ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17g12 |
|---|---|
| Clone Library Name | barley_pub |
>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 317 Score = 184 bits (467), Expect = 2e-46 Identities = 96/117 (82%), Positives = 103/117 (88%), Gaps = 1/117 (0%) Frame = -2 Query: 586 QSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETT 407 QSAKT+TKVSEMLGNVNTSGALSAFEKMEEKVM MESQAEALGQL DDLEGKFA+LET+ Sbjct: 201 QSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETS 260 Query: 406 SVDDDLAQMRKELSGSSLKGELPPGRTTTA-SKSGSPFRDTEIETELNELRKKTKEY 239 SVDDDLAQM+KE+SGSS KGELPPGRT + S + PFRD EIE ELNELRKK EY Sbjct: 261 SVDDDLAQMKKEISGSSSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY 317
>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor| (M30) Length = 323 Score = 181 bits (460), Expect = 1e-45 Identities = 94/119 (78%), Positives = 107/119 (89%), Gaps = 4/119 (3%) Frame = -2 Query: 586 QSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETT 407 QSAKTATKVSEMLGNVNTS ALSAFEKMEEKVMTMESQAEALGQL DDLEGKFAMLET+ Sbjct: 204 QSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETS 263 Query: 406 SVDDDLAQMRKELSGSSLKGELPPGR----TTTASKSGSPFRDTEIETELNELRKKTKE 242 SVDDDLA ++KEL+GSS KGELPPGR +TT++K+G+PFRD +IE EL +LRK++KE Sbjct: 264 SVDDDLANLKKELAGSSKKGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKRSKE 322
>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 330 Score = 170 bits (430), Expect = 3e-42 Identities = 83/116 (71%), Positives = 101/116 (87%) Frame = -2 Query: 586 QSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETT 407 ++AKTATKV EM+G VNTSGALSAFEKMEEKVM MES+A+AL Q+G D+LEGKF MLET+ Sbjct: 215 RTAKTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETS 274 Query: 406 SVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKEY 239 SVDDDLA ++KELSGSS KGELPPGR+T A+ + PF+D+EIE ELNELR+K ++ Sbjct: 275 SVDDDLADLKKELSGSSKKGELPPGRSTVAASTRYPFKDSEIENELNELRRKANDF 330
>Y617_SYNY3 (Q55707) Hypothetical protein sll0617| Length = 267 Score = 72.0 bits (175), Expect = 1e-12 Identities = 42/121 (34%), Positives = 73/121 (60%), Gaps = 9/121 (7%) Frame = -2 Query: 586 QSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETT 407 ++AK ++ + LG + TS A SAFE+ME KV+ ME+ ++A G+L +E +FA LE + Sbjct: 144 KAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEATSQAAGELAGFGIENQFAQLEAS 203 Query: 406 S-VDDDLAQMRKELSGSSLKG--------ELPPGRTTTASKSGSPFRDTEIETELNELRK 254 S V+D+LA ++ ++G +L G E P ++ + + S D I+ EL++LR+ Sbjct: 204 SGVEDELAALKASMAGGALPGTSAATPQLEAAPVDSSVPANNASQ-DDAVIDQELDDLRR 262 Query: 253 K 251 + Sbjct: 263 R 263
>PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog| Length = 223 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Frame = -2 Query: 586 QSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGAD-DLEGKFAML-E 413 Q+ +T +VS G GA+ AF +ME+KV ME + +A+G+L D D + + L Sbjct: 147 QAGETLDRVS---GFSKAGGAMDAFNEMEQKVAGMEDRNKAMGELRNDQDFDAQLKDLGR 203 Query: 412 TTSVDDDLAQMRKELSGSS 356 VDD LA ++ ++ S+ Sbjct: 204 DKDVDDALAALKAKVQSSN 222
>PSPA_BACSU (P54617) Phage shock protein A homolog| Length = 226 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 7/78 (8%) Frame = -2 Query: 580 AKTATKVSEMLGNVN-TSGALSAFEKMEEKVMTMESQAEALGQLGA------DDLEGKFA 422 AKT +++++ +V+ TS ++SAF +ME+KV QA A+ +L + DL K+ Sbjct: 145 AKTQERMNKLGASVSSTSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYD 204 Query: 421 MLETTSVDDDLAQMRKEL 368 ++ VDD+LA ++ ++ Sbjct: 205 TGGSSQVDDELAALKAKM 222
>NUF1_YEAST (P32380) Protein NUF1 (Spindle poly body spacer protein SPC110)| Length = 944 Score = 34.7 bits (78), Expect = 0.21 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Frame = -2 Query: 532 SGALSAFEKMEEKVMTMESQAEAL-GQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSS 356 SG + E+ME K+ +E + + + Q+ + L+ S +D+L + EL+ Sbjct: 223 SGCIEEREQMERKLAELERKLKTVKDQVLELENNSDVQSLKLRSKEDELKNLMNELN--- 279 Query: 355 LKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 242 EL KS + +DT++E + NELRK+T E Sbjct: 280 ---EL---------KSNAEEKDTQLEFKKNELRKRTNE 305
>KMHA_DICDI (P42527) Myosin heavy chain kinase A (EC 2.7.11.7) (MHCK A)| Length = 1146 Score = 32.0 bits (71), Expect = 1.4 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = -2 Query: 520 SAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGEL 341 S +K+EEK Q + L + L+ K ++ET +D +++RK S+ G L Sbjct: 275 SIIKKVEEKEKKKSEQNQLLFDSKIESLKDKIKIIETQQLDTS-SEVRKLKLESTSSGNL 333 Query: 340 PPGRTTTASK--SGSPFRDTEIETELNELRK 254 G T+ + S S F + + N + K Sbjct: 334 MAGLNGTSGRPSSSSHFIPSSVSAAANNINK 364
>UT14A_MOUSE (Q640M1) U3 small nucleolar RNA-associated protein 14 homolog A| (Juvenile spermatogonial depletion-like X-linked protein) (Jsd-like X-linked protein) Length = 767 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%) Frame = -2 Query: 580 AKTATKVSEMLGNVNTSGALSAFEKMEE----KVMTMESQ-----AEALGQLGADDLEGK 428 AK A K E L V+ AL EKME+ + M+++ Q A++ + DLE + Sbjct: 261 AKKALKDFEQLRKVDPDAALEELEKMEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEAR 320 Query: 427 FAMLETTSVDDDLAQMRKELSGSSLKG 347 AM E + + +L Q + +S S +G Sbjct: 321 QAMQEQLAKNKELTQKLQVVSESEEEG 347
>UT14A_HUMAN (Q9BVJ6) U3 small nucleolar RNA-associated protein 14 homolog A| (Antigen NY-CO-16) Length = 771 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%) Frame = -2 Query: 580 AKTATKVSEMLGNVNTSGALSAFEKMEE----KVMTMESQ-----AEALGQLGADDLEGK 428 AK A K E L VN + AL EK+E+ + M+++ Q A++ + DLE + Sbjct: 261 AKKALKEFEQLRKVNPAAALEELEKIEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEAR 320 Query: 427 FAMLETTSVDDDLAQMRKELSGS 359 AM E S + +L Q + S S Sbjct: 321 QAMQEQLSKNKELTQKLQVASES 343
>CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 31.2 bits (69), Expect = 2.3 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Frame = -2 Query: 583 SAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKFAMLE 413 +AKT V++ + T + F+K K+ MT E + L + G+DD E + Sbjct: 105 TAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI-- 162 Query: 412 TTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 260 V+ L ++ E+SG K +AS S S D EIE +L L Sbjct: 163 ---VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKSTISDEEIERQLKAL 210
>ATG16_ASPFU (Q4WVH5) Autophagy protein 16| Length = 172 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Frame = -2 Query: 532 SGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSL 353 S AL+A ++ E+ + + + ++ ++ + +G + T + K L+G S+ Sbjct: 9 SAALAARDRREKANVALYNASDRTSRIASTGAQGAQYLTGTGDKHTAIPAAGKSLAGPSV 68 Query: 352 KGELPPGRTTTA----SKSGSPFRDTEIETELNELRKKTKE 242 L R + ++S R TE+ TEL +LRK++ + Sbjct: 69 PDILAATRADLSEAQRARSELQARLTELSTELEKLRKRSTQ 109
>TAH18_CRYNE (Q5KER0) Probable NADPH reductase TAH18 (EC 1.-.-.-)| Length = 617 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/69 (28%), Positives = 28/69 (40%) Frame = -2 Query: 514 FEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPP 335 F+ + K T S Q DD+ M+E TS D++ + L L LPP Sbjct: 255 FDDPDTKPYTAGSICSLQPQSREDDVNMFLEMMELTSQADEVVTIESLLDEQPLPSHLPP 314 Query: 334 GRTTTASKS 308 T T +S Sbjct: 315 AGTPTTLRS 323
>HAM1_PROMP (Q7V316) HAM1 protein homolog| Length = 191 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = -2 Query: 313 KSGSPFRDTEIETELNELRKKTKEY*ILFTGHVCVARLDGTS*PKNPGSYS 161 ++G FR+ I+ + +E+ KKT+ Y I +C+ LDG PG YS Sbjct: 39 ENGITFRENAIK-KASEVSKKTRNYAIADDSGICIDALDG-----RPGIYS 83
>MPS1_BRARE (Q8AYG3) Mitotic checkpoint serine/threonine-protein kinase Mps1| (EC 2.7.12.2) (Monopolar spindle 1) (Nightcap protein) Length = 983 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = -3 Query: 351 KASFLRVEQPQPANPAALSGTQRLRRS*MSCERRPKSIRFYLQDMSVSPGLMEPPSRRT 175 K L E + + +AL TQ RRS +CE +P S + D SP P RT Sbjct: 174 KRQLLSHEDKENLSVSALDHTQGSRRSDGTCELKPSSTFLHSSDQKFSPQEENGPVWRT 232
>FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -2 Query: 556 EMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 383 E++ NV T+GA + FE+ + M ++ +LG EG AML S +++ Sbjct: 512 EIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISE 569
>FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -2 Query: 556 EMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 383 E++ NV T+GA + FE+ + M ++ +LG EG AML S +++ Sbjct: 512 EIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISE 569
>RAD50_AERPE (Q9YFZ1) DNA double-strand break repair rad50 ATPase| Length = 919 Score = 30.0 bits (66), Expect = 5.2 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 8/98 (8%) Frame = -2 Query: 511 EKMEEKVMTMESQAEALGQL---GADDLEGKFAMLETTSVDDDLAQMRKELSG-----SS 356 E+ EK+ T+ S+++ L ++ A+DL + + S+DD L + R+ L G S+ Sbjct: 600 EEAREKLKTLSSESKKLERMLVSKAEDLATRLGITAYRSLDDLLEKAREALEGVDKELSA 659 Query: 355 LKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 242 ++ L R + + ++ L EL + K+ Sbjct: 660 IERRLEEARRLKEEAAKLKWEAEQVMKRLEELEAEEKK 697
>Y205_MYCPN (P75571) Hypothetical protein MPN205 (GT9_orf438V)| Length = 438 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = -2 Query: 418 LETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKT 248 L+ + + D A+ ++L G K T+T ++ GS DT+++ E++KK+ Sbjct: 148 LKVKNAEADTAKSNEKLQGDESKSSNGSSSTSTTTQRGSTNSDTKVKALKIEVKKKS 204
>CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 30.0 bits (66), Expect = 5.2 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Frame = -2 Query: 583 SAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKFAMLE 413 +AKT V++ + T + F+K K+ MT E + L + G+DD E + Sbjct: 105 TAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI-- 162 Query: 412 TTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 260 V+ L ++ E+SG K +AS S + D EIE +L L Sbjct: 163 ---VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL 210
>CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) Length = 213 Score = 30.0 bits (66), Expect = 5.2 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Frame = -2 Query: 583 SAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKFAMLE 413 +AKT V++ + T + F+K K+ MT E + L + G+DD E + Sbjct: 105 TAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI-- 162 Query: 412 TTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 260 V+ L ++ E+SG K +AS S + D EIE +L L Sbjct: 163 ---VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL 210
>CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b| (Chromatin-modifying protein 2b) (CHMP2b) (CHMP2.5) (Vacuolar protein sorting 2-2) (Vps2-2) (hVps2-2) Length = 213 Score = 30.0 bits (66), Expect = 5.2 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Frame = -2 Query: 583 SAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKFAMLE 413 +AKT V++ + T + F+K K+ MT E + L + G+DD E + Sbjct: 105 TAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI-- 162 Query: 412 TTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 260 V+ L ++ E+SG K +AS S + D EIE +L L Sbjct: 163 ---VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL 210
>MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II heavy chain, non| muscle) Length = 2116 Score = 30.0 bits (66), Expect = 5.2 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 4/116 (3%) Frame = -2 Query: 577 KTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD 398 + ATK +G + E+ +QA+ LEG+ L D Sbjct: 1830 EAATKTQTEIGAAKLEDQIDELRSKLEQEQAKATQADK----SKKTLEGEIDNLRAQIED 1885 Query: 397 DDLAQMRKELSGSSLKGELPPGRTTTA----SKSGSPFRDTEIETELNELRKKTKE 242 + +MR E +L+GEL R T SKS + +E EL + R+ ++ Sbjct: 1886 EGKIKMRLEKEKRALEGELEELRETVEEAEDSKSEAEQSKRLVELELEDARRNLQK 1941
>FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)| Length = 1212 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 10/100 (10%) Frame = -2 Query: 511 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTS-----VDDDLAQMRKELS-----G 362 E+M K+ ES L +L L + LE T+ +++L ++R++++ Sbjct: 314 EEMNAKLANQESHNRQL-RLKLVGLSQRIEELEETNKSLQKAEEELQELREKIAKGECGN 372 Query: 361 SSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 242 SSL E+ R G T+ E + EL+KK +E Sbjct: 373 SSLMAEVESLRKRVLEMEGKDEEITKTEAQCRELKKKLQE 412
>Y1126_METTH (O27198) Hypothetical UPF0348 protein MTH1126| Length = 365 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%) Frame = -2 Query: 505 MEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLK---GELPP 335 +EE + S A ALG+LG D GKF +E ++R+ +S L+ G LPP Sbjct: 177 LEEDNYVITSLARALGKLGF-DFRGKFIFVERIGGVSG-TEIRRAVSDGDLQRVAGMLPP 234 Query: 334 GRTTTASK----SGSPFRDTEIETEL 269 S+ +P D +E E+ Sbjct: 235 ETMDVLSEEIEAGRAPLHDMRLEDEI 260
>SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) Length = 1217 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Frame = -2 Query: 517 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 356 + + +E + MES E+L DL + ++ + VD D++ Q+++E L Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 355 LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 254 +K E R T R ++E ELNELR+ Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) (Chromosome segregation protein SmcD) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) (Mad member-interacting protein 1) Length = 1217 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Frame = -2 Query: 517 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 356 + + +E + MES E+L DL + ++ + VD D++ Q+++E L Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 355 LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 254 +K E R T R ++E ELNELR+ Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) (Chromosome-associated polypeptide) (hCAP) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) Length = 1217 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Frame = -2 Query: 517 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 356 + + +E + MES E+L DL + ++ + VD D++ Q+++E L Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 355 LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 254 +K E R T R ++E ELNELR+ Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>CWF16_SCHPO (Q9P7C5) Cell cycle control protein cwf16| Length = 270 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Frame = -2 Query: 511 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGS-----SLKG 347 EK+E+K + + Q + L D+L K A ++DD +A ++++ GS S K Sbjct: 141 EKLEQKTLDTKRQMQISDAL--DELREKSARRSRVNIDDAIALLKEDAYGSIEEEESKKR 198 Query: 346 ELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 242 + +KS +D EI LN KE Sbjct: 199 KFEEEEIDREAKSLFSSQDGEIIRRLNAETTVEKE 233
>Y598_METMA (Q8PZ96) UPF0218 protein MM0598| Length = 195 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 380 EKRTVRELFERRASSG*NNHSQQIRQPFPGHRD 282 +K +R LFE+ S NN +IR+ GH+D Sbjct: 162 KKEEIRALFEKLISKNQNNELDKIRRILDGHKD 194
>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) Length = 1218 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Frame = -2 Query: 517 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 356 + + +E + MES E+L DL + ++ + VD D++ Q+++E L Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 355 LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 254 +K E R T R ++E ELNELR+ Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) (Chromosome segregation protein SmcD) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) Length = 1191 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Frame = -2 Query: 517 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMR---KELSGSS 356 + + +E + MES E+L DL + ++ + VD D++ Q++ ++L Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLPSQLSLEDQKRVDALNDEIRQLQQKNRQLLNER 818 Query: 355 LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 254 +K E R T R ++E ELNELR+ Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>SNF7_NEUCR (Q871Y8) Vacuolar sorting protein snf-7 (Vacuolar protein| sorting-associated protein vps-32) Length = 228 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 4/104 (3%) Frame = -2 Query: 550 LGNVNTS----GALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 383 LG + T A+ + E + M++ EA+G++ GK L VD+++A+ Sbjct: 82 LGQITTLEQQINAIESANINRETLAAMQAAREAMGKI-----HGK---LTPEKVDEEMAK 133 Query: 382 MRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKK 251 +++ + L E+ T++ G P + E+E EL +L+++ Sbjct: 134 LQE---ANDLSNEI--ATAITSANIGQPIDEGELEDELEKLQQE 172
>FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)| Length = 1213 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 10/100 (10%) Frame = -2 Query: 511 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTS-----VDDDLAQMRKELS-----G 362 E+M K+ ES L +L L + LE T+ +++L ++R +++ Sbjct: 315 EEMNAKLANQESHNRQL-RLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGN 373 Query: 361 SSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 242 SSL E+ R G T+ E++ ELRKK +E Sbjct: 374 SSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQE 413
>PHNC_TREDE (Q73P71) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 256 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = -2 Query: 568 TKVSEMLGNVNTSGALSAFEKMEEKVM-TMESQAEALGQLGADDLEGKFAMLETTSVDDD 392 +K+ + N N L+A E + + ++ S ALG ++ E FA+L+T +++ Sbjct: 80 SKIGMIFQNYNLVERLNAVENVLHGCLGSIPSYRGALGLYTEEEKEKAFALLQTVGMEEF 139 Query: 391 LAQMRKELSG 362 Q ELSG Sbjct: 140 AFQRCSELSG 149
>Y4479_BORBR (Q7WF01) UPF0271 protein BB4479| Length = 252 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = -3 Query: 204 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALF 106 G++ S RTP+ +ALQ +CI G +P + +F Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF 234
>Y4006_BORPA (Q7W3M5) UPF0271 protein BPP4006| Length = 252 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = -3 Query: 204 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALF 106 G++ S RTP+ +ALQ +CI G +P + +F Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF 234
>Y150_BORPE (O30444) UPF0271 protein BP0150| Length = 252 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = -3 Query: 204 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALF 106 G++ S RTP+ +ALQ +CI G +P + +F Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,799,246 Number of Sequences: 219361 Number of extensions: 1737690 Number of successful extensions: 5070 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 4910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5067 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
