sbjct: 217 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 272 Query: 304 VYYS 293 VY+S Sbjct: 273 VYHS 276 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 129 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 188 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305 Y PPP P++++ P P+ V +S + ++ S P + Y P Sbjct: 189 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 244 Query: 304 VYYS 293 VY+S Sbjct: 245 VYHS 248 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 101 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 160 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305 Y PPP P++++ P P+ V +S + ++ S P + Y P Sbjct: 161 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 216 Query: 304 VYYS 293 VY+S Sbjct: 217 VYHS 220 Score = 32.3 bits (72), Expect = 1.4 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 9/133 (6%) Frame = -2 Query: 664 HHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP- 494 H++ + +P PV H P K + PP P H PP + S P Sbjct: 36 HYTPPVKHYSPPPVYHSPPPPKKHYEYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP 95 Query: 493 --SNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQ 332 ++ P Y PPP P++++ P P+ V +S + ++ S Sbjct: 96 PVKHYSPPPVYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP 151 Query: 331 PPQGYINPHVYYS 293 P + Y P VY+S Sbjct: 152 PVKHYSPPPVYHS 164 Score = 31.2 bits (69), Expect = 3.2 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Frame = -2 Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473 +P PV H P K + + PP P H PP + S P ++ P Sbjct: 325 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 384 Query: 472 FYCHPPPMQILPRENFAGSMPAFPMV 395 Y PPP P+E + P P V Sbjct: 385 VYHSPPP----PKEKYVYKSPPPPPV 406
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 33.1 bits (74), Expect = 0.83 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Frame = -2 Query: 550 PQVSMHPPTGTYQA-SISAPSNFGLRPF--YCHPPPMQILPRENFAGSMPAFPMVGAQRQ 380 P V P T YQ S+ P +P+ Y PPP + GS P PM + Sbjct: 583 PAVGPPPQTNYYQGYSMPPPQQQQQQPYGNYGMPPPSH----DQGYGSQPPIPM---NQS 635 Query: 379 QVRYSQSLHLTPSRVQPPQGY 317 RY S+ P + Q PQGY Sbjct: 636 YGRYQTSIPPPPPQQQIPQGY 656
>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting protein)| Length = 3038 Score = 33.1 bits (74), Expect = 0.83 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = -2 Query: 658 SLQKPYRNPAPVMHHPTYMMKEVI--MINDDPPECRSEPQVSMHPPTGTYQASISAPS 491 S +P R P PV HHP ++ D S P S+ PP +A SAPS Sbjct: 2275 SRSRPSRIPQPVRHHPPVLVSSAASSQAEADKMSGTSTPGPSLPPPGAAPEAGPSAPS 2332
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 33.1 bits (74), Expect = 0.83 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Frame = -2 Query: 667 NHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSN 488 +HH Q+ + PAPV P ++ PP+ + +P PP+ QA+ + S+ Sbjct: 739 HHHHHQQMQQAPAPVPQQPPPPPQQPPP--PPPPQQQQQPPPPPPPPSMPQQAAPAMKSS 796 Query: 487 FGLRPFYCHPPPMQILPRENFAGSMPA--FPMVGAQRQQVRYSQSLHLTPSRVQPPQGYI 314 PPP +P F +G Q + + L P QPP+ Sbjct: 797 ---------PPPFIATQVPVLEPQLPGSVFDPIGHFTQPILHLPQPELPPHLPQPPEHST 847 Query: 313 NPHV 302 PH+ Sbjct: 848 PPHL 851
>EXTN1_ARATH (Q38913) Extensin-1 precursor (AtExt1) (AtExt4)| Length = 373 Score = 32.7 bits (73), Expect = 1.1 Identities = 20/71 (28%), Positives = 29/71 (40%) Frame = -2 Query: 664 HHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSNF 485 H+S Y++P P + H Y V P + S P V PP Y++ ++ Sbjct: 48 HYSPPPVYKSPPPPVKH--YSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYKSPPPPVKHY 105 Query: 484 GLRPFYCHPPP 452 P Y PPP Sbjct: 106 SPPPVYKSPPP 116
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 32.3 bits (72), Expect = 1.4 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 26/102 (25%) Frame = -2 Query: 550 PQVSMHPPTGTYQASISAPSNFGLR-------------------PFYCHPPPMQILPREN 428 PQ HPP +S PS F + P HPPP+Q++P+ Sbjct: 933 PQAHKHPP------HLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 986 Query: 427 FAGSMPAFPMVGAQRQQV-------RYSQSLHLTPSRVQPPQ 323 S PA P Q Q + + LH PS+ PQ Sbjct: 987 PLPSSPAQPPGLTQSQSLPPPAASHPTTGGLHQVPSQSPFPQ 1028
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 31.6 bits (70), Expect = 2.4 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%) Frame = -2 Query: 658 SLQKPYRNPAPVMHHPTYMMKEVIMIN-DDPPECRSEPQVSMHPPTGTYQASISAPSNF- 485 S QK + ++HH ++ + + PPE P S PP+ +Y P ++ Sbjct: 116 SYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYY 175 Query: 484 ---GLRPFY--CHPPPMQILPRENFAGSMPAFPMVGAQRQQV-----RYSQSLHLTPSRV 335 +P+ P P Q P +++ P++ + Q Y S +PSR Sbjct: 176 PPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSR- 234 Query: 334 QPPQGY 317 P QG+ Sbjct: 235 -PSQGH 239
>YNK2_CAEEL (P34553) Hypothetical protein R10E12.2| Length = 395 Score = 31.6 bits (70), Expect = 2.4 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Frame = -2 Query: 679 MVQSNHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRS---EPQVSM-HPPTGTYQ 512 M S+HH Q+ M+H TY PP PQ + HPPT + Q Sbjct: 317 MYNSHHHQHQQQQNAHPSEMYHSTYTRDGYQTYRPPPPSVHPPIFPPQTQLFHPPTYSTQ 376 Query: 511 ASISAPSN 488 +++P++ Sbjct: 377 RHVTSPNS 384
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 31.2 bits (69), Expect = 3.2 Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Frame = -2 Query: 550 PQVSMHPPTGTYQASISAPSNFGLR-------------------PFYCHPPPMQILPREN 428 PQ HPP +S PS F + P HPPP+Q++P+ Sbjct: 942 PQAHKHPP------HLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 995 Query: 427 FAGSMPAFPMVGAQRQQVRYSQSLHLTPSRVQPPQG 320 S PA P Q Q + P PP G Sbjct: 996 PLPSSPAQPPGLTQSQNLP-------PPPASHPPTG 1024 Score = 30.0 bits (66), Expect = 7.1 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = -2 Query: 550 PQVSMHPPTGTYQASISAPSNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQ 386 P + HPPTG +Q + P F PF PP P + PA P AQ Sbjct: 1015 PPPASHPPTGLHQVAPQPP--FAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQ 1067
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 31.2 bits (69), Expect = 3.2 Identities = 42/148 (28%), Positives = 59/148 (39%), Gaps = 11/148 (7%) Frame = -2 Query: 661 HSLQK----PYRNPAP-VMHHPTYMMKEVIMINDDPPECRSE-PQVSMHPPTGTYQASIS 500 HSL K P +P P V HH + ++ I + S+ P S H Sbjct: 300 HSLIKHQQIPLHSPPPKVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNHGLSP 359 Query: 499 APSNFGLRPFYC-----HPPPMQILPRENFAGSMPAFPMVGAQRQQVRYSQSLHLTPSRV 335 APSN +P +C HPPP+ + P N A S +V S +P+ + Sbjct: 360 APSN--AQPQHCSPVQSHPPPLTVSP--NQAQSAQQSVVVSPPP-----PHSPSQSPTII 410 Query: 334 QPPQGYINPHVYYSQDLR*LLSNPNDQE 251 PQ I PH S L+ + PN Q+ Sbjct: 411 IHPQALIQPHPLVSSALQ---TGPNLQQ 435
>PAX3_MOUSE (P24610) Paired box protein Pax-3| Length = 479 Score = 30.0 bits (66), Expect = 7.1 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -2 Query: 613 PTYMMKEVIMINDDPPECRSEPQVSMH-----PPTGTYQASISAPSNFGLRPFYCHP 458 PTY + E P+ S+P ++H PP+ +Q++I PSN YC P Sbjct: 303 PTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTI--PSNADSSSAYCLP 357
>NO10_MEDSA (Q40357) Early nodulin 10 precursor| Length = 122 Score = 30.0 bits (66), Expect = 7.1 Identities = 23/73 (31%), Positives = 26/73 (35%) Frame = -2 Query: 646 PYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSNFGLRPFY 467 PYRN P + + PP P + PPT P L PFY Sbjct: 52 PYRNFVPPFALNPVYNAPIYKTPNSPPIYN--PPIYEAPPTYKPSKKRLPPPFQKLPPFY 109 Query: 466 CHPPPMQILPREN 428 PP Q LPR N Sbjct: 110 KQAPPSQKLPRVN 122
>ANXA7_DICDI (P24639) Annexin A7 (Annexin VII) (Synexin)| Length = 462 Score = 30.0 bits (66), Expect = 7.1 Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 5/132 (3%) Frame = -2 Query: 697 PMHGGFMVQSNHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGT 518 P + G+ QSN +P + AP +P PP+ PQ +PP Sbjct: 4 PPNQGYPPQSNS---PQPGQYGAPQQGYPPQQ--------GYPPQQGYPPQQG-YPPQQG 51 Query: 517 YQASISAPSNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQ-----QVRYSQSLH 353 Y P G P +PP P++ + P G Q Q Y Sbjct: 52 YPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQG 111 Query: 352 LTPSRVQPPQGY 317 P + PPQGY Sbjct: 112 YPPQQGYPPQGY 123
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 30.0 bits (66), Expect = 7.1 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Frame = -2 Query: 685 GFMVQS---NHHSLQKPY-RNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGT 518 GF + S NHH Q P+ +NP HP Y V+ P + +PQ+ T Sbjct: 234 GFTMSSSPINHHPHQHPHLQNP----QHPHYTSSPVVGAGSCPSAAQGQPQIQSQSQTTA 289 Query: 517 YQASIS 500 S++ Sbjct: 290 VHRSVA 295
>DCP1_ARATH (Q9SJF3) mRNA decapping enzyme-like protein (EC 3.-.-.-) (DCP1| homolog) Length = 367 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Frame = -2 Query: 535 HPPTGTYQASISAPSNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYSQSL 356 H P +Q +I+ P P PPP+Q S P + + + + ++ Sbjct: 213 HQPHQPHQPTIAPPVAAAAPPQIQSPPPLQ--------SSSPLMTLFDNNPEVISSNSNI 264 Query: 355 H---LTPSRVQPPQGYINPHV 302 H +TPS PP+ PH+ Sbjct: 265 HTDLVTPSFFGPPRMMAQPHL 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,991,495 Number of Sequences: 219361 Number of extensions: 2561490 Number of successful extensions: 5828 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5800 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)