ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17g15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018083.1| Zea mays clone EL01N0552A10.c mRNA sequence 176 4e-41
2gb|AY109647.1| Zea mays CL5260_1 mRNA sequence 176 4e-41
3ref|NM_193086.2| Oryza sativa (japonica cultivar-group), mRNA 168 1e-38
4dbj|AK061633.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
5dbj|AK120972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 6e-34
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
7dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
8dbj|AK120292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
9ref|NM_123971.1| Arabidopsis thaliana unknown protein AT5G46030 ... 46 0.10
10gb|BT006515.1| Arabidopsis thaliana At5g46030 gene, complete cds 46 0.10
11emb|BX833577.1|CNS0A1VS Arabidopsis thaliana Full-length cDNA Co... 46 0.10
12emb|BX830337.1|CNS0A1YT Arabidopsis thaliana Full-length cDNA Co... 46 0.10
13gb|AY085452.1| Arabidopsis thaliana clone 15222 mRNA, complete s... 46 0.10
14gb|BT002010.1| Arabidopsis thaliana putative protein (At5g46030)... 46 0.10
15gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, co... 42 1.6
16gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, com... 42 1.6
17gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.6
18gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 6.4
19gb|AC027670.6| Homo sapiens chromosome 10 clone RP11-176H12, com... 40 6.4
20gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, comp... 40 6.4
21ref|NM_059593.3| Caenorhabditis elegans H06O01.2 (H06O01.2) mRNA... 40 6.4
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
23emb|BX834003.1|CNS0A1VY Arabidopsis thaliana Full-length cDNA Co... 40 6.4
24gb|AC069157.8| Homo sapiens BAC clone RP11-796M18 from 2, comple... 40 6.4
25gb|AF250324.1|AF250324 Homo sapiens chromosome 4q35 BAC clones R... 40 6.4
26dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
27emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chro... 40 6.4
28dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
29emb|Z92970.1|CEH06O01 Caenorhabditis elegans Fosmid H06O01, comp... 40 6.4
30emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.4
31emb|AL824711.14| Mouse DNA sequence from clone RP23-112I20 on ch... 40 6.4
32gb|AC133938.4| Mus musculus BAC clone RP23-399J17 from 3, comple... 40 6.4
33emb|AL773526.11| Mouse DNA sequence from clone RP23-181M13 on ch... 40 6.4 
>gb|BT018083.1| Zea mays clone EL01N0552A10.c mRNA sequence
          Length = 875

 Score =  176 bits (89), Expect = 4e-41
 Identities = 176/205 (85%)
 Strand = Plus / Minus

                                                                       
Query: 271 cttcgacagtgttgacgcgctcacactcatcaatccattcgctgtatatatcaatagctt 330
           |||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||  |
Sbjct: 586 cttcaacagtgttgacacgctcacactcatcaatccattcactatatatatcaataggct 527

                                                                       
Query: 331 cagtcagcgcatttgcagtggtgctgaagctttcctggcagatttgacaattagcctcac 390
           |||| || |||||  |||| ||||||||| ||||||| ||||||  ||||   || || |
Sbjct: 526 cagtgagtgcattaacagttgtgctgaagttttcctgacagattctacaagatgcttcgc 467

                                                                       
Query: 391 caatcagattcttcatatcaatccggcattcaacgctgctcccgtggttgcagaatgggc 450
           |||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct: 466 caatcagattcttcatgtcaattcggcactcaacactactcccgtggttgcagaatgggc 407

                                    
Query: 451 aggagaagaccgtatcgagcttgtc 475
           |||| ||||| || || ||||||||
Sbjct: 406 aggaaaagacagtgtcaagcttgtc 382
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>gb|AY109647.1| Zea mays CL5260_1 mRNA sequence
          Length = 1314

 Score =  176 bits (89), Expect = 4e-41
 Identities = 176/205 (85%)
 Strand = Plus / Plus

                                                                        
Query: 271  cttcgacagtgttgacgcgctcacactcatcaatccattcgctgtatatatcaatagctt 330
            |||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||  |
Sbjct: 807  cttcaacagtgttgacacgctcacactcatcaatccattcactatatatatcaataggct 866

                                                                        
Query: 331  cagtcagcgcatttgcagtggtgctgaagctttcctggcagatttgacaattagcctcac 390
            |||| || |||||  |||| ||||||||| ||||||| ||||||  ||||   || || |
Sbjct: 867  cagtgagtgcattaacagttgtgctgaagttttcctgacagattctacaagatgcttcgc 926

                                                                        
Query: 391  caatcagattcttcatatcaatccggcattcaacgctgctcccgtggttgcagaatgggc 450
            |||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct: 927  caatcagattcttcatgtcaattcggcactcaacactactcccgtggttgcagaatgggc 986

                                     
Query: 451  aggagaagaccgtatcgagcttgtc 475
            |||| ||||| || || ||||||||
Sbjct: 987  aggaaaagacagtgtcaagcttgtc 1011
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>ref|NM_193086.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 728

 Score =  168 bits (85), Expect = 1e-38
 Identities = 190/225 (84%)
 Strand = Plus / Minus

                                                                       
Query: 251 tgctcatgcaccatcatcatcttcgacagtgttgacgcgctcacactcatcaatccattc 310
           ||||||||| || || || ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 465 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 406

                                                                       
Query: 311 gctgtatatatcaatagcttcagtcagcgcatttgcagtggtgctgaagctttcctggca 370
           ||| ||||| || || | ||||||||| |||||  |||||||||||||| ||||||| ||
Sbjct: 405 gctatatatgtcgattggttcagtcagtgcattgacagtggtgctgaagttttcctgaca 346

                                                                       
Query: 371 gatttgacaattagcctcaccaatcagattcttcatatcaatccggcattcaacgctgct 430
           |||   |||   |||||| || ||||| |||||||||||||||||||||||||| || ||
Sbjct: 345 gatcctacatgaagcctcgccgatcaggttcttcatatcaatccggcattcaacactact 286

                                                        
Query: 431 cccgtggttgcagaatgggcaggagaagaccgtatcgagcttgtc 475
            || || ||||||||||||||||| || || ||||| ||||||||
Sbjct: 285 gccatgattgcagaatgggcaggaaaatacagtatcaagcttgtc 241
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>dbj|AK061633.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A04, full
           insert sequence
          Length = 728

 Score =  168 bits (85), Expect = 1e-38
 Identities = 190/225 (84%)
 Strand = Plus / Minus

                                                                       
Query: 251 tgctcatgcaccatcatcatcttcgacagtgttgacgcgctcacactcatcaatccattc 310
           ||||||||| || || || ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 465 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 406

                                                                       
Query: 311 gctgtatatatcaatagcttcagtcagcgcatttgcagtggtgctgaagctttcctggca 370
           ||| ||||| || || | ||||||||| |||||  |||||||||||||| ||||||| ||
Sbjct: 405 gctatatatgtcgattggttcagtcagtgcattgacagtggtgctgaagttttcctgaca 346

                                                                       
Query: 371 gatttgacaattagcctcaccaatcagattcttcatatcaatccggcattcaacgctgct 430
           |||   |||   |||||| || ||||| |||||||||||||||||||||||||| || ||
Sbjct: 345 gatcctacatgaagcctcgccgatcaggttcttcatatcaatccggcattcaacactact 286

                                                        
Query: 431 cccgtggttgcagaatgggcaggagaagaccgtatcgagcttgtc 475
            || || ||||||||||||||||| || || ||||| ||||||||
Sbjct: 285 gccatgattgcagaatgggcaggaaaatacagtatcaagcttgtc 241
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>dbj|AK120972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041G12, full
           insert sequence
          Length = 770

 Score =  153 bits (77), Expect = 6e-34
 Identities = 188/225 (83%)
 Strand = Plus / Minus

                                                                       
Query: 251 tgctcatgcaccatcatcatcttcgacagtgttgacgcgctcacactcatcaatccattc 310
           ||||||||| || || || ||| ||||| ||||||| ||||| |||||||||||||||||
Sbjct: 470 tgctcatgctccgtcgtcgtctccgacattgttgacacgctcgcactcatcaatccattc 411

                                                                       
Query: 311 gctgtatatatcaatagcttcagtcagcgcatttgcagtggtgctgaagctttcctggca 370
           ||| ||||| || || | ||||||||| |||||  |||||||||||||| ||||||| ||
Sbjct: 410 gctatatatgtcgattggttcagtcagtgcattgacagtggtgctgaagttttcctgaca 351

                                                                       
Query: 371 gatttgacaattagcctcaccaatcagattcttcatatcaatccggcattcaacgctgct 430
           |||   |||   |||||| || ||||| |||||||||||||||||||||||||| || ||
Sbjct: 350 gatcctacatgaagcctcgccgatcaggttcttcatatcaatccggcattcaacactact 291

                                                        
Query: 431 cccgtggttgcagaatgggcaggagaagaccgtatcgagcttgtc 475
            || || | ||||||||||||||| || || ||||| ||||||||
Sbjct: 290 gccatgatcgcagaatgggcaggaaaatacagtatcaagcttgtc 246
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 251      tgctcatgcaccatcatcatcttcgacagtgttgacgcgctcacactcatcaatccattc 310
                ||||||||| || || || ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 26118576 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 26118517

                   
Query: 311      gct 313
                |||
Sbjct: 26118516 gct 26118514



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 411      atccggcattcaacgctgctcccgtggttgcagaatgggcaggagaagaccgtatcgagc 470
                |||||||||||||| || || || || ||||||||||||||||| || || ||||| |||
Sbjct: 26117672 atccggcattcaacactactgccatgattgcagaatgggcaggaaaatacagtatcaagc 26117613

                     
Query: 471      ttgtc 475
                |||||
Sbjct: 26117612 ttgtc 26117608



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                            
Query: 346      cagtggtgctgaagctttcctggcagatttgacaattagcctcaccaatcagattcttca 405
                |||||||||||||| ||||||| |||||   |||   |||||| || ||||| |||||||
Sbjct: 26117825 cagtggtgctgaagttttcctgacagatcctacatgaagcctcgccgatcaggttcttca 26117766

                     
Query: 406      tatca 410
                |||||
Sbjct: 26117765 tatca 26117761
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 251   tgctcatgcaccatcatcatcttcgacagtgttgacgcgctcacactcatcaatccattc 310
             ||||||||| || || || ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 10434 tgctcatgctccgtcgtcgtcttcgacattgttgacacgctcgcactcatcaatccattc 10375

                
Query: 311   gct 313
             |||
Sbjct: 10374 gct 10372



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 411  atccggcattcaacgctgctcccgtggttgcagaatgggcaggagaagaccgtatcgagc 470
            |||||||||||||| || || || || ||||||||||||||||| || || ||||| |||
Sbjct: 9530 atccggcattcaacactactgccatgattgcagaatgggcaggaaaatacagtatcaagc 9471

                 
Query: 471  ttgtc 475
            |||||
Sbjct: 9470 ttgtc 9466



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 346  cagtggtgctgaagctttcctggcagatttgacaattagcctcaccaatcagattcttca 405
            |||||||||||||| ||||||| |||||   |||   |||||| || ||||| |||||||
Sbjct: 9683 cagtggtgctgaagttttcctgacagatcctacatgaagcctcgccgatcaggttcttca 9624

                 
Query: 406  tatca 410
            |||||
Sbjct: 9623 tatca 9619
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>dbj|AK120292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050K04, full
           insert sequence
          Length = 876

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgttgacgcgctcacactcatcaatccattcgctgtatatatcaatagcttcagtcagcg 339
           |||| |||||||| || || || ||||||||||||||||| || || | ||||||||| |
Sbjct: 345 tgttcacgcgctcgcattcgtcgatccattcgctgtatatgtcgatgggttcagtcagag 286

               
Query: 340 catt 343
           ||||
Sbjct: 285 catt 282



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                       
Query: 407 atcaatccggcattcaacgctgctcccgtggttgcagaatgggcaggagaagaccgtatc 466
           |||||| || || ||||| || || ||||||||||| ||||| ||| | ||||| |||||
Sbjct: 218 atcaatgcgacactcaacactacttccgtggttgcaaaatggacagcaaaagacagtatc 159

                    
Query: 467 gagcttgtc 475
            ||||||||
Sbjct: 158 aagcttgtc 150
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>ref|NM_123971.1| Arabidopsis thaliana unknown protein AT5G46030 mRNA, complete cds
          Length = 686

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 294 cactcatcaatccattcgctgtatatatcaatagcttcagtca 336
           |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 352 cactcatcgatccattcgctataaatgtctatagcttcagtca 310



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 accaatcagattcttcatatcaat 412
           ||||||||||| ||||||||||||
Sbjct: 257 accaatcagatgcttcatatcaat 234
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>gb|BT006515.1| Arabidopsis thaliana At5g46030 gene, complete cds
          Length = 363

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 294 cactcatcaatccattcgctgtatatatcaatagcttcagtca 336
           |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 230 cactcatcgatccattcgctataaatgtctatagcttcagtca 188



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 accaatcagattcttcatatcaat 412
           ||||||||||| ||||||||||||
Sbjct: 135 accaatcagatgcttcatatcaat 112
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>emb|BX833577.1|CNS0A1VS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL63ZA12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 654

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 294 cactcatcaatccattcgctgtatatatcaatagcttcagtca 336
           |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 317 cactcatcgatccattcgctataaatgtctatagcttcagtca 275



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 accaatcagattcttcatatcaat 412
           ||||||||||| ||||||||||||
Sbjct: 222 accaatcagatgcttcatatcaat 199
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>emb|BX830337.1|CNS0A1YT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB74ZC10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 659

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 294 cactcatcaatccattcgctgtatatatcaatagcttcagtca 336
           |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 322 cactcatcgatccattcgctataaatgtctatagcttcagtca 280
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>gb|AY085452.1| Arabidopsis thaliana clone 15222 mRNA, complete sequence
          Length = 687

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 294 cactcatcaatccattcgctgtatatatcaatagcttcagtca 336
           |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 352 cactcatcgatccattcgctataaatgtctatagcttcagtca 310



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 accaatcagattcttcatatcaat 412
           ||||||||||| ||||||||||||
Sbjct: 257 accaatcagatgcttcatatcaat 234
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>gb|BT002010.1| Arabidopsis thaliana putative protein (At5g46030) mRNA, complete
           cds
          Length = 672

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 294 cactcatcaatccattcgctgtatatatcaatagcttcagtca 336
           |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 336 cactcatcgatccattcgctataaatgtctatagcttcagtca 294



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 accaatcagattcttcatatcaat 412
           ||||||||||| ||||||||||||
Sbjct: 241 accaatcagatgcttcatatcaat 218
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>gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, complete sequence
          Length = 184760

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 6      gactatatcaaacatgtcataagta 30
              |||||||| ||||||||||||||||
Sbjct: 178322 gactatataaaacatgtcataagta 178346
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>gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, complete sequence
          Length = 207359

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 6     gactatatcaaacatgtcataagta 30
             |||||||| ||||||||||||||||
Sbjct: 30047 gactatataaaacatgtcataagta 30071
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 356     gaagctttcctggcagatttg 376
               |||||||||||||||||||||
Sbjct: 1743278 gaagctttcctggcagatttg 1743298
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   aatggtggcagtaaatgaca 213
             ||||||||||||||||||||
Sbjct: 81033 aatggtggcagtaaatgaca 81014
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>gb|AC027670.6| Homo sapiens chromosome 10 clone RP11-176H12, complete sequence
          Length = 191805

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tcaaacatgtcataagtaca 32
             ||||||||||||||||||||
Sbjct: 47229 tcaaacatgtcataagtaca 47248
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>gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence
          Length = 174831

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   aatggtggcagtaaatgaca 213
             ||||||||||||||||||||
Sbjct: 32044 aatggtggcagtaaatgaca 32025
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>ref|NM_059593.3| Caenorhabditis elegans H06O01.2 (H06O01.2) mRNA, complete cds
          Length = 4749

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  caccatcatcatcttcgaca 278
            ||||||||||||||||||||
Sbjct: 3013 caccatcatcatcttcgaca 2994
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 432     ccgtggttgcagaatgggcaggagaagaccgtatcgagcttgtc 475
               ||||||||||| ||||| ||| | ||||| ||||| ||||||||
Sbjct: 1817972 ccgtggttgcaaaatggacagcaaaagacagtatcaagcttgtc 1818015
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>emb|BX834003.1|CNS0A1VY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL8ZD11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 accaatcagattcttcatatcaat 412
           ||||||||||| ||||||||||||
Sbjct: 202 accaatcagatgcttcatatcaat 179
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>gb|AC069157.8| Homo sapiens BAC clone RP11-796M18 from 2, complete sequence
          Length = 138029

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 434   gtggttgcagaatgggcaggagaa 457
             ||||| ||||||||||||||||||
Sbjct: 52196 gtggtggcagaatgggcaggagaa 52219
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>gb|AF250324.1|AF250324 Homo sapiens chromosome 4q35 BAC clones RPCI-11-463J17 and
              RPCI-6-92G13RCB2, complete sequence
          Length = 245708

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 379    aattagcctcaccaatcagattct 402
              |||| |||||||||||||||||||
Sbjct: 119061 aattggcctcaccaatcagattct 119038
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>dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0030G11
          Length = 143943

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 432    ccgtggttgcagaatgggcaggagaagaccgtatcgagcttgtc 475
              ||||||||||| ||||| ||| | ||||| ||||| ||||||||
Sbjct: 135984 ccgtggttgcaaaatggacagcaaaagacagtatcaagcttgtc 136027
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>emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chromosome 2, complete
             sequence
          Length = 195442

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   taatggtggcagtaaatgacatca 216
             |||||||| |||||||||||||||
Sbjct: 84315 taatggtgacagtaaatgacatca 84292
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>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0585B01
          Length = 133231

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 432   ccgtggttgcagaatgggcaggagaagaccgtatcgagcttgtc 475
             ||||||||||| ||||| ||| | ||||| ||||| ||||||||
Sbjct: 54616 ccgtggttgcaaaatggacagcaaaagacagtatcaagcttgtc 54659
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>emb|Z92970.1|CEH06O01 Caenorhabditis elegans Fosmid H06O01, complete sequence
          Length = 18029

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  caccatcatcatcttcgaca 278
            ||||||||||||||||||||
Sbjct: 8799 caccatcatcatcttcgaca 8818
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     ggactatatcaaacatgtcataag 28
             |||||||| |||||||||||||||
Sbjct: 36992 ggactataccaaacatgtcataag 37015
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>emb|AL824711.14| Mouse DNA sequence from clone RP23-112I20 on chromosome X, complete
             sequence
          Length = 118199

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   acacatgctcatgcaccatcatca 269
             ||||||||||||||||| ||||||
Sbjct: 98456 acacatgctcatgcaccgtcatca 98433
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>gb|AC133938.4| Mus musculus BAC clone RP23-399J17 from 3, complete sequence
          Length = 208906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   gttgcagaatgggcaggaga 456
             ||||||||||||||||||||
Sbjct: 99210 gttgcagaatgggcaggaga 99191
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>emb|AL773526.11| Mouse DNA sequence from clone RP23-181M13 on chromosome X, complete
             sequence
          Length = 175563

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   acacatgctcatgcaccatcatca 269
             ||||||||||||||||| ||||||
Sbjct: 48505 acacatgctcatgcaccgtcatca 48528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,528,073
Number of Sequences: 3902068
Number of extensions: 3528073
Number of successful extensions: 59353
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59230
Number of HSP's gapped (non-prelim): 116
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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