ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17g10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein S3 mRNA, complete cds Length = 1004 Score = 145 bits (73), Expect = 6e-32 Identities = 121/137 (88%), Gaps = 2/137 (1%) Strand = Plus / Minus Query: 71 aggtaaccaaacgtngcatagcccac--ttgtcacaaggataggaaacaagctaggacca 128 |||||||||| ||| ||||||||| | || ||||| |||||| |||| ||||| ||||| Sbjct: 873 aggtaaccaagcgttgcatagccctcgcttatcacagggatagaaaactagctacgacca 814 Query: 129 aaatgatgtgccgtttcatggtctgnttgcactantgggagtttagacctcaatcaaagc 188 |||||||||| |||||||||||||| |||| ||| ||||| |||||||||||| |||||| Sbjct: 813 aaatgatgtgacgtttcatggtctgcttgctctactgggactttagacctcaaccaaagc 754 Query: 189 cggggggcgcagctcgt 205 ||||||||||||||||| Sbjct: 753 cggggggcgcagctcgt 737 Score = 52.0 bits (26), Expect = 7e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 2 aaacttagtttaaacgaaattaaaatggcagcat 35 ||||||||||||||||||||||| || ||||||| Sbjct: 941 aaacttagtttaaacgaaattaacatagcagcat 908
>gb|AF479033.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds Length = 240 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 171 ttagacctcaatcaaagccggggggcgcagctcgt 205 ||||||||||| ||||||||| ||||||||||||| Sbjct: 240 ttagacctcaaccaaagccggtgggcgcagctcgt 206
>emb|AL513332.9| Human DNA sequence from clone RP11-58B8 on chromosome 9, complete sequence Length = 124531 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 aaattaaaatggcagcataacata 41 |||||||||||| ||||||||||| Sbjct: 24006 aaattaaaatggaagcataacata 23983
>emb|AL356954.16| Human DNA sequence from clone RP11-520F24 on chromosome 13 Contains an HNRPA1 (heterogenous nuclear ribonucleoprotein A1) pseudogene, an ELL-related RNA polymerase II, elongation factor (ELL2) pseudogene and a ribosomal protein L37 (RPL37) pseudogene, complete sequence Length = 159235 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 aaattaaaatggcagcataacata 41 |||||||||||| ||||||||||| Sbjct: 146748 aaattaaaatggaagcataacata 146725
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aggaaacaagctaggaccaa 129 |||||||||||||||||||| Sbjct: 85738 aggaaacaagctaggaccaa 85719
>emb|BX842627.1| Neurospora crassa DNA linkage group I BAC clone B8J22 Length = 75335 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ataggaaacaagctaggacc 127 |||||||||||||||||||| Sbjct: 7696 ataggaaacaagctaggacc 7677
>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1341F06, from chromosome 10, complete sequence Length = 102520 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aggaaacaagctaggaccaa 129 |||||||||||||||||||| Sbjct: 88705 aggaaacaagctaggaccaa 88724
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aggaaacaagctaggaccaa 129 |||||||||||||||||||| Sbjct: 11277750 aggaaacaagctaggaccaa 11277731
>emb|CR555302.7| Zebrafish DNA sequence from clone CH211-212C19 in linkage group 10, complete sequence Length = 202469 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 attaaaatggcagcataaca 39 |||||||||||||||||||| Sbjct: 151367 attaaaatggcagcataaca 151386
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aggaaacaagctaggaccaa 129 |||||||||||||||||||| Sbjct: 11284190 aggaaacaagctaggaccaa 11284171
>emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, complete sequence Length = 187939 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 attaaaatggcagcataaca 39 |||||||||||||||||||| Sbjct: 56077 attaaaatggcagcataaca 56096 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,155,322 Number of Sequences: 3902068 Number of extensions: 1155322 Number of successful extensions: 66693 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66619 Number of HSP's gapped (non-prelim): 74 length of query: 205 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 183 effective length of database: 17,147,199,772 effective search space: 3137937558276 effective search space used: 3137937558276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
