Clone Information

BLAST Search Result

Clone Name	rbasd17h11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_472831.1\| Oryza sativa (japonica cultivar-group), predic...	78	4e-11
2	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
3	dbj\|AK120756.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	4e-11
4	dbj\|AK099564.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	4e-11
5	emb\|AL606441.3\|OSJN00012 Oryza sativa genomic DNA, chromosome 4,...	78	4e-11
6	dbj\|AK100883.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
7	gb\|AY111873.1\| Zea mays CL29338_1 mRNA sequence	54	6e-04
8	gb\|AC109601.9\| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom...	46	0.15
9	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	46	0.15
10	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
11	gb\|AC101661.7\| Mus musculus chromosome 1, clone RP23-26A10, comp...	44	0.61
12	emb\|AL645669.11\| Mouse DNA sequence from clone RP23-26A10 on chr...	44	0.61
13	gb\|AC163898.5\| Mus musculus chromosome 7, clone RP24-108A5, comp...	42	2.4
14	emb\|Z83848.1\|HS57A13 Human DNA sequence from clone RP1-57A13 on ...	42	2.4
15	gb\|CP000066.1\| Trypanosoma brucei chromosome 3, complete sequence	40	9.6
16	gb\|AC104642.11\| Trypanosoma brucei chromosome 3 clone RPCI93-27C...	40	9.6
17	gb\|AC079274.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	40	9.6
18	gb\|AC133081.4\| Mus musculus BAC clone RP24-290O13 from chromosom...	40	9.6
19	ref\|XM_820542.1\| Trypanosoma brucei TREU927 clone RPCI93-27C5 3'...	40	9.6
20	gb\|AC146509.2\| Pan troglodytes BAC clone RP43-93E9 from X, compl...	40	9.6
21	emb\|CR759945.8\| Zebrafish DNA sequence from clone CH211-167E4 in...	40	9.6
22	gb\|AC116322.5\| Mus musculus BAC clone RP23-273O16 from chromosom...	40	9.6
23	ref\|XM_643029.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.6
24	ref\|XM_646196.1\| Entamoeba histolytica HM-1:IMSS conserved hypot...	40	9.6
25	ref\|XM_649852.1\| Entamoeba histolytica HM-1:IMSS conserved hypot...	40	9.6
26	ref\|XM_650868.1\| Entamoeba histolytica HM-1:IMSS conserved hypot...	40	9.6
27	emb\|Z85997.1\|HSU101D3 Human DNA sequence from clone LL0XNC01-101...	40	9.6
28	emb\|AL354775.12\| Human DNA sequence from clone RP11-223F20 on ch...	40	9.6
29	gb\|AC090099.14\| Homo sapiens chromosome 11, clone RP11-113D6, co...	40	9.6
30	gb\|AC113415.3\| Homo sapiens chromosome 5 clone RP11-55N10, compl...	40	9.6
31	emb\|AL929087.4\| Zebrafish DNA sequence from clone CH211-226M16 i...	40	9.6
32	gb\|AC107948.7\| Homo sapiens chromosome 11, clone RP11-81D23, com...	40	9.6
33	gb\|AC026741.6\| Homo sapiens chromosome 5 clone CTD-2653M23, comp...	40	9.6
34	gb\|AC154297.3\| Mus musculus BAC clone RP23-427N21 from chromosom...	40	9.6
35	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
36	gb\|AC020699.6\| Homo sapiens BAC clone RP11-131K17 from 4, comple...	40	9.6
37	gb\|AC005235.2\| Homo sapiens BAC clone RP11-439M9 from 2, complet...	40	9.6
38	dbj\|AP000837.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
39	emb\|Z33352.1\|MCAAO M.capricolum DNA for CONTIG MCAAO	40	9.6
40	emb\|AL772273.11\| Zebrafish DNA sequence from clone CH211-153P8, ...	40	9.6
41	gb\|AC153739.3\| Aotus nancymaae clone CH258-485H7, complete sequence	40	9.6
42	gb\|AE016854.1\| Pseudomonas syringae pv. tomato str. DC3000 plasm...	40	9.6
43	emb\|AL645857.11\| Mouse DNA sequence from clone RP23-167N2 on chr...	40	9.6

>ref|XM_472831.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3720

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                        
Query: 576  tcattaatcatgataacctctttcatcatgtaggtagggtgatgcatgactggagcaggg 635
            |||| ||||||||| || ||||||||||||||||  || |||||||||||||||    ||
Sbjct: 3401 tcatcaatcatgattacttctttcatcatgtaggatggatgatgcatgactggaaggagg 3342

                                                               
Query: 636  tttctgtatggtttctgcagagaatgatgattagattgcaccatgaaacca 686
            || |||||||| || ||  ||||||||| || ||||||||||||| |||||
Sbjct: 3341 ttcctgtatggcttttgtggagaatgataatcagattgcaccatggaacca 3291



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 278  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 322
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 3720 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3676

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Plus

                                                                            
Query: 576      tcattaatcatgataacctctttcatcatgtaggtagggtgatgcatgactggagcaggg 635
                |||| ||||||||| || ||||||||||||||||  || |||||||||||||||    ||
Sbjct: 23529816 tcatcaatcatgattacttctttcatcatgtaggatggatgatgcatgactggaaggagg 23529875

                                                                   
Query: 636      tttctgtatggtttctgcagagaatgatgattagattgcaccatgaaacca 686
                || |||||||| || ||  ||||||||| || ||||||||||||| |||||
Sbjct: 23529876 ttcctgtatggcttttgtggagaatgataatcagattgcaccatggaacca 23529926



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 278      tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 322
                ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 23529497 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 23529541



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 80/99 (80%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                            
Query: 15       gataaatagtgaaatgtatgcttgatnactattggaaaaataccattctataatgtgctg 74
                ||||||||||||  | ||| |||||  ||||||||| || | |||| ||||||  | |||
Sbjct: 23529213 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 23529271

                                                       
Query: 75       caaatttgcagaatgtaattaaaacactttgaaggcaaa 113
                 || ||||||| |||||||| ||  ||||||||||||||
Sbjct: 23529272 gaactttgcaggatgtaattgaagtactttgaaggcaaa 23529310

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>dbj|AK120756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B14, full
            insert sequence
          Length = 4434

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                        
Query: 576  tcattaatcatgataacctctttcatcatgtaggtagggtgatgcatgactggagcaggg 635
            |||| ||||||||| || ||||||||||||||||  || |||||||||||||||    ||
Sbjct: 3807 tcatcaatcatgattacttctttcatcatgtaggatggatgatgcatgactggaaggagg 3748

                                                               
Query: 636  tttctgtatggtttctgcagagaatgatgattagattgcaccatgaaacca 686
            || |||||||| || ||  ||||||||| || ||||||||||||| |||||
Sbjct: 3747 ttcctgtatggcttttgtggagaatgataatcagattgcaccatggaacca 3697



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 278  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 322
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 4126 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4082



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 80/99 (80%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   gataaatagtgaaatgtatgcttgatnactattggaaaaataccattctataatgtgctg 74
            ||||||||||||  | ||| |||||  ||||||||| || | |||| ||||||  | |||
Sbjct: 4410 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 4352

                                                   
Query: 75   caaatttgcagaatgtaattaaaacactttgaaggcaaa 113
             || ||||||| |||||||| ||  ||||||||||||||
Sbjct: 4351 gaactttgcaggatgtaattgaagtactttgaaggcaaa 4313

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>dbj|AK099564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M05, full
            insert sequence
          Length = 3444

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                        
Query: 576  tcattaatcatgataacctctttcatcatgtaggtagggtgatgcatgactggagcaggg 635
            |||| ||||||||| || ||||||||||||||||  || |||||||||||||||    ||
Sbjct: 2899 tcatcaatcatgattacttctttcatcatgtaggatggatgatgcatgactggaaggagg 2840

                                                               
Query: 636  tttctgtatggtttctgcagagaatgatgattagattgcaccatgaaacca 686
            || |||||||| || ||  ||||||||| || ||||||||||||| |||||
Sbjct: 2839 ttcctgtatggcttttgtggagaatgataatcagattgcaccatggaacca 2789



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 278  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 322
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 3218 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3174

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>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
             complete sequence
          Length = 139298

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Plus

                                                                         
Query: 576   tcattaatcatgataacctctttcatcatgtaggtagggtgatgcatgactggagcaggg 635
             |||| ||||||||| || ||||||||||||||||  || |||||||||||||||    ||
Sbjct: 85719 tcatcaatcatgattacttctttcatcatgtaggatggatgatgcatgactggaaggagg 85778

                                                                
Query: 636   tttctgtatggtttctgcagagaatgatgattagattgcaccatgaaacca 686
             || |||||||| || ||  ||||||||| || ||||||||||||| |||||
Sbjct: 85779 ttcctgtatggcttttgtggagaatgataatcagattgcaccatggaacca 85829



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 278   tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 322
             ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 85400 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 85444



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 80/99 (80%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                         
Query: 15    gataaatagtgaaatgtatgcttgatnactattggaaaaataccattctataatgtgctg 74
             ||||||||||||  | ||| |||||  ||||||||| || | |||| ||||||  | |||
Sbjct: 85116 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 85174

                                                    
Query: 75    caaatttgcagaatgtaattaaaacactttgaaggcaaa 113
              || ||||||| |||||||| ||  ||||||||||||||
Sbjct: 85175 gaactttgcaggatgtaattgaagtactttgaaggcaaa 85213

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>dbj|AK100883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127M15, full
            insert sequence
          Length = 4644

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                        
Query: 582  atcatgataacctctttcatcatgtaggtagggtgatgcatgactggagcagggtttctg 641
            |||||||| || ||||||||||||||||  || |||||||||||||||    |||| |||
Sbjct: 4034 atcatgattacttctttcatcatgtaggatggatgatgcatgactggaaggaggttcctg 3975

                                                         
Query: 642  tatggtttctgcagagaatgatgattagattgcaccatgaaacca 686
            ||||| || ||  |||||| || || ||||| ||||||| |||||
Sbjct: 3974 tatggcttttgtggagaataataatcagattccaccatggaacca 3930



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 278  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 322
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 4359 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4315



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 80/99 (80%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   gataaatagtgaaatgtatgcttgatnactattggaaaaataccattctataatgtgctg 74
            ||||||||||||  | ||| |||||  ||||||||| || | |||| ||||||  | |||
Sbjct: 4643 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 4585

                                                   
Query: 75   caaatttgcagaatgtaattaaaacactttgaaggcaaa 113
             || ||||||| |||||||| ||  ||||||||||||||
Sbjct: 4584 gaactttgcaggatgtaattgaagtactttgaaggcaaa 4546

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>gb|AY111873.1| Zea mays CL29338_1 mRNA sequence
          Length = 1018

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 409 caggcatggatccagcaaaattctcccttggcaaaatttgcatcggcggtggatggcagt 468
           |||||||||||||||||    ||||||||||||| ||| | ||  |||||||| ||||||
Sbjct: 412 caggcatggatccagcagccctctcccttggcaagattgggatttgcggtggaaggcagt 471

                  
Query: 469 aaaatgg 475
           |||||||
Sbjct: 472 aaaatgg 478



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 594 tctttcatcatgtaggtagggtgatgcatg 623
           ||||||||||||||||| || |||||||||
Sbjct: 594 tctttcatcatgtaggttggatgatgcatg 623

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>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
             sequence
          Length = 145590

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 327   ggaggctggacacgagacggggtgaga 353
             |||||||||||| ||||||||||||||
Sbjct: 43957 ggaggctggacatgagacggggtgaga 43983

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 327      ggaggctggacacgagacggggtgaga 353
                |||||||||||| ||||||||||||||
Sbjct: 22448710 ggaggctggacatgagacggggtgaga 22448736

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 327      ggaggctggacacgagacggggtgaga 353
                |||||||||||| ||||||||||||||
Sbjct: 22441739 ggaggctggacatgagacggggtgaga 22441765

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>gb|AC101661.7| Mus musculus chromosome 1, clone RP23-26A10, complete sequence
          Length = 228933

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 120    tgtacctgagaagacaactaaagaaagcaa 149
              ||||||||| ||| ||||||||||||||||
Sbjct: 197470 tgtacctgacaaggcaactaaagaaagcaa 197441

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>emb|AL645669.11| Mouse DNA sequence from clone RP23-26A10 on chromosome 1 Contains part of
              the gene for ortholog of human amyotrophic lateral
              sclerosis 2 (juvenile) chromosome region candidate 19
              (ALS2CR19), complete sequence
          Length = 228932

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 120    tgtacctgagaagacaactaaagaaagcaa 149
              ||||||||| ||| ||||||||||||||||
Sbjct: 197469 tgtacctgacaaggcaactaaagaaagcaa 197440

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>gb|AC163898.5| Mus musculus chromosome 7, clone RP24-108A5, complete sequence
          Length = 143726

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 85     gaatgtaattaaaacactttg 105
              |||||||||||||||||||||
Sbjct: 110534 gaatgtaattaaaacactttg 110514

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>emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on chromosome Xq24 Contains the
             5' end of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, the gene for a novel protein and a
             CpG island, complete sequence
          Length = 169693

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    ataccattctataatgtgctg 74
             |||||||||||||||||||||
Sbjct: 43831 ataccattctataatgtgctg 43811

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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    ccaaccatggggaaagcagg 412
              ||||||||||||||||||||
Sbjct: 788099 ccaaccatggggaaagcagg 788080

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>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
          Length = 126762

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   ccaaccatggggaaagcagg 412
             ||||||||||||||||||||
Sbjct: 97047 ccaaccatggggaaagcagg 97028

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>gb|AC079274.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-142L8, complete
             sequence
          Length = 113724

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   tggggaaagcaggcatggat 419
             ||||||||||||||||||||
Sbjct: 74198 tggggaaagcaggcatggat 74179

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>gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosome 3, complete sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    atctcattttcaagttctct 254
              ||||||||||||||||||||
Sbjct: 100629 atctcattttcaagttctct 100610

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>ref|XM_820542.1| Trypanosoma brucei TREU927 clone RPCI93-27C5 3', 5'-cyclic nucleotide
            phosphodiesterase (Tb927.3.3070) partial mRNA
          Length = 2730

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  ccaaccatggggaaagcagg 412
            ||||||||||||||||||||
Sbjct: 1856 ccaaccatggggaaagcagg 1875

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>gb|AC146509.2| Pan troglodytes BAC clone RP43-93E9 from X, complete sequence
          Length = 135272

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 547   gtggctcacttctgcattcaggag 570
             |||||||||||||||| |||||||
Sbjct: 74587 gtggctcacttctgcagtcaggag 74610

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>emb|CR759945.8| Zebrafish DNA sequence from clone CH211-167E4 in linkage group 13,
             complete sequence
          Length = 146960

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ctataatgtgctgcaaattt 81
             ||||||||||||||||||||
Sbjct: 98547 ctataatgtgctgcaaattt 98566

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>gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosome 15, complete
             sequence
          Length = 190750

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   tggcagtaaaatggcctgag 481
             ||||||||||||||||||||
Sbjct: 30150 tggcagtaaaatggcctgag 30131

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>ref|XM_643029.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (557.t00002)
           partial mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 tgttgagagtcagacatctt 190
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

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>ref|XM_646196.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (172.t00002) partial mRNA
          Length = 2397

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 tgttgagagtcagacatctt 190
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

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>ref|XM_649852.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (40.t00005) partial mRNA
          Length = 2784

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 tgttgagagtcagacatctt 190
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

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>ref|XM_650868.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (20.t00003) partial mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 tgttgagagtcagacatctt 190
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

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>emb|Z85997.1|HSU101D3 Human DNA sequence from clone LL0XNC01-101D3 on chromosome X, complete
             sequence
          Length = 40600

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 547   gtggctcacttctgcattcaggag 570
             |||||||||||||||| |||||||
Sbjct: 20882 gtggctcacttctgcagtcaggag 20859

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>emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on chromosome 13 Contains a
             novel heterogeneous nuclear ribonucleoprotein family A
             protein and a novel gene, complete sequence
          Length = 168897

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 636   tttctgtatggtttctgcag 655
             ||||||||||||||||||||
Sbjct: 96542 tttctgtatggtttctgcag 96561

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>gb|AC090099.14| Homo sapiens chromosome 11, clone RP11-113D6, complete sequence
          Length = 172939

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgagaagacaactaaagaaa 145
             ||||||||||||||||||||
Sbjct: 12740 tgagaagacaactaaagaaa 12759

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>gb|AC113415.3| Homo sapiens chromosome 5 clone RP11-55N10, complete sequence
          Length = 170798

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    tttgcagaatgtaattaaaa 98
             ||||||||||||||||||||
Sbjct: 40956 tttgcagaatgtaattaaaa 40937

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>emb|AL929087.4| Zebrafish DNA sequence from clone CH211-226M16 in linkage group 23
              Contains three novel genes and a CpG island, complete
              sequence
          Length = 205160

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     tgctgcaaatttgcagaatg 89
              ||||||||||||||||||||
Sbjct: 198995 tgctgcaaatttgcagaatg 198976

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>gb|AC107948.7| Homo sapiens chromosome 11, clone RP11-81D23, complete sequence
          Length = 156839

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgagaagacaactaaagaaa 145
             ||||||||||||||||||||
Sbjct: 90888 tgagaagacaactaaagaaa 90907

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>gb|AC026741.6| Homo sapiens chromosome 5 clone CTD-2653M23, complete sequence
          Length = 195849

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    attggaaaaataccattcta 64
             ||||||||||||||||||||
Sbjct: 58900 attggaaaaataccattcta 58919

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>gb|AC154297.3| Mus musculus BAC clone RP23-427N21 from chromosome 13, complete sequence
          Length = 172087

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 636    tttctgtatggtttctgcagagaa 659
              |||||| |||||||||||||||||
Sbjct: 154345 tttctgaatggtttctgcagagaa 154368

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      gataaatagtgaaatgtatg 34
               ||||||||||||||||||||
Sbjct: 9514555 gataaatagtgaaatgtatg 9514536

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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   aaatctcattttcaagttct 252
             ||||||||||||||||||||
Sbjct: 15093 aaatctcattttcaagttct 15074

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>gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complete sequence
          Length = 197911

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tctcattttcaagttctctt 255
             ||||||||||||||||||||
Sbjct: 47540 tctcattttcaagttctctt 47521

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>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0424A08
          Length = 151294

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    gataaatagtgaaatgtatg 34
             ||||||||||||||||||||
Sbjct: 47984 gataaatagtgaaatgtatg 47965

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>emb|Z33352.1|MCAAO M.capricolum DNA for CONTIG MCAAO
          Length = 1629

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  aagacaactaaagaaagcaa 149
            ||||||||||||||||||||
Sbjct: 1408 aagacaactaaagaaagcaa 1427

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>emb|AL772273.11| Zebrafish DNA sequence from clone CH211-153P8, complete sequence
          Length = 171830

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    ctataatgtgctgcaaattt 81
             ||||||||||||||||||||
Sbjct: 33786 ctataatgtgctgcaaattt 33767

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>gb|AC153739.3| Aotus nancymaae clone CH258-485H7, complete sequence
          Length = 47312

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   acaaatctcattttcaagtt 250
             ||||||||||||||||||||
Sbjct: 36430 acaaatctcattttcaagtt 36411

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>gb|AE016854.1| Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete
             sequence
          Length = 67473

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    ctattggaaaaataccattc 62
             ||||||||||||||||||||
Sbjct: 36245 ctattggaaaaataccattc 36226

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>emb|AL645857.11| Mouse DNA sequence from clone RP23-167N2 on chromosome X, complete
              sequence
          Length = 137904

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     caaatttgcagaatgtaatt 94
              ||||||||||||||||||||
Sbjct: 120809 caaatttgcagaatgtaatt 120828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,919,290
Number of Sequences: 3902068
Number of extensions: 6919290
Number of successful extensions: 130880
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130595
Number of HSP's gapped (non-prelim): 273
length of query: 698
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 675
effective length of database: 17,143,297,704
effective search space: 11571725950200
effective search space used: 11571725950200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result