>ELOF1_ORYSA (Q8LHP0) Transcription elongation factor 1 homolog|
          Length = 89

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 36/47 (76%), Positives = 39/47 (82%)
 Frame = -3

Query: 315 LIGEANCQICQESFSTXANALXEAIDIYSEWIDECERVNTVXXXDGA 175
           LIGEA+C+ICQE+FST  NAL E IDIYSEWIDECERVN V   DGA
Sbjct: 43  LIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDDDGA 89

>ELOF1_ARATH (Q8LEF3) Transcription elongation factor 1 homolog|
          Length = 120

 Score = 70.9 bits (172), Expect = 8e-13
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = -3

Query: 315 LIGEANCQICQESFSTXANALXEAIDIYSEWIDECERVNT 196
           LIG+A C+IC+ESFST   AL EAIDIYSEWIDECERVNT
Sbjct: 43  LIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNT 82

>ELOF1_CAEEL (Q9XVZ8) Transcription elongation factor 1 homolog|
          Length = 84

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = -3

Query: 312 IGEANCQICQESFSTXANALXEAIDIYSEWIDECERVN 199
           +G  +C++C E F T  N L E ID+YS+W+D CE+ N
Sbjct: 45  VGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQAN 82

>ELOF1_ENCCU (Q8STS7) Transcription elongation factor 1 homolog|
          Length = 80

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -3

Query: 309 GEANCQICQESFSTXANALXEAIDIYSEWIDEC 211
           G ANC +C+ SF+  AN L   ID+YS W+DEC
Sbjct: 45  GFANCSVCEASFACDANKLTTGIDVYSAWVDEC 77

>ELF1_YEAST (P36053) Transcription elongation factor 1|
          Length = 145

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = -3

Query: 312 IGEANCQICQESFSTXANALXEAIDIYSEWIDECERVNT 196
           IG  +C+IC +SF T  N+L + +D+YS+W D  E VN+
Sbjct: 44  IGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82

>ELOF1_MANSE (Q9U501) Transcription elongation factor 1 homolog|
          Length = 82

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -3

Query: 297 CQICQESFSTXANALXEAIDIYSEWIDECERVN 199
           C +C E F T  N L E ID+Y++W+D CE  N
Sbjct: 50  CTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82

>ELOF1_DROME (Q8MQI6) Transcription elongation factor 1 homolog|
          Length = 82

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -3

Query: 297 CQICQESFSTXANALXEAIDIYSEWIDECERVN 199
           C++C E F T  N L E ID+Y++W+D CE  N
Sbjct: 50  CRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82

>ELOF1_MOUSE (P60003) Transcription elongation factor 1 homolog|
          Length = 83

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 309 GEANCQICQESFSTXANALXEAIDIYSEWIDECERVN 199
           G  +C +C E F T    L E +D+YS+WID CE  N
Sbjct: 46  GVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82

>ELOF1_HUMAN (P60002) Transcription elongation factor 1 homolog|
          Length = 83

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 309 GEANCQICQESFSTXANALXEAIDIYSEWIDECERVN 199
           G  +C +C E F T    L E +D+YS+WID CE  N
Sbjct: 46  GVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82

>ELOF1_SCHPO (O13868) Transcription elongation factor 1 homolog|
          Length = 107

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 312 IGEANCQICQESFSTXANALXEAIDIYSEWIDECERV 202
           +G  +C+IC +S      AL   ID+YS+WID C+ V
Sbjct: 44  VGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAV 80

>RF1_BORPE (Q7W023) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 163 HTCSCTIIIXDSVDALT--LINPFAVYINSFXQRICXGAEAFLADLTISLTN 312
           HT +CT+ +    DA++  +INP  + I++F      G      D  + +T+
Sbjct: 197 HTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKTDSAVRITH 248

>RF1_BORPA (Q7WCE3) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 163 HTCSCTIIIXDSVDALT--LINPFAVYINSFXQRICXGAEAFLADLTISLTN 312
           HT +CT+ +    DA++  +INP  + I++F      G      D  + +T+
Sbjct: 197 HTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKTDSAVRITH 248

>RF1_BORBR (Q7WQE9) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 163 HTCSCTIIIXDSVDALT--LINPFAVYINSFXQRICXGAEAFLADLTISLTN 312
           HT +CT+ +    DA++  +INP  + I++F      G      D  + +T+
Sbjct: 197 HTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKTDSAVRITH 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,002,541
Number of Sequences: 219361
Number of extensions: 487323
Number of successful extensions: 981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)