ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17g16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193086.2| Oryza sativa (japonica cultivar-group), mRNA 86 8e-14
2dbj|AK061633.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 8e-14
3gb|BT018083.1| Zea mays clone EL01N0552A10.c mRNA sequence 84 3e-13
4gb|AY109647.1| Zea mays CL5260_1 mRNA sequence 84 3e-13
5dbj|AK120972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
7dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
8gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.1
9gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 4.2
10gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, comp... 40 4.2
11dbj|AK120292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
12emb|AL824711.14| Mouse DNA sequence from clone RP23-112I20 on ch... 40 4.2
13emb|AL773526.11| Mouse DNA sequence from clone RP23-181M13 on ch... 40 4.2 
>ref|NM_193086.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 728

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 102/123 (82%)
 Strand = Plus / Minus

                                                                       
Query: 169 tgctcatgcaccatcatcatcttngacagtgttgacgcgctcacactcatcaatccattc 228
           ||||||||| || || || |||| |||| ||||||| ||||| |||||||||||||||||
Sbjct: 465 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 406

                                                                       
Query: 229 gctgtatatatcaatagcttcanncagcgcatttgcantggtgctgaagctttcctggca 288
           ||| ||||| || || | ||||  ||| |||||  || ||||||||||| ||||||| ||
Sbjct: 405 gctatatatgtcgattggttcagtcagtgcattgacagtggtgctgaagttttcctgaca 346

              
Query: 289 gat 291
           |||
Sbjct: 345 gat 343
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>dbj|AK061633.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A04, full
           insert sequence
          Length = 728

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 102/123 (82%)
 Strand = Plus / Minus

                                                                       
Query: 169 tgctcatgcaccatcatcatcttngacagtgttgacgcgctcacactcatcaatccattc 228
           ||||||||| || || || |||| |||| ||||||| ||||| |||||||||||||||||
Sbjct: 465 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 406

                                                                       
Query: 229 gctgtatatatcaatagcttcanncagcgcatttgcantggtgctgaagctttcctggca 288
           ||| ||||| || || | ||||  ||| |||||  || ||||||||||| ||||||| ||
Sbjct: 405 gctatatatgtcgattggttcagtcagtgcattgacagtggtgctgaagttttcctgaca 346

              
Query: 289 gat 291
           |||
Sbjct: 345 gat 343
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>gb|BT018083.1| Zea mays clone EL01N0552A10.c mRNA sequence
          Length = 875

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                       
Query: 194 acagtgttgacgcgctcacactcatcaatccattcgctgtatatatcaatagcttcannc 253
           ||||||||||| ||||||||||||||||||||||| || |||||||||||||  |||   
Sbjct: 581 acagtgttgacacgctcacactcatcaatccattcactatatatatcaataggctcagtg 522

                                                  
Query: 254 agcgcatttgcantggtgctgaagctttcctggcagatt 292
           || |||||  || | ||||||||| ||||||| ||||||
Sbjct: 521 agtgcattaacagttgtgctgaagttttcctgacagatt 483
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>gb|AY109647.1| Zea mays CL5260_1 mRNA sequence
          Length = 1314

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                       
Query: 194 acagtgttgacgcgctcacactcatcaatccattcgctgtatatatcaatagcttcannc 253
           ||||||||||| ||||||||||||||||||||||| || |||||||||||||  |||   
Sbjct: 812 acagtgttgacacgctcacactcatcaatccattcactatatatatcaataggctcagtg 871

                                                  
Query: 254 agcgcatttgcantggtgctgaagctttcctggcagatt 292
           || |||||  || | ||||||||| ||||||| ||||||
Sbjct: 872 agtgcattaacagttgtgctgaagttttcctgacagatt 910
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>dbj|AK120972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041G12, full
           insert sequence
          Length = 770

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 101/123 (82%)
 Strand = Plus / Minus

                                                                       
Query: 169 tgctcatgcaccatcatcatcttngacagtgttgacgcgctcacactcatcaatccattc 228
           ||||||||| || || || |||  |||| ||||||| ||||| |||||||||||||||||
Sbjct: 470 tgctcatgctccgtcgtcgtctccgacattgttgacacgctcgcactcatcaatccattc 411

                                                                       
Query: 229 gctgtatatatcaatagcttcanncagcgcatttgcantggtgctgaagctttcctggca 288
           ||| ||||| || || | ||||  ||| |||||  || ||||||||||| ||||||| ||
Sbjct: 410 gctatatatgtcgattggttcagtcagtgcattgacagtggtgctgaagttttcctgaca 351

              
Query: 289 gat 291
           |||
Sbjct: 350 gat 348
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 169      tgctcatgcaccatcatcatcttngacagtgttgacgcgctcacactcatcaatccattc 228
                ||||||||| || || || |||| |||| ||||||| ||||| |||||||||||||||||
Sbjct: 26118576 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 26118517

                   
Query: 229      gct 231
                |||
Sbjct: 26118516 gct 26118514
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                         
Query: 169   tgctcatgcaccatcatcatcttngacagtgttgacgcgctcacactcatcaatccattc 228
             ||||||||| || || || |||| |||| ||||||| ||||| |||||||||||||||||
Sbjct: 10434 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 10375

                
Query: 229   gct 231
             |||
Sbjct: 10374 gct 10372
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 274     gaagctttcctggcagatttg 294
               |||||||||||||||||||||
Sbjct: 1743278 gaagctttcctggcagatttg 1743298
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   aatggtggcagtaaatgaca 131
             ||||||||||||||||||||
Sbjct: 81033 aatggtggcagtaaatgaca 81014
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>gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence
          Length = 174831

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   aatggtggcagtaaatgaca 131
             ||||||||||||||||||||
Sbjct: 32044 aatggtggcagtaaatgaca 32025
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>dbj|AK120292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050K04, full
           insert sequence
          Length = 876

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 198 tgttgacgcgctcacactcatcaatccattcgctgtatat 237
           |||| |||||||| || || || |||||||||||||||||
Sbjct: 345 tgttcacgcgctcgcattcgtcgatccattcgctgtatat 306
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>emb|AL824711.14| Mouse DNA sequence from clone RP23-112I20 on chromosome X, complete
             sequence
          Length = 118199

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 164   acacatgctcatgcaccatcatca 187
             ||||||||||||||||| ||||||
Sbjct: 98456 acacatgctcatgcaccgtcatca 98433
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>emb|AL773526.11| Mouse DNA sequence from clone RP23-181M13 on chromosome X, complete
             sequence
          Length = 175563

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   acacatgctcatgcaccatcatca 187
             ||||||||||||||||| ||||||
Sbjct: 48505 acacatgctcatgcaccgtcatca 48528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,864,842
Number of Sequences: 3902068
Number of extensions: 1864842
Number of successful extensions: 29323
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29292
Number of HSP's gapped (non-prelim): 31
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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