ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17g19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131A22, full insert sequence Length = 1403 Score = 210 bits (106), Expect = 2e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 137 actggtgaagagaagaaaataaccaatgagtagacaagaaatccagccacaaggatccct 196 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 999 actggtgaagagaagaaaataaccaaagagtagacaagaaatccagccagaaggatccct 940 Query: 197 ccatagacaaaagcctgggatgactgtttcgggtgactatattcaatgctgcagcacttc 256 || || ||||| ||||| |||||||| || |||||| |||||||||| |||| |||||| Sbjct: 939 ccgtaaacaaacgcctgtgatgactgcttggggtgattatattcaatagtgcaacacttc 880 Query: 257 atcttgtctctctccgcagacaaaacacgtcctacatactgttcggtaaatatagtgctc 316 ||||||||||| ||||||||||| |||||| |||| ||||| | ||||||||||||||| Sbjct: 879 atcttgtctctttccgcagacaatacacgttctacgtactgctgtgtaaatatagtgctc 820 Query: 317 tg 318 || Sbjct: 819 tg 818
>gb|BT018243.1| Zea mays clone EL01N0563C04.c mRNA sequence Length = 1469 Score = 192 bits (97), Expect = 5e-46 Identities = 127/137 (92%) Strand = Plus / Minus Query: 134 cgaactggtgaagagaagaaaataaccaatgagtagacaagaaatccagccacaaggatc 193 ||||| |||||||||||||||||||||| ||| || |||||||||||||||| ||||||| Sbjct: 1397 cgaacaggtgaagagaagaaaataaccagtgaatacacaagaaatccagccagaaggatc 1338 Query: 194 cctccatagacaaaagcctgggatgactgtttcgggtgactatattcaatgctgcagcac 253 ||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||| Sbjct: 1337 cctccatagacaaaagcctgggatgactgctttggatgactatattcaatgctacagcat 1278 Query: 254 ttcatcttgtctctctc 270 ||||||||||||||||| Sbjct: 1277 ttcatcttgtctctctc 1261
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 7e-45 Identities = 140/155 (90%) Strand = Plus / Minus Query: 137 actggtgaagagaagaaaataaccaatgagtagacaagaaatccagccacaaggatccct 196 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 11053812 actggtgaagagaagaaaataaccaaagagtagacaagaaatccagccagaaggatccct 11053753 Query: 197 ccatagacaaaagcctgggatgactgtttcgggtgactatattcaatgctgcagcacttc 256 || || ||||| ||||| |||||||| || |||||| |||||||||| |||| |||||| Sbjct: 11053752 ccgtaaacaaacgcctgtgatgactgcttggggtgattatattcaatagtgcaacacttc 11053693 Query: 257 atcttgtctctctccgcagacaaaacacgtcctac 291 ||||||||||| ||||||||||| |||||| |||| Sbjct: 11053692 atcttgtctctttccgcagacaatacacgttctac 11053658
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 188 bits (95), Expect = 7e-45 Identities = 140/155 (90%) Strand = Plus / Plus Query: 137 actggtgaagagaagaaaataaccaatgagtagacaagaaatccagccacaaggatccct 196 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 79310 actggtgaagagaagaaaataaccaaagagtagacaagaaatccagccagaaggatccct 79369 Query: 197 ccatagacaaaagcctgggatgactgtttcgggtgactatattcaatgctgcagcacttc 256 || || ||||| ||||| |||||||| || |||||| |||||||||| |||| |||||| Sbjct: 79370 ccgtaaacaaacgcctgtgatgactgcttggggtgattatattcaatagtgcaacacttc 79429 Query: 257 atcttgtctctctccgcagacaaaacacgtcctac 291 ||||||||||| ||||||||||| |||||| |||| Sbjct: 79430 atcttgtctctttccgcagacaatacacgttctac 79464
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 7e-45 Identities = 140/155 (90%) Strand = Plus / Minus Query: 137 actggtgaagagaagaaaataaccaatgagtagacaagaaatccagccacaaggatccct 196 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 11050575 actggtgaagagaagaaaataaccaaagagtagacaagaaatccagccagaaggatccct 11050516 Query: 197 ccatagacaaaagcctgggatgactgtttcgggtgactatattcaatgctgcagcacttc 256 || || ||||| ||||| |||||||| || |||||| |||||||||| |||| |||||| Sbjct: 11050515 ccgtaaacaaacgcctgtgatgactgcttggggtgattatattcaatagtgcaacacttc 11050456 Query: 257 atcttgtctctctccgcagacaaaacacgtcctac 291 ||||||||||| ||||||||||| |||||| |||| Sbjct: 11050455 atcttgtctctttccgcagacaatacacgttctac 11050421
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 188 bits (95), Expect = 7e-45 Identities = 140/155 (90%) Strand = Plus / Minus Query: 137 actggtgaagagaagaaaataaccaatgagtagacaagaaatccagccacaaggatccct 196 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 97297 actggtgaagagaagaaaataaccaaagagtagacaagaaatccagccagaaggatccct 97238 Query: 197 ccatagacaaaagcctgggatgactgtttcgggtgactatattcaatgctgcagcacttc 256 || || ||||| ||||| |||||||| || |||||| |||||||||| |||| |||||| Sbjct: 97237 ccgtaaacaaacgcctgtgatgactgcttggggtgattatattcaatagtgcaacacttc 97178 Query: 257 atcttgtctctctccgcagacaaaacacgtcctac 291 ||||||||||| ||||||||||| |||||| |||| Sbjct: 97177 atcttgtctctttccgcagacaatacacgttctac 97143
>gb|AY112177.1| Zea mays CL2576_1 mRNA sequence Length = 854 Score = 184 bits (93), Expect = 1e-43 Identities = 126/137 (91%) Strand = Plus / Plus Query: 134 cgaactggtgaagagaagaaaataaccaatgagtagacaagaaatccagccacaaggatc 193 ||||| |||||||||||||||||||||| ||| || |||| ||||||||||| ||||||| Sbjct: 234 cgaacaggtgaagagaagaaaataaccagtgaatacacaataaatccagccagaaggatc 293 Query: 194 cctccatagacaaaagcctgggatgactgtttcgggtgactatattcaatgctgcagcac 253 ||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||| Sbjct: 294 cctccatagacaaaagcctgggatgactgctttggatgactatattcaatgctacagcat 353 Query: 254 ttcatcttgtctctctc 270 ||||||||||||||||| Sbjct: 354 ttcatcttgtctctctc 370
>gb|AC022235.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-121E15, complete sequence Length = 197761 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tgcagcacttcatcttgtct 265 |||||||||||||||||||| Sbjct: 72789 tgcagcacttcatcttgtct 72808
>emb|CR384078.17| Zebrafish DNA sequence from clone DKEY-251E16 in linkage group 6, complete sequence Length = 181633 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 acttcatcttgtctctctcc 271 |||||||||||||||||||| Sbjct: 15770 acttcatcttgtctctctcc 15751
>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence Length = 184952 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gtgaagagaagaaaataaccaatg 164 |||||||||||||||||| ||||| Sbjct: 147069 gtgaagagaagaaaataaacaatg 147092
>gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 14, complete sequence Length = 223640 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cagcacttcatcttgtctct 267 |||||||||||||||||||| Sbjct: 153370 cagcacttcatcttgtctct 153389
>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17, complete sequence Length = 254336 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gtgaagagaagaaaataaccaatg 164 |||||||||||||||||| ||||| Sbjct: 180512 gtgaagagaagaaaataaacaatg 180489
>gb|AC027288.26| Homo sapiens 12 BAC RP11-359M6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177080 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gtagacaagaaatccagcca 185 |||||||||||||||||||| Sbjct: 35456 gtagacaagaaatccagcca 35475
>dbj|AK031530.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030447I17 product:unclassifiable, full insert sequence Length = 2400 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 cagcacttcatcttgtctct 267 |||||||||||||||||||| Sbjct: 1784 cagcacttcatcttgtctct 1765
>emb|BX649314.6| Zebrafish DNA sequence from clone DKEYP-111A3 in linkage group 23, complete sequence Length = 170403 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gaagagaagaaaataaccaa 162 |||||||||||||||||||| Sbjct: 63863 gaagagaagaaaataaccaa 63882
>dbj|AP003031.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-535A19, complete sequences Length = 95585 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 gaaaataaccaatgagtaga 170 |||||||||||||||||||| Sbjct: 79607 gaaaataaccaatgagtaga 79588 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,674,448 Number of Sequences: 3902068 Number of extensions: 2674448 Number of successful extensions: 50065 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50013 Number of HSP's gapped (non-prelim): 52 length of query: 318 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 296 effective length of database: 17,147,199,772 effective search space: 5075571132512 effective search space used: 5075571132512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
