>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 35/121 (28%), Positives = 39/121 (32%), Gaps = 11/121 (9%)
 Frame = -3

Query: 576  HRSCDQDQECGVHAFLPLPHAHPQRHRLVPLRPAHQGQIRRAPKHPWLHLRDDPDGPLHV 397
            H SC  D   G+      P   P      P R A  G  R  P  P    R     P H 
Sbjct: 1182 HLSCSHD---GLDGGWWAPPPPPWAAGPPPRRRARCGCPRPHPHRPRASHRAPAAAPHHH 1238

Query: 396  LHERDAGWWQ-----PMPRRGKRHGRCPQRXXXXXXXSARPTR------AHAPRCARSPR 250
             H R AG W      P  R  +    CP+         A PTR       HA RC  +  
Sbjct: 1239 RHRRAAGGWDFPPPAPTSRSLEDLSSCPR---------AAPTRRLTGPSRHARRCPHAAH 1289

Query: 249  W 247
            W
Sbjct: 1290 W 1290

>O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor OR1-67)|
          Length = 317

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -1

Query: 593 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 420
           + P  ++ +V+  +++ +   +    L LTL+   +FL GL+  D+YVA+ N L +   M
Sbjct: 77  IVPKMLVDQVMSQRAISFAGCTAQHFLYLTLAGAEFFLLGLMSYDRYVAICNPLHYPVLM 136

Query: 419 IQMVLYM 399
            + + ++
Sbjct: 137 SRKICWL 143

>OR2T1_HUMAN (O43869) Olfactory receptor 2T1 (Olfactory receptor 1-25) (OR1-25)|
           (Olfactory receptor OR1-61)
          Length = 311

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -1

Query: 593 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 420
           + P  ++  ++  +++ ++  +    L LTL    +FL GL+  D+YVA+ N L +   M
Sbjct: 76  IVPKMLVNYLLDQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPLRYPVLM 135

Query: 419 IQMVLYM 399
            + V +M
Sbjct: 136 SRRVCWM 142

>RS7_DEHSC (Q3ZZM7) 30S ribosomal protein S7|
          Length = 156

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 427 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 534
           +VKPR  G ATY + +  RP R QTMA+R  ++   K
Sbjct: 74  EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110

>RS7_DEHE1 (Q3Z984) 30S ribosomal protein S7|
          Length = 156

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 427 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 534
           +VKPR  G ATY + +  RP R QTMA+R  ++   K
Sbjct: 74  EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110

>Y110_METJA (Q57574) Hypothetical protein MJ0110|
          Length = 93

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 590 APLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILGFTF 426
           A L  + + +K K +  +  +  +T T    +W +YG+L  D  + + NIL   F
Sbjct: 23  ASLPQLIKSLKEKDMSNISLAFVITFTTGLTLWLIYGILRNDYPIIVFNILSLMF 77

>LEU2_AQUAE (O67078) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 432

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 462 IRRAPKHPWLHLRDDPDGPLHVLHERDAGWWQPM 361
           +++  K PW   + DPD   H ++E DA   +P+
Sbjct: 237 VKQRAKRPWKVYQSDPDAEYHSVYEWDASQIEPL 270

>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 240  SPAISVTGRTSAHELLSALPTLITTTWSSAGTFHASFPSL 359
            S A  V+G +S  E+ S+LP+    T+  +G FH +FP++
Sbjct: 1698 SGAAEVSGESSGAEVGSSLPS---GTYEGSGNFHPAFPTV 1734

>Y1376_HAEIN (P44170) Hypothetical protein HI1376|
          Length = 291

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 554 KSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGMIQMVLYMFYMNA 384
           KS    P +L ++ +L+A V F+Y  L + ++ +   I G   G++     +FY+ A
Sbjct: 174 KSGGAFPATLFISFSLAACVMFIYLFLKRVQWTSSSVIGGIVLGVLNFFNILFYIKA 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,756,653
Number of Sequences: 219361
Number of extensions: 1235950
Number of successful extensions: 3931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3928
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)