ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31) 37 0.044
2EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 35 0.29
3RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro... 34 0.37
4EXTN2_ARATH (Q9M1G9) Extensin-2 precursor (AtExt2) (Cell wall hy... 34 0.49
5EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5) 33 0.64
6NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3 33 0.83
7TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-inte... 33 0.83
8BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot... 33 0.83
9EXTN1_ARATH (Q38913) Extensin-1 precursor (AtExt1) (AtExt4) 33 1.1
10RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote... 32 1.4
11YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear pro... 32 2.4
12YNK2_CAEEL (P34553) Hypothetical protein R10E12.2 32 2.4
13RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro... 31 3.2
14PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3 31 3.2
15PAX3_MOUSE (P24610) Paired box protein Pax-3 30 7.1
16NO10_MEDSA (Q40357) Early nodulin 10 precursor 30 7.1
17ANXA7_DICDI (P24639) Annexin A7 (Annexin VII) (Synexin) 30 7.1
18SPEN_DROME (Q8SX83) Protein split ends 30 7.1
19DCP1_ARATH (Q9SJF3) mRNA decapping enzyme-like protein (EC 3.-.-... 30 9.2

>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)|
          Length = 1273

 Score = 37.4 bits (85), Expect = 0.044
 Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = -2

Query: 580  NDDPPECRSEPQVSMHPPTGTY---QASISAPSNFGLRPFYCHPPPMQILPRENFAGSMP 410
            N   P   ++P  S +PPTG Y       S P  F   P    PPP+ +  R N   S+ 
Sbjct: 1066 NPYAPTATTQPNGSSYPPTGPYTNNHTMTSPPPVFNKPP--TGPPPISMKKRSNKLASIE 1123

Query: 409  AFPMVGAQRQQVRYSQSLHLTPSRVQPP 326
              P  GA       S +  L PS  QPP
Sbjct: 1124 QNPSQGATYPPTLSSSASPLQPS--QPP 1149



to top

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 33/128 (25%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
 Frame = -2

Query: 670 SNHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISA 497
           S  H  Q P    AP  H       +   +   PP  R +PQ   +  PP    Q+   +
Sbjct: 220 SRGHQPQPPTHRHAPPTHRHAPPTHQPSPLRHLPPSPRRQPQPPTYSPPPPAYAQSPQPS 279

Query: 496 PSNFGLRPFYCHPPPMQIL--PRENFAGSMPAFPMVGAQRQQVRYSQSLHLTPSRVQPPQ 323
           P+     P Y  PPP  I   P   ++ S P  P                 TP+   PP 
Sbjct: 280 PTYSPPPPTYSPPPPSPIYSPPPPAYSPSPPPTP-----------------TPTFSPPPP 322

Query: 322 GYINPHVY 299
            Y  P  Y
Sbjct: 323 AYSPPPTY 330



to top

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 29/101 (28%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
 Frame = -2

Query: 550  PQVSMHPPTGTYQASISAPSNFGLR-------------------PFYCHPPPMQILPREN 428
            PQ   HPP       +S PS F L                    P   HPPP+Q++P+  
Sbjct: 934  PQAHKHPP------HLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 987

Query: 427  FAGSMPAFPMVGAQRQQV------RYSQSLHLTPSRVQPPQ 323
               S PA P    Q Q +        +  LH  PS+   PQ
Sbjct: 988  PLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQ 1028



to top

>EXTN2_ARATH (Q9M1G9) Extensin-2 precursor (AtExt2) (Cell wall|
           hydroxyproline-rich glycoprotein 1) (HRGP1)
          Length = 743

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 15/132 (11%)
 Frame = -2

Query: 646 PYRNPAPVMHH----PTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSNFGL 479
           PY +P+P +H+    P Y+       +  PP     P+V    P   Y  +   P  +  
Sbjct: 533 PYYSPSPKVHYKSPPPPYVYS-----SPPPPYYSPSPKVHYKSPPPPYVYNSPPPPYYSP 587

Query: 478 RP-----------FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYSQSLHLTPSRVQ 332
            P            Y  PPP    P        P  P V +      YS S  +      
Sbjct: 588 SPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPP 647

Query: 331 PPQGYINPHVYY 296
           PP    +P VYY
Sbjct: 648 PPYYSPSPKVYY 659



to top

>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)|
          Length = 427

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 14/138 (10%)
 Frame = -2

Query: 664 HHSLQKP-----YRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQAS 506
           H+  + P     + +P PV H P    K  +  +  PP     P    H  PP   +   
Sbjct: 59  HYEYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVY 118

Query: 505 ISAP---SNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLT 347
            S P    ++   P Y  PPP    P++++    P  P+       V +S    +  ++ 
Sbjct: 119 KSPPPPVKHYSPPPVYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVY 174

Query: 346 PSRVQPPQGYINPHVYYS 293
            S   P + Y  P VY+S
Sbjct: 175 KSPPPPVKHYSPPPVYHS 192



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 269 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 328

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305
            Y  PPP    P++++    P  P+       V +S    +  ++  S   P + Y  P 
Sbjct: 329 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 384

Query: 304 VYYS 293
           VY+S
Sbjct: 385 VYHS 388



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 241 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 300

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305
            Y  PPP    P++++    P  P+       V +S    +  ++  S   P + Y  P 
Sbjct: 301 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 356

Query: 304 VYYS 293
           VY+S
Sbjct: 357 VYHS 360



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 213 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 272

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305
            Y  PPP    P++++    P  P+       V +S    +  ++  S   P + Y  P 
Sbjct: 273 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 328

Query: 304 VYYS 293
           VY+S
Sbjct: 329 VYHS 332



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 185 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 244

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305
            Y  PPP    P++++    P  P+       V +S    +  ++  S   P + Y  P 
Sbjct: 245 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 300

Query: 304 VYYS 293
           VY+S
Sbjct: 301 VYHS 304



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 157 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 216

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305
            Y  PPP    P++++    P  P+       V +S    +  ++  S   P + Y  P 
Sbjct: 217 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 272

Query: 304 VYYS 293
           VY+S
Sbjct: 273 VYHS 276



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 129 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 188

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305
            Y  PPP    P++++    P  P+       V +S    +  ++  S   P + Y  P 
Sbjct: 189 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 244

Query: 304 VYYS 293
           VY+S
Sbjct: 245 VYHS 248



 Score = 33.1 bits (74), Expect = 0.83
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 101 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 160

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQPPQGYINPH 305
            Y  PPP    P++++    P  P+       V +S    +  ++  S   P + Y  P 
Sbjct: 161 VYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 216

Query: 304 VYYS 293
           VY+S
Sbjct: 217 VYHS 220



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 9/133 (6%)
 Frame = -2

Query: 664 HHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP- 494
           H++    + +P PV H P    K     +  PP     P    H  PP   +    S P 
Sbjct: 36  HYTPPVKHYSPPPVYHSPPPPKKHYEYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP 95

Query: 493 --SNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYS----QSLHLTPSRVQ 332
              ++   P Y  PPP    P++++    P  P+       V +S    +  ++  S   
Sbjct: 96  PVKHYSPPPVYHSPPP----PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP 151

Query: 331 PPQGYINPHVYYS 293
           P + Y  P VY+S
Sbjct: 152 PVKHYSPPPVYHS 164



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
 Frame = -2

Query: 637 NPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMH--PPTGTYQASISAP---SNFGLRP 473
           +P PV H P    K  +  +  PP     P    H  PP   +    S P    ++   P
Sbjct: 325 SPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPP 384

Query: 472 FYCHPPPMQILPRENFAGSMPAFPMV 395
            Y  PPP    P+E +    P  P V
Sbjct: 385 VYHSPPP----PKEKYVYKSPPPPPV 406



to top

>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3|
          Length = 802

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -2

Query: 550 PQVSMHPPTGTYQA-SISAPSNFGLRPF--YCHPPPMQILPRENFAGSMPAFPMVGAQRQ 380
           P V   P T  YQ  S+  P     +P+  Y  PPP      +   GS P  PM    + 
Sbjct: 583 PAVGPPPQTNYYQGYSMPPPQQQQQQPYGNYGMPPPSH----DQGYGSQPPIPM---NQS 635

Query: 379 QVRYSQSLHLTPSRVQPPQGY 317
             RY  S+   P + Q PQGY
Sbjct: 636 YGRYQTSIPPPPPQQQIPQGY 656



to top

>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting protein)|
          Length = 3038

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 658  SLQKPYRNPAPVMHHPTYMMKEVI--MINDDPPECRSEPQVSMHPPTGTYQASISAPS 491
            S  +P R P PV HHP  ++          D     S P  S+ PP    +A  SAPS
Sbjct: 2275 SRSRPSRIPQPVRHHPPVLVSSAASSQAEADKMSGTSTPGPSLPPPGAAPEAGPSAPS 2332



to top

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 2/124 (1%)
 Frame = -2

Query: 667  NHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSN 488
            +HH  Q+  + PAPV   P    ++       PP+ + +P     PP+   QA+ +  S+
Sbjct: 739  HHHHHQQMQQAPAPVPQQPPPPPQQPPP--PPPPQQQQQPPPPPPPPSMPQQAAPAMKSS 796

Query: 487  FGLRPFYCHPPPMQILPRENFAGSMPA--FPMVGAQRQQVRYSQSLHLTPSRVQPPQGYI 314
                     PPP            +P   F  +G   Q + +     L P   QPP+   
Sbjct: 797  ---------PPPFIATQVPVLEPQLPGSVFDPIGHFTQPILHLPQPELPPHLPQPPEHST 847

Query: 313  NPHV 302
             PH+
Sbjct: 848  PPHL 851



to top

>EXTN1_ARATH (Q38913) Extensin-1 precursor (AtExt1) (AtExt4)|
          Length = 373

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = -2

Query: 664 HHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSNF 485
           H+S    Y++P P + H  Y    V      P +  S P V   PP   Y++      ++
Sbjct: 48  HYSPPPVYKSPPPPVKH--YSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYKSPPPPVKHY 105

Query: 484 GLRPFYCHPPP 452
              P Y  PPP
Sbjct: 106 SPPPVYKSPPP 116



to top

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 26/102 (25%)
 Frame = -2

Query: 550  PQVSMHPPTGTYQASISAPSNFGLR-------------------PFYCHPPPMQILPREN 428
            PQ   HPP       +S PS F +                    P   HPPP+Q++P+  
Sbjct: 933  PQAHKHPP------HLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 986

Query: 427  FAGSMPAFPMVGAQRQQV-------RYSQSLHLTPSRVQPPQ 323
               S PA P    Q Q +         +  LH  PS+   PQ
Sbjct: 987  PLPSSPAQPPGLTQSQSLPPPAASHPTTGGLHQVPSQSPFPQ 1028



to top

>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
           (ZAP113)
          Length = 1951

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
 Frame = -2

Query: 658 SLQKPYRNPAPVMHHPTYMMKEVIMIN-DDPPECRSEPQVSMHPPTGTYQASISAPSNF- 485
           S QK  +    ++HH       ++ +  + PPE    P  S  PP+ +Y      P ++ 
Sbjct: 116 SYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYY 175

Query: 484 ---GLRPFY--CHPPPMQILPRENFAGSMPAFPMVGAQRQQV-----RYSQSLHLTPSRV 335
                +P+     P P Q  P +++    P++    +  Q        Y  S   +PSR 
Sbjct: 176 PPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSR- 234

Query: 334 QPPQGY 317
            P QG+
Sbjct: 235 -PSQGH 239



to top

>YNK2_CAEEL (P34553) Hypothetical protein R10E12.2|
          Length = 395

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = -2

Query: 679 MVQSNHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRS---EPQVSM-HPPTGTYQ 512
           M  S+HH  Q+        M+H TY           PP        PQ  + HPPT + Q
Sbjct: 317 MYNSHHHQHQQQQNAHPSEMYHSTYTRDGYQTYRPPPPSVHPPIFPPQTQLFHPPTYSTQ 376

Query: 511 ASISAPSN 488
             +++P++
Sbjct: 377 RHVTSPNS 384



to top

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
 Frame = -2

Query: 550  PQVSMHPPTGTYQASISAPSNFGLR-------------------PFYCHPPPMQILPREN 428
            PQ   HPP       +S PS F +                    P   HPPP+Q++P+  
Sbjct: 942  PQAHKHPP------HLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 995

Query: 427  FAGSMPAFPMVGAQRQQVRYSQSLHLTPSRVQPPQG 320
               S PA P    Q Q +         P    PP G
Sbjct: 996  PLPSSPAQPPGLTQSQNLP-------PPPASHPPTG 1024



 Score = 30.0 bits (66), Expect = 7.1
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -2

Query: 550  PQVSMHPPTGTYQASISAPSNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQ 386
            P  + HPPTG +Q +   P  F   PF    PP    P      + PA P   AQ
Sbjct: 1015 PPPASHPPTGLHQVAPQPP--FAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQ 1067



to top

>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 42/148 (28%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
 Frame = -2

Query: 661 HSLQK----PYRNPAP-VMHHPTYMMKEVIMINDDPPECRSE-PQVSMHPPTGTYQASIS 500
           HSL K    P  +P P V HH   + ++   I     +  S+ P  S H           
Sbjct: 300 HSLIKHQQIPLHSPPPKVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNHGLSP 359

Query: 499 APSNFGLRPFYC-----HPPPMQILPRENFAGSMPAFPMVGAQRQQVRYSQSLHLTPSRV 335
           APSN   +P +C     HPPP+ + P  N A S     +V           S   +P+ +
Sbjct: 360 APSN--AQPQHCSPVQSHPPPLTVSP--NQAQSAQQSVVVSPPP-----PHSPSQSPTII 410

Query: 334 QPPQGYINPHVYYSQDLR*LLSNPNDQE 251
             PQ  I PH   S  L+   + PN Q+
Sbjct: 411 IHPQALIQPHPLVSSALQ---TGPNLQQ 435



to top

>PAX3_MOUSE (P24610) Paired box protein Pax-3|
          Length = 479

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -2

Query: 613 PTYMMKEVIMINDDPPECRSEPQVSMH-----PPTGTYQASISAPSNFGLRPFYCHP 458
           PTY + E        P+  S+P  ++H     PP+  +Q++I  PSN      YC P
Sbjct: 303 PTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTI--PSNADSSSAYCLP 357



to top

>NO10_MEDSA (Q40357) Early nodulin 10 precursor|
          Length = 122

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/73 (31%), Positives = 26/73 (35%)
 Frame = -2

Query: 646 PYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGTYQASISAPSNFGLRPFY 467
           PYRN  P           +    + PP     P +   PPT         P    L PFY
Sbjct: 52  PYRNFVPPFALNPVYNAPIYKTPNSPPIYN--PPIYEAPPTYKPSKKRLPPPFQKLPPFY 109

Query: 466 CHPPPMQILPREN 428
              PP Q LPR N
Sbjct: 110 KQAPPSQKLPRVN 122



to top

>ANXA7_DICDI (P24639) Annexin A7 (Annexin VII) (Synexin)|
          Length = 462

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 5/132 (3%)
 Frame = -2

Query: 697 PMHGGFMVQSNHHSLQKPYRNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGT 518
           P + G+  QSN     +P +  AP   +P             PP+    PQ   +PP   
Sbjct: 4   PPNQGYPPQSNS---PQPGQYGAPQQGYPPQQ--------GYPPQQGYPPQQG-YPPQQG 51

Query: 517 YQASISAPSNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQ-----QVRYSQSLH 353
           Y      P   G  P   +PP     P++ +       P  G   Q     Q  Y     
Sbjct: 52  YPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQG 111

Query: 352 LTPSRVQPPQGY 317
             P +  PPQGY
Sbjct: 112 YPPQQGYPPQGY 123



to top

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -2

Query: 685 GFMVQS---NHHSLQKPY-RNPAPVMHHPTYMMKEVIMINDDPPECRSEPQVSMHPPTGT 518
           GF + S   NHH  Q P+ +NP     HP Y    V+     P   + +PQ+     T  
Sbjct: 234 GFTMSSSPINHHPHQHPHLQNP----QHPHYTSSPVVGAGSCPSAAQGQPQIQSQSQTTA 289

Query: 517 YQASIS 500
              S++
Sbjct: 290 VHRSVA 295



to top

>DCP1_ARATH (Q9SJF3) mRNA decapping enzyme-like protein (EC 3.-.-.-) (DCP1|
           homolog)
          Length = 367

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = -2

Query: 535 HPPTGTYQASISAPSNFGLRPFYCHPPPMQILPRENFAGSMPAFPMVGAQRQQVRYSQSL 356
           H P   +Q +I+ P      P    PPP+Q         S P   +     + +  + ++
Sbjct: 213 HQPHQPHQPTIAPPVAAAAPPQIQSPPPLQ--------SSSPLMTLFDNNPEVISSNSNI 264

Query: 355 H---LTPSRVQPPQGYINPHV 302
           H   +TPS   PP+    PH+
Sbjct: 265 HTDLVTPSFFGPPRMMAQPHL 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,991,495
Number of Sequences: 219361
Number of extensions: 2561490
Number of successful extensions: 5828
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5800
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top