ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17g22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 157 2e-35
2gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 2.9
3emb|AL592169.14| Mouse DNA sequence from clone RP23-305P10 on ch... 40 2.9

>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  157 bits (79), Expect = 2e-35
 Identities = 93/98 (94%)
 Strand = Plus / Minus

                                                                         
Query: 119   ggtcatcaaggaggagaaacaccacggttgctcgcgccggcttcgtttggagacggntgc 178
             |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 25485 ggtcatcaaggaggagaaacaccacggttgctcgcgccggcttcatttggagacggttgc 25426

                                                   
Query: 179   cctagagaagggtcgtgcgatgccgctcgggagttatt 216
             ||| |||||||||| || ||||||||||||||||||||
Sbjct: 25425 cctggagaagggtcatgtgatgccgctcgggagttatt 25388



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    catcaaggaggagaaacacc 141
              ||||||||||||||||||||
Sbjct: 652317 catcaaggaggagaaacacc 652336



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>emb|AL592169.14| Mouse DNA sequence from clone RP23-305P10 on chromosome 15, complete
              sequence
          Length = 161985

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    aggagaaacaccacggttgc 149
              ||||||||||||||||||||
Sbjct: 159090 aggagaaacaccacggttgc 159109


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,076,238
Number of Sequences: 3902068
Number of extensions: 1076238
Number of successful extensions: 63704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63685
Number of HSP's gapped (non-prelim): 19
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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