ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17g19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YAJ1_SCHPO (Q09901) Putative family 31 glucosidase C30D11.01c pr... 30 1.2
2Y2065_PROMM (Q7V498) UPF0054 protein PMT2065 30 2.0
3AGLU_SCHPO (Q9C0Y4) Alpha-glucosidase precursor (EC 3.2.1.20) (M... 30 2.0
4MPTN_METMP (Q6LZC7) Tetrahydromethanopterin:alpha-L-glutamate li... 28 4.4
5OR2L8_HUMAN (Q8NGY9) Olfactory receptor 2L8 (Olfactory receptor ... 28 5.8
6S27A4_MACFA (Q4R3Y4) Long-chain fatty acid transport protein 4 (... 28 7.6
7DPOL_HBVW9 (P17100) P protein [Includes: DNA-directed DNA polyme... 28 7.6
8PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2... 28 7.6
9SNQ2_YEAST (P32568) Protein SNQ2 28 7.6
10GL34_ARATH (Q9FLT3) Putative germin-like protein subfamily 3 mem... 28 7.6
11ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Ac... 27 9.9
12ACRO_MOUSE (P23578) Acrosin precursor (EC 3.4.21.10) [Contains: ... 27 9.9
13YL673_MIMIV (Q5UNT1) Putative serine/threonine-protein kinase L6... 27 9.9
14DSBD_PANCI (Q9XDB2) Thiol:disulfide interchange protein dsbD pre... 27 9.9
15UBCD4_DROME (P52486) Ubiquitin-conjugating enzyme E2-22 kDa (EC ... 27 9.9

>YAJ1_SCHPO (Q09901) Putative family 31 glucosidase C30D11.01c precursor (EC|
           3.2.1.-)
          Length = 993

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -2

Query: 266 ETR*SAAALNIVTRNSHPRLLSMEGSLWLDFLSTHWLFSSLHQFDNSLNNLMKAVKDFLH 87
           E++ S  ALN +  N  P LLS    +     + HWL  +  Q+ + ++++   +   L 
Sbjct: 634 ESKISFEALNSIQPNIRPFLLSRSTFVGSGRYAAHWLGDNKSQWSDMVSSISSILTFNLL 693

Query: 86  GDKMVSWGVC 57
           G  MV   VC
Sbjct: 694 GIPMVGADVC 703



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>Y2065_PROMM (Q7V498) UPF0054 protein PMT2065|
          Length = 187

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 16  LTTLVXASSRRRP*HTPQLTILSPWRKSLTAFIK 117
           LT+LV A ++RR      LT  SPW++ LTA+I+
Sbjct: 25  LTSLVDADTKRR------LTHASPWQQDLTAWIE 52



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>AGLU_SCHPO (Q9C0Y4) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)|
          Length = 969

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = -2

Query: 266 ETR*SAAALNIVTRNSHPRLLSMEGSLWLDFLSTHWLFSSLHQFDNSLNNLMKAVKDFLH 87
           ET+ S AAL  ++ N  P +LS    L       HWL  +   + N   ++   +   + 
Sbjct: 609 ETKVSYAALTQISPNERPFILSRSTFLGSGVYGAHWLGDNHSLWSNMFFSISGMIVFNMM 668

Query: 86  GDKMVSWGVC 57
           G  MV   VC
Sbjct: 669 GIPMVGADVC 678



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>MPTN_METMP (Q6LZC7) Tetrahydromethanopterin:alpha-L-glutamate ligase (EC|
           6.3.2.-) (H(4)MPT:alpha-L-glutamate ligase)
          Length = 292

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -2

Query: 176 FLSTHWLFSSLHQFDNSLNNLMKAVKDFLHGDKMVSWGVCQGRRLDEAXTNV 21
           F STH +   + +F N+ NN+ + ++ F+ GDK++S      R  D   TN+
Sbjct: 166 FKSTHGVIY-MQEFVNNPNNVYRDIRAFVVGDKVIS---AMYRTSDNWITNI 213



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>OR2L8_HUMAN (Q8NGY9) Olfactory receptor 2L8 (Olfactory receptor OR1-46)|
          Length = 312

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
 Frame = -2

Query: 209 LLSMEGSL---WLDFLSTH------WLFSSLHQFD-NSLNNLM-KAVKDFLHGDKMVSWG 63
           L+++ G+L    L FL TH      +L S L   D N ++ ++ K   DFLHG+K +S+ 
Sbjct: 35  LMALIGNLSMILLIFLDTHLHTPMYFLLSQLSLIDLNYISTIVPKMASDFLHGNKSISFT 94

Query: 62  VC 57
            C
Sbjct: 95  GC 96



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>S27A4_MACFA (Q4R3Y4) Long-chain fatty acid transport protein 4 (EC 6.2.1.-)|
           (Fatty acid transport protein 4) (FATP-4) (Solute
           carrier family 27 member 4)
          Length = 643

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 278 CLRRETR*SAAALNIVTRNSHPRLLSMEGSLWLDFLSTHWLFSSLHQFDNSLNNLMKA 105
           CLR          + V R+     L  EG+       THW F  L ++ +S+ N ++A
Sbjct: 69  CLRERRTVPILFASTVRRHPDKTALIFEGT------DTHWTFRQLDEYSSSVANFLQA 120



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>DPOL_HBVW9 (P17100) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 845

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 178 SSHKDPSIDKSLG*LFRVTIFNAAALHLVSLRRQNTS 288
           S H DPS++ S   L +  +  AA  HL + +RQ++S
Sbjct: 264 SGHVDPSVNNSSSCLRQSAVRKAAYSHLSTSKRQSSS 300



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>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor|
           (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin)
          Length = 1004

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   NXPHNISXGLIQTSSLTYPPAYHLVTMEKILNCLHQV 119
           + P NI   +  TS+LTYPPA  +   + +L  L ++
Sbjct: 184 SSPENILTYVAHTSALTYPPATRVKYPDNLLRPLSRL 220



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>SNQ2_YEAST (P32568) Protein SNQ2|
          Length = 1501

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 246 SIEYSHPKQSSQAFVYGGILVAGFLVYSLV 157
           S+ Y+ P  +S AF  GG+L    L YSL+
Sbjct: 538 SLFYNTPSSTSGAFSRGGVLYFALLYYSLM 567



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>GL34_ARATH (Q9FLT3) Putative germin-like protein subfamily 3 member 4|
           precursor
          Length = 210

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 237 YSHPKQSSQAFVYGGILVAGFLVYSLVIF 151
           +SHP+ S   FV  G++ AGF+  +  IF
Sbjct: 106 HSHPRSSEMLFVVKGVVFAGFVDTNNKIF 134



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>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 437

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 245 ALNIVTRNSHPRLLSMEGSLWLDFLSTHWLFSSLHQFDN 129
           +L I T ++  R  +  GSL    L++HW+ ++ H FDN
Sbjct: 59  SLQIFTSHNSRRYHACGGSL----LNSHWVLTAAHCFDN 93



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>ACRO_MOUSE (P23578) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 436

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 245 ALNIVTRNSHPRLLSMEGSLWLDFLSTHWLFSSLHQFDN 129
           +L I T ++  R  +  GSL    L++HW+ ++ H FDN
Sbjct: 59  SLQIFTSHNSRRYHACGGSL----LNSHWVLTAAHCFDN 93



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>YL673_MIMIV (Q5UNT1) Putative serine/threonine-protein kinase L673 (EC|
           2.7.11.1)
          Length = 545

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -2

Query: 239 NIVTRNSHPRLLSMEGSLWLDFLSTHWLFSSLHQFDNSL------NNLMKAVK 99
           N++  + HP ++++EG  + D  ST  ++  L   D SL      NN+ +++K
Sbjct: 311 NLMILSGHPNIINIEGYYYWDLTST--MYIGLDLMDTSLAIYLTKNNISESLK 361



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>DSBD_PANCI (Q9XDB2) Thiol:disulfide interchange protein dsbD precursor (EC|
           1.8.1.8) (Protein-disulfide reductase) (Disulfide
           reductase)
          Length = 578

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 171 QEIQPQGSLHRQKPGMTVSGDYIQCCSTSSCLSPQTKHV 287
           Q++Q   +L    PG T+   Y  C +   C  P+T+ V
Sbjct: 101 QDVQIPVTLKSTLPGATLKISYQGCAAAGFCYPPETREV 139



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>UBCD4_DROME (P52486) Ubiquitin-conjugating enzyme E2-22 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
          Length = 199

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 242 LNIVTRNSHPRLLSMEGSLWLDFLSTHW 159
           +  +TR  HP + S+ G++ LD L  +W
Sbjct: 73  VRFITRIWHPNISSVTGAICLDILKDNW 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,695,521
Number of Sequences: 219361
Number of extensions: 854934
Number of successful extensions: 2503
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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