>ELOF1_ORYSA (Q8LHP0) Transcription elongation factor 1 homolog|
          Length = 89

 Score =  147 bits (371), Expect = 1e-35
 Identities = 67/73 (91%), Positives = 70/73 (95%)
 Frame = -1

Query: 475 DKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDE 296
           DKLDTVFSCPFCNHGSSVECRIDMKNLIGEA+C+ICQE+FSTT NALTE IDIYSEWIDE
Sbjct: 17  DKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDE 76

Query: 295 CERVNTVEDDDGA 257
           CERVN VEDDDGA
Sbjct: 77  CERVNNVEDDDGA 89

>ELOF1_ARATH (Q8LEF3) Transcription elongation factor 1 homolog|
          Length = 120

 Score =  132 bits (333), Expect = 3e-31
 Identities = 60/70 (85%), Positives = 65/70 (92%)
 Frame = -1

Query: 475 DKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDE 296
           DKLDT+FSCPFCNHGSSVEC IDMK+LIG+A C+IC+ESFSTT  ALTEAIDIYSEWIDE
Sbjct: 17  DKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDE 76

Query: 295 CERVNTVEDD 266
           CERVNT EDD
Sbjct: 77  CERVNTAEDD 86

>ELF1_YEAST (P36053) Transcription elongation factor 1|
          Length = 145

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
 Frame = -1

Query: 472 KLDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDEC 293
           KLDT F+C FCNH  SV C +D KN IG  +C+IC +SF T  N+L++ +D+YS+W D  
Sbjct: 18  KLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAV 77

Query: 292 ERVNT---VEDDDG 260
           E VN+    + DDG
Sbjct: 78  EEVNSGRGSDTDDG 91

>ELOF1_CAEEL (Q9XVZ8) Transcription elongation factor 1 homolog|
          Length = 84

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = -1

Query: 469 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDECE 290
           LDT F+CPFCNH    E ++D +  +G  +C++C E F T  N L+E ID+YS+W+D CE
Sbjct: 20  LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACE 79

Query: 289 RVN 281
           + N
Sbjct: 80  QAN 82

>ELOF1_MANSE (Q9U501) Transcription elongation factor 1 homolog|
          Length = 82

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 29/65 (44%), Positives = 39/65 (60%)
 Frame = -1

Query: 475 DKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDE 296
           + LD  F+CPFCNH  S E ++D         C +C E F TT N L+E ID+Y++W+D 
Sbjct: 18  EPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDA 77

Query: 295 CERVN 281
           CE  N
Sbjct: 78  CESAN 82

>ELOF1_DROME (Q8MQI6) Transcription elongation factor 1 homolog|
          Length = 82

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 28/65 (43%), Positives = 40/65 (61%)
 Frame = -1

Query: 475 DKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDE 296
           + LD  F+CPFCNH  S E ++D      +  C++C E F T  N L+E ID+Y++W+D 
Sbjct: 18  EPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDA 77

Query: 295 CERVN 281
           CE  N
Sbjct: 78  CETAN 82

>ELOF1_SCHPO (O13868) Transcription elongation factor 1 homolog|
          Length = 107

 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 29/62 (46%), Positives = 41/62 (66%)
 Frame = -1

Query: 469 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDECE 290
           LDT F+C FCNH  SV C +D ++ +G  +C+IC +S      AL+  ID+YS+WID C+
Sbjct: 19  LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACD 78

Query: 289 RV 284
            V
Sbjct: 79  AV 80

>ELOF1_ENCCU (Q8STS7) Transcription elongation factor 1 homolog|
          Length = 80

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 28/60 (46%), Positives = 40/60 (66%)
 Frame = -1

Query: 472 KLDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDEC 293
           +L+  F+CP CNH + V+C +    + G ANC +C+ SF+  AN LT  ID+YS W+DEC
Sbjct: 18  RLEKRFNCPVCNHENVVQCTVKKTLMKGFANCSVCEASFACDANKLTTGIDVYSAWVDEC 77

>ELOF1_MOUSE (P60003) Transcription elongation factor 1 homolog|
          Length = 83

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 28/63 (44%), Positives = 39/63 (61%)
 Frame = -1

Query: 469 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDECE 290
           L+T F+CPFCNH  S + ++D     G  +C +C E F T    L+E +D+YS+WID CE
Sbjct: 20  LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79

Query: 289 RVN 281
             N
Sbjct: 80  AAN 82

>ELOF1_HUMAN (P60002) Transcription elongation factor 1 homolog|
          Length = 83

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 28/63 (44%), Positives = 39/63 (61%)
 Frame = -1

Query: 469 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESFSTTANALTEAIDIYSEWIDECE 290
           L+T F+CPFCNH  S + ++D     G  +C +C E F T    L+E +D+YS+WID CE
Sbjct: 20  LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79

Query: 289 RVN 281
             N
Sbjct: 80  AAN 82

>FABH_GRATL (Q6B945) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 330

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 343 NALTEAIDIYSEWIDECERVNTVEDDDGA*ACVVIILYEL-NALMSF 206
           N L    D+ S+WID  +R   +   DGA A ++   YE  NA++ F
Sbjct: 134 NILIIGADVLSKWIDWSDRKTCILFGDGAGAAIIQACYEEDNAILGF 180

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 457 FSCPFCNHGSSVECRIDMKNLI--GEA--NCQICQESFSTTANALT 332
           F C  CN G +    +    L+  GE    CQ+C + FS+T+N  T
Sbjct: 634 FKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKT 679

>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 457 FSCPFCNHGSSVECRIDMKNLI--GEA--NCQICQESFSTTANALT 332
           F C  CN G +    +    L+  GE    CQ+C + FS+T+N  T
Sbjct: 567 FKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKT 612

>ATL5B_ARATH (Q9FLC6) Putative RING-H2 finger protein ATL5B precursor|
          Length = 176

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 466 DTVFSCPFCNHGSSVECRIDMKNLIGEANCQICQESF---STTANALTEAIDI 317
           +TV   P CNHG  V+C ID   L+  ++C  C++S     T AN      D+
Sbjct: 124 ETVRVLPKCNHGFHVKC-IDTW-LLSHSSCPTCRQSLLEHQTPANGSRRGDDV 174

>Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849|
          Length = 432

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 154 METLIGSLSCA*YTTDDIVYLSLSPGIAVEITPNLSTREEFVLMTC 17
           M+  + SL CA    D  + L    G  VE+TPN    +  ++ TC
Sbjct: 1   MKIGVVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTC 46

>BXF_CLOBO (P30996) Botulinum neurotoxin type F precursor (EC 3.4.24.69)|
           (BoNT/F) (Bontoxilysin F) [Contains: Botulinum
           neurotoxin F light chain; Botulinum neurotoxin F heavy
           chain]
          Length = 1274

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 272 FDSVDALTLINPFAVYINSFSQRICSGAEAFLADLTISLTNQILH 406
           F S++ +T    +    N  S    S  E+F+AD  ISL ++++H
Sbjct: 187 FGSINIVTFSPEYEYTFNDISGGHNSSTESFIADPAISLAHELIH 231

>RF1_BORPE (Q7W023) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 245 HTCSCTIIIFDSVDALT--LINPFAVYINSFSQRICSGAEAFLADLTISLTN 394
           HT +CT+ +    DA++  +INP  + I++F      G      D  + +T+
Sbjct: 197 HTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKTDSAVRITH 248

>RF1_BORPA (Q7WCE3) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 245 HTCSCTIIIFDSVDALT--LINPFAVYINSFSQRICSGAEAFLADLTISLTN 394
           HT +CT+ +    DA++  +INP  + I++F      G      D  + +T+
Sbjct: 197 HTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKTDSAVRITH 248

>RF1_BORBR (Q7WQE9) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 245 HTCSCTIIIFDSVDALT--LINPFAVYINSFSQRICSGAEAFLADLTISLTN 394
           HT +CT+ +    DA++  +INP  + I++F      G      D  + +T+
Sbjct: 197 HTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKTDSAVRITH 248

>PSTA_MYCGE (P47651) Phosphate transport system permease protein pstA homolog|
          Length = 654

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +3

Query: 9   YIKHVISTNSSRVLRFGVISTAIPGLKDKYT----ISSVVYQAQDKLPINVSIDQYTLTM 176
           YI  +I      +L F  I +A P   ++Y     IS+ +YQ    +P N+S     LT 
Sbjct: 268 YIFGIIILILVSLLNFFAIWSANPKTLERYPFLKKISNFIYQVVWFIPNNISALFVDLTS 327

Query: 177 LLQTWLMVAVNDINALS 227
             Q+   + VN+IN  S
Sbjct: 328 TRQSVKKIKVNNINERS 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,116,836
Number of Sequences: 219361
Number of extensions: 1163450
Number of successful extensions: 3174
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3173
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)