ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105872.1| Zea mays PCO079046 mRNA sequence Length = 1346 Score = 230 bits (116), Expect = 4e-57 Identities = 194/220 (88%) Strand = Plus / Minus Query: 377 ccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtgaagc 436 |||||||| |||||||||||||| |||||| |||||||||| || |||||| |||| | Sbjct: 899 ccggcgtcttgttcatgtagaacacgtagagcaccatctggaccacgccgaagatgaacc 840 Query: 437 caaggatgtttgggagcgcgacgtatttgtccttgatgagcaggccgtagaggaaccaga 496 | |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 839 ccaggacgtttggaagcgcgacgtatttgtccttgatgaggaggccgtagaggaaccaga 780 Query: 497 cgatggcgctgagggtgagcgtgagggagagggagaaaggcatgtactccacactcttgg 556 ||| ||||||||||||||||| ||||||||||||||| ||||||||||| || ||||| | Sbjct: 779 cgacggcgctgagggtgagcgagagggagagggagaagggcatgtactctacgctcttcg 720 Query: 557 tcttgatcacacgaccgatgatgctgagaggcgcgacgaa 596 ||| |||||| || | |||||||| || ||||||||||| Sbjct: 719 tctggatcacgcgcctcatgatgcttagtggcgcgacgaa 680
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 167 bits (84), Expect = 5e-38 Identities = 93/96 (96%) Strand = Plus / Plus Query: 453 cgcgacgtatttgtccttgatgagcaggccgtagaggaaccagacgatggcgctgagggt 512 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 17344003 cgcgacgtatttgtccttgatgagaaggccgtagaggaaccagacgacggcgctgagggt 17344062 Query: 513 gagcgtgagggagagggagaaaggcatgtactccac 548 ||||||||||||||||||||| |||||||||||||| Sbjct: 17344063 gagcgtgagggagagggagaagggcatgtactccac 17344098 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 377 ccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtgaagc 436 |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||||| Sbjct: 17343812 ccggcgtcgcgttcatgtagaacacgtagagccccatctggaccacaccgaatgtgaagc 17343871 Query: 437 caaggatgtt 446 | |||||||| Sbjct: 17343872 ccaggatgtt 17343881
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 167 bits (84), Expect = 5e-38 Identities = 93/96 (96%) Strand = Plus / Plus Query: 453 cgcgacgtatttgtccttgatgagcaggccgtagaggaaccagacgatggcgctgagggt 512 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 17298374 cgcgacgtatttgtccttgatgagaaggccgtagaggaaccagacgacggcgctgagggt 17298433 Query: 513 gagcgtgagggagagggagaaaggcatgtactccac 548 ||||||||||||||||||||| |||||||||||||| Sbjct: 17298434 gagcgtgagggagagggagaagggcatgtactccac 17298469 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 377 ccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtgaagc 436 |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||||| Sbjct: 17298183 ccggcgtcgcgttcatgtagaacacgtagagccccatctggaccacaccgaatgtgaagc 17298242 Query: 437 caaggatgtt 446 | |||||||| Sbjct: 17298243 ccaggatgtt 17298252
>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154826 Score = 167 bits (84), Expect = 5e-38 Identities = 93/96 (96%) Strand = Plus / Minus Query: 453 cgcgacgtatttgtccttgatgagcaggccgtagaggaaccagacgatggcgctgagggt 512 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 59366 cgcgacgtatttgtccttgatgagaaggccgtagaggaaccagacgacggcgctgagggt 59307 Query: 513 gagcgtgagggagagggagaaaggcatgtactccac 548 ||||||||||||||||||||| |||||||||||||| Sbjct: 59306 gagcgtgagggagagggagaagggcatgtactccac 59271 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 377 ccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtgaagc 436 |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||||| Sbjct: 59557 ccggcgtcgcgttcatgtagaacacgtagagccccatctggaccacaccgaatgtgaagc 59498 Query: 437 caaggatgtt 446 | |||||||| Sbjct: 59497 ccaggatgtt 59488
>gb|BT017471.1| Zea mays clone EL01N0408D01.c mRNA sequence Length = 1159 Score = 153 bits (77), Expect = 8e-34 Identities = 113/125 (90%) Strand = Plus / Minus Query: 424 ccgaaggtgaagccaaggatgtttgggagcgcgacgtatttgtccttgatgagcaggccg 483 |||||||||||||| || | |||||| || |||||||||||||||||||||||||||||| Sbjct: 487 ccgaaggtgaagccgagcacgtttggcagggcgacgtatttgtccttgatgagcaggccg 428 Query: 484 tagaggaaccagacgatggcgctgagggtgagcgtgagggagagggagaaaggcatgtac 543 |||||||||||||||| ||||||| |||||||| || |||||||||||| |||||| || Sbjct: 427 tagaggaaccagacgacggcgctggcggtgagcgagaaggagagggagaagggcatgaac 368 Query: 544 tccac 548 ||||| Sbjct: 367 tccac 363 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 573 gatgatgctgagaggcgcgacgaa 596 |||||||||||| ||||||||||| Sbjct: 338 gatgatgctgagcggcgcgacgaa 315
>dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071H09, full insert sequence Length = 1494 Score = 127 bits (64), Expect = 4e-26 Identities = 127/148 (85%) Strand = Plus / Minus Query: 410 ccatctggatcatcccgaaggtgaagccaaggatgtttgggagcgcgacgtatttgtcct 469 |||||||||| | ||||||| |||||| || | ||| || || ||||| |||||||||| Sbjct: 854 ccatctggatgacgccgaaggagaagcccagcacgttgggaagagcgacatatttgtcct 795 Query: 470 tgatgagcaggccgtagaggaaccagacgatggcgctgagggtgagcgtgagggagaggg 529 ||||||| |||||||||||||||||||||| |||||||| |||||| | || |||||| | Sbjct: 794 tgatgaggaggccgtagaggaaccagacgacggcgctgatggtgagggagaaggagagcg 735 Query: 530 agaaaggcatgtactccacactcttggt 557 |||| |||||| ||||||| |||||||| Sbjct: 734 agaacggcatgaactccacgctcttggt 707
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 454 gcgacgtatttgtccttgatgagcaggccgtagaggaaccagacgatggcgctgagggtg 513 ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct: 81975 gcgacatatttgtccttgatgaggaggccgtagaggaaccagacgacggcgctgatggtg 82034 Query: 514 agcgtgagggagagggagaaaggcatgtactccacactcttggt 557 || | || |||||| ||||| |||||| ||||||| |||||||| Sbjct: 82035 agggagaaggagagcgagaacggcatgaactccacgctcttggt 82078
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 454 gcgacgtatttgtccttgatgagcaggccgtagaggaaccagacgatggcgctgagggtg 513 ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct: 17574164 gcgacatatttgtccttgatgaggaggccgtagaggaaccagacgacggcgctgatggtg 17574223 Query: 514 agcgtgagggagagggagaaaggcatgtactccacactcttggt 557 || | || |||||| ||||| |||||| ||||||| |||||||| Sbjct: 17574224 agggagaaggagagcgagaacggcatgaactccacgctcttggt 17574267
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 454 gcgacgtatttgtccttgatgagcaggccgtagaggaaccagacgatggcgctgagggtg 513 ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct: 17667988 gcgacatatttgtccttgatgaggaggccgtagaggaaccagacgacggcgctgatggtg 17668047 Query: 514 agcgtgagggagagggagaaaggcatgtactccacactcttggt 557 || | || |||||| ||||| |||||| ||||||| |||||||| Sbjct: 17668048 agggagaaggagagcgagaacggcatgaactccacgctcttggt 17668091
>dbj|AK109114.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C05, full insert sequence Length = 1492 Score = 89.7 bits (45), Expect = 1e-14 Identities = 105/125 (84%) Strand = Plus / Minus Query: 472 atgagcaggccgtagaggaaccagacgatggcgctgagggtgagcgtgagggagagggag 531 ||||| |||||||||| ||||||||||| ||||||||||||||| || |||||| || Sbjct: 706 atgaggaggccgtagaagaaccagacgacggcgctgagggtgaggaagaaggagagccag 647 Query: 532 aaaggcatgtactccacactcttggtcttgatcacacgaccgatgatgctgagaggcgcg 591 || |||||| ||||||| ||||||||| ||||||| | | ||||||| |||| || ||| Sbjct: 646 aagggcatgaactccacgctcttggtcctgatcacttgcctgatgatggtgagcggggcg 587 Query: 592 acgaa 596 ||||| Sbjct: 586 acgaa 582
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 472 atgagcaggccgtagaggaaccagacgatggcgctgagggtgagcgtgagggagagggag 531 ||||| |||||||||| ||||||||||| ||||||||||||||| || |||||| || Sbjct: 12981206 atgaggaggccgtagaagaaccagacgacggcgctgagggtgaggaagaaggagagccag 12981265 Query: 532 aaaggcatgtactccacactcttggtcttgatcac 566 || |||||| ||||||| ||||||||| ||||||| Sbjct: 12981266 aagggcatgaactccacgctcttggtcctgatcac 12981300 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 522 ggagagggagaaaggcatgtactccac 548 |||||||||||| |||||||||||||| Sbjct: 12705184 ggagagggagaagggcatgtactccac 12705158
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 472 atgagcaggccgtagaggaaccagacgatggcgctgagggtgagcgtgagggagagggag 531 ||||| |||||||||| ||||||||||| ||||||||||||||| || |||||| || Sbjct: 12977981 atgaggaggccgtagaagaaccagacgacggcgctgagggtgaggaagaaggagagccag 12978040 Query: 532 aaaggcatgtactccacactcttggtcttgatcac 566 || |||||| ||||||| ||||||||| ||||||| Sbjct: 12978041 aagggcatgaactccacgctcttggtcctgatcac 12978075 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 522 ggagagggagaaaggcatgtactccac 548 |||||||||||| |||||||||||||| Sbjct: 12701947 ggagagggagaagggcatgtactccac 12701921
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 472 atgagcaggccgtagaggaaccagacgatggcgctgagggtgagcgtgagggagagggag 531 ||||| |||||||||| ||||||||||| ||||||||||||||| || |||||| || Sbjct: 58904 atgaggaggccgtagaagaaccagacgacggcgctgagggtgaggaagaaggagagccag 58963 Query: 532 aaaggcatgtactccacactcttggtcttgatcac 566 || |||||| ||||||| ||||||||| ||||||| Sbjct: 58964 aagggcatgaactccacgctcttggtcctgatcac 58998
>gb|BT017750.1| Zea mays clone EL01N0450B09.c mRNA sequence Length = 1251 Score = 63.9 bits (32), Expect = 6e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 448 gggagcgcgacgtatttgtccttgatgagcaggccgtagaggaaccagacgatggcgctg 507 ||||||| |||||| ||||||| ||| |||||||| | ||||||| ||| ||||||| Sbjct: 721 gggagcgtgacgtaggggtccttggtgaagaggccgtacaagaaccaggcgacggcgctg 662 Query: 508 agggtgagcgtgagggagagggagaaaggcatgtactccacactcttggtcttgatcaca 567 |||||||| || |||||||| ||| |||||| |||| ||||||| ||| |||||||| Sbjct: 661 agggtgaggaagaaggagagggtgaagggcatgaactcggcactcttcgtcctgatcaca 602
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 478 aggccgtagaggaaccagacgatggcgctgagggtgagcgtgagggagagggagaaaggc 537 |||||||||| ||||||| ||| ||||||||| ||||| || |||||| ||||| ||| Sbjct: 121181 aggccgtagaagaaccaggcgacggcgctgagcgtgaggaagaaggagagcgagaacggc 121240 Query: 538 atgtactccacactcttggtcttgatcac 566 ||| ||||| | || || ||||||||||| Sbjct: 121241 atgaactccgcgcttttcgtcttgatcac 121269
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 478 aggccgtagaggaaccagacgatggcgctgagggtgagcgtgagggagagggagaaaggc 537 |||||||||| ||||||| ||| ||||||||| ||||| || |||||| ||||| ||| Sbjct: 19401955 aggccgtagaagaaccaggcgacggcgctgagcgtgaggaagaaggagagcgagaacggc 19402014 Query: 538 atgtactccacactcttggtcttgatcac 566 ||| ||||| | || || ||||||||||| Sbjct: 19402015 atgaactccgcgcttttcgtcttgatcac 19402043
>ref|NM_113718.2| Arabidopsis thaliana unknown protein AT3G28007 mRNA, complete cds Length = 986 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 523 gagagggagaaaggcatgtactccacactcttggtcttgatcac 566 ||||| ||||| |||||||||| |||||| |||||||||||||| Sbjct: 595 gagagagagaatggcatgtacttcacacttttggtcttgatcac 552
>ref|NM_121320.2| Arabidopsis thaliana unknown protein AT5G13170 mRNA, complete cds Length = 1303 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcacacga 570 |||||||||||||||||||| ||||| ||||||||| Sbjct: 638 ggcatgtactccacactctttgtctttatcacacga 603
>gb|AY113934.1| Arabidopsis thaliana putative senescence-associated protein SAG29 (At5g13170) mRNA, complete cds Length = 910 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcacacga 570 |||||||||||||||||||| ||||| ||||||||| Sbjct: 503 ggcatgtactccacactctttgtctttatcacacga 468
>gb|AY045949.1| Arabidopsis thaliana putative senescence-associated protein SAG29 (At5g13170) mRNA, complete cds Length = 1291 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcacacga 570 |||||||||||||||||||| ||||| ||||||||| Sbjct: 639 ggcatgtactccacactctttgtctttatcacacga 604
>emb|AL391711.1|ATT19L5 Arabidopsis thaliana DNA chromosome 5, BAC clone T19L5 (ESSA project) Length = 82207 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 535 ggcatgtactccacactcttggtcttgatcacacga 570 |||||||||||||||||||| ||||| ||||||||| Sbjct: 55149 ggcatgtactccacactctttgtctttatcacacga 55184
>gb|AF428275.1|AF428275 Arabidopsis thaliana unknown protein mRNA, complete cds Length = 984 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 523 gagagggagaaaggcatgtactccacactcttggtcttgatcac 566 ||||| ||||| |||||||||| |||||| |||||||||||||| Sbjct: 592 gagagagagaatggcatgtacttcacacttttggtcttgatcac 549
>emb|BX829518.1|CNS0A267 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 936 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcacacga 570 |||||||||||||||||||| ||||| ||||||||| Sbjct: 450 ggcatgtactccacactctttgtctttatcacacga 415
>emb|BX830132.1|CNS0A181 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1101 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcacacga 570 |||||||||||||||||||| ||||| ||||||||| Sbjct: 619 ggcatgtactccacactctttgtctttatcacacga 584
>gb|AY087836.1| Arabidopsis thaliana clone 38843 mRNA, complete sequence Length = 1269 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcacacga 570 |||||||||||||||||||| ||||| ||||||||| Sbjct: 638 ggcatgtactccacactctttgtctttatcacacga 603
>gb|AY086230.1| Arabidopsis thaliana clone 22745 mRNA, complete sequence Length = 937 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 523 gagagggagaaaggcatgtactccacactcttggtcttgatcac 566 ||||| ||||| |||||||||| |||||| |||||||||||||| Sbjct: 596 gagagagagaatggcatgtacttcacacttttggtcttgatcac 553
>dbj|AK118293.1| Arabidopsis thaliana At3g28007 mRNA for unknown protein, complete cds, clone: RAFL19-58-G08 Length = 471 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 523 gagagggagaaaggcatgtactccacactcttggtcttgatcac 566 ||||| ||||| |||||||||| |||||| |||||||||||||| Sbjct: 95 gagagagagaatggcatgtacttcacacttttggtcttgatcac 52
>dbj|AB028616.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMG15 Length = 86139 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 523 gagagggagaaaggcatgtactccacactcttggtcttgatcac 566 ||||| ||||| |||||||||| |||||| |||||||||||||| Sbjct: 9216 gagagagagaatggcatgtacttcacacttttggtcttgatcac 9259
>gb|BT002215.1| Arabidopsis thaliana At3g28008/At3g28008 mRNA, complete cds Length = 756 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 523 gagagggagaaaggcatgtactccacactcttggtcttgatcac 566 ||||| ||||| |||||||||| |||||| |||||||||||||| Sbjct: 509 gagagagagaatggcatgtacttcacacttttggtcttgatcac 466
>dbj|AB011442.1| Triticum aestivum WESR1 mRNA, partial sequence Length = 543 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||||||||||||| ||||||| Sbjct: 171 ggcatgtactccacactcttggtcctgatcac 140
>emb|BX822431.1|CNS0A77F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB37ZH08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 946 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 529 gagaaaggcatgtactccacactcttggtcttgatcac 566 ||||| |||||||||| |||||| |||||||||||||| Sbjct: 551 gagaatggcatgtacttcacacttttggtcttgatcac 514
>gb|BT013320.1| Lycopersicon esculentum clone 135010F, mRNA sequence Length = 1428 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgat 563 |||||||| |||||||||||||||||||| Sbjct: 662 ggcatgtattccacactcttggtcttgat 634
>gb|AY105503.1| Zea mays PCO075069 mRNA sequence Length = 549 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcacacgac 571 ||||||||||| || ||||||||||||||||| |||| Sbjct: 307 ggcatgtactcaacgctcttggtcttgatcactcgac 271
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| ||||||||||| Sbjct: 42123 ggcatgtactccacgctcttcgtcttgatcac 42092
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| ||||||||||| Sbjct: 20728899 ggcatgtactccacgctcttcgtcttgatcac 20728868
>gb|AC115109.2| Homo sapiens BAC clone RP11-78I10 from 2, complete sequence Length = 59356 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 504 gctgagggtgagcgtgagggagagggag 531 |||||||||||| ||||||||||||||| Sbjct: 45724 gctgagggtgagggtgagggagagggag 45751
>dbj|AK063475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B01, full insert sequence Length = 1211 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| ||||||||||| Sbjct: 715 ggcatgtactccacgctcttcgtcttgatcac 684
>gb|AY108458.1| Zea mays PCO137991 mRNA sequence Length = 991 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 465 gtccttgatgagcaggccgtagaggaaccagacgatggcgctgagggtgagcgtgaggga 524 ||||||| ||| ||||||||| ||||||| ||| ||||||||| ||||| || ||| Sbjct: 233 gtccttggtgaagaggccgtagcagaaccaggcgacggcgctgagcgtgaggcagaagga 174 Query: 525 gagggagaaaggcatgtactccacactcttggtcttgatcacacgaccgatgatgctgag 584 |||| || |||| | |||| || ||||||||||||| ||| ||||||||||||| Sbjct: 173 gaggctgatgggcaggaactcgacgctcttggtcttgaccaccttgacgatgatgctgag 114 Query: 585 aggcgcgacgaa 596 ||||||||||| Sbjct: 113 cggcgcgacgaa 102
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 292 ccttgccgacgttgatcacgacgacgtggtc 322 ||||| || |||||||||||||||||||||| Sbjct: 3505081 ccttgtcggcgttgatcacgacgacgtggtc 3505111
>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050D18, complete sequence Length = 126350 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 522 ggagagggagaaaggcatgtactccac 548 |||||||||||| |||||||||||||| Sbjct: 59637 ggagagggagaagggcatgtactccac 59611
>emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chromosome 9, complete sequence Length = 218753 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 506 tgagggtgagcgtgagggagagggaga 532 |||||||||| |||||||||||||||| Sbjct: 141565 tgagggtgagggtgagggagagggaga 141591
>gb|AC123819.2| Mus musculus BAC clone RP23-460M11 from chromosome 8, complete sequence Length = 202899 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 519 gagggagagggagaaaggcatg 540 |||||||||||||||||||||| Sbjct: 176738 gagggagagggagaaaggcatg 176717
>gb|AC122839.4| Mus musculus BAC clone RP23-193K9 from 8, complete sequence Length = 177322 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 519 gagggagagggagaaaggcatg 540 |||||||||||||||||||||| Sbjct: 11191 gagggagagggagaaaggcatg 11170
>gb|AC162909.2| Mus musculus BAC clone RP24-308O19 from chromosome 17, complete sequence Length = 145512 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 507 gagggtgagcgtgagggagagggagaaagg 536 ||||||||| | |||||||||||||||||| Sbjct: 72898 gagggtgagggagagggagagggagaaagg 72927
>emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chromosome 10 Contains the 5' end of a novel gene, a novel gene (MGC35285) and a CpG island, complete sequence Length = 97407 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 334 ccttccatgcctctttcccctccttg 359 |||||||| ||||||||||||||||| Sbjct: 44275 ccttccatacctctttcccctccttg 44250
>emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chromosome 10 Contains gene DKFZP566K0524, the gene for a novel protein similar to tyrosine phosphatase (MGC35285), the 3' end of a KIAA0187 pseudogene, the 3' end of a novel gene, the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2) and a CpG island, complete sequence Length = 171930 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 334 ccttccatgcctctttcccctccttg 359 |||||||| ||||||||||||||||| Sbjct: 63794 ccttccatacctctttcccctccttg 63769
>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence Length = 154259 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 334 ccttccatgcctctttcccctccttg 359 |||||||| ||||||||||||||||| Sbjct: 97949 ccttccatacctctttcccctccttg 97974
>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence Length = 186308 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 334 ccttccatgcctctttcccctccttg 359 |||||||| ||||||||||||||||| Sbjct: 61153 ccttccatacctctttcccctccttg 61128
>ref|NM_101374.2| Arabidopsis thaliana unknown protein AT1G15040 transcript variant AT1G15040.2 mRNA, complete cds Length = 1753 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 gtttgttttacatacatacag 27 ||||||||||||||||||||| Sbjct: 992 gtttgttttacatacatacag 1012
>ref|NM_192689.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 780 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||||| ||||| Sbjct: 502 agaacggcatgtactccacgctcttcgtctttatcac 466
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aatattatttttcttggaaaa 78 ||||||||||||||||||||| Sbjct: 37263 aatattatttttcttggaaaa 37243
>gb|AC153572.13| Mus musculus 10 BAC RP23-187O15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210950 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 507 gagggtgagcgtgagggagagggagaaag 535 ||||||||| | ||||||||||||||||| Sbjct: 14391 gagggtgagggagagggagagggagaaag 14363
>emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on chromosome 6, complete sequence Length = 113362 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 tagtttgttttacatacatacagta 29 |||||||||||||||| |||||||| Sbjct: 402 tagtttgttttacataaatacagta 378
>emb|AL590673.6| Human DNA sequence from clone RP11-202K9 on chromosome 6, complete sequence Length = 123236 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 tagtttgttttacatacatacagta 29 |||||||||||||||| |||||||| Sbjct: 121638 tagtttgttttacataaatacagta 121614
>gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201815 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 507 gagggtgagcgtgagggagagggagaaag 535 ||||||||| | ||||||||||||||||| Sbjct: 67430 gagggtgagggagagggagagggagaaag 67458
>gb|AF332456.1| Arabidopsis thaliana clone C00162 (e) unknown protein (At1g15045) mRNA, complete cds Length = 1002 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 gtttgttttacatacatacag 27 ||||||||||||||||||||| Sbjct: 933 gtttgttttacatacatacag 953
>gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome 10, complete sequence Length = 203324 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 519 gagggagagggagaaaggcat 539 ||||||||||||||||||||| Sbjct: 164497 gagggagagggagaaaggcat 164517
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||||| ||||| Sbjct: 23876079 agaacggcatgtactccacgctcttcgtctttatcac 23876043 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||| ||||||| Sbjct: 19957439 agaagggcatgtactccacgctcttcgtcctgatcac 19957403 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| ||||||| ||||| ||||||||||| Sbjct: 38249738 ggcatgaactccacgctcttcgtcttgatcac 38249707
>emb|BX817147.1|CNS0AD8C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1446 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 gtttgttttacatacatacag 27 ||||||||||||||||||||| Sbjct: 988 gtttgttttacatacatacag 1008
>gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D22 sequence, complete sequence Length = 23652 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 gtttgttttacatacatacag 27 ||||||||||||||||||||| Sbjct: 19365 gtttgttttacatacatacag 19345
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||| ||||||| Sbjct: 60348 agaagggcatgtactccacgctcttcgtcctgatcac 60312
>ref|NM_214275.1| Sus scrofa formiminotransferase-cyclodeaminase (FTCD), mRNA Length = 1843 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 agcccgcccccggggccgccg 213 ||||||||||||||||||||| Sbjct: 1099 agcccgcccccggggccgccg 1079
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||||| ||||| Sbjct: 22483 agaacggcatgtactccacgctcttcgtctttatcac 22447
>dbj|AK104255.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D11, full insert sequence Length = 1168 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||| ||||||| Sbjct: 690 agaagggcatgtactccacgctcttcgtcctgatcac 654
>dbj|AK104143.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G10, full insert sequence Length = 1096 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||| ||||||| Sbjct: 694 agaagggcatgtactccacgctcttcgtcctgatcac 658
>dbj|AK066226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057K13, full insert sequence Length = 1213 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 530 agaaaggcatgtactccacactcttggtcttgatcac 566 |||| |||||||||||||| ||||| ||| ||||||| Sbjct: 695 agaagggcatgtactccacgctcttcgtcctgatcac 659
>gb|L16507.1|PIGFORM Sus scrofa formiminotransferase-cyclodeaminase mRNA, complete cds Length = 1843 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 agcccgcccccggggccgccg 213 ||||||||||||||||||||| Sbjct: 1099 agcccgcccccggggccgccg 1079
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ctcggtgaccgggcgcacctcggc 274 |||| ||||||||||||||||||| Sbjct: 976390 ctcgatgaccgggcgcacctcggc 976367
>ref|NM_122271.2| Arabidopsis thaliana MTN3 AT5G23660 (MTN3) mRNA, complete cds Length = 1272 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 ||||||||||||||||| || ||||| ||||| Sbjct: 629 ggcatgtactccacacttttcgtctttatcac 598
>ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1500 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| |||| || ||||||||||||||||| Sbjct: 677 ggcatgaactcgacgctcttggtcttgatcac 646
>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA Length = 1517 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| |||| || ||||||||||||||||| Sbjct: 678 ggcatgaactcgacgctcttggtcttgatcac 647
>ref|XM_465111.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcac 676
>ref|XM_507468.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1383 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcac 676
>ref|XM_507467.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1384 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 708 ggcatgtactccacgctcttagtctggatcac 677
>ref|XM_506777.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1485 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 704 ggcatgtactccacgctcttagtctggatcac 673
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 cggcgtcgcgttcatgtaga 397 |||||||||||||||||||| Sbjct: 2170327 cggcgtcgcgttcatgtaga 2170308
>ref|NM_190168.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| ||||||| ||||| ||||||||||| Sbjct: 488 ggcatgaactccacgctcttcgtcttgatcac 457
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 cggcgtcgcgttcatgtaga 397 |||||||||||||||||||| Sbjct: 2300040 cggcgtcgcgttcatgtaga 2300059
>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence Length = 274518 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 510 ggtgagcgtgagggagagggagaa 533 |||||| ||||||||||||||||| Sbjct: 117702 ggtgagggtgagggagagggagaa 117679
>gb|AC161169.10| Mus musculus chromosome 5, clone RP24-102B13, complete sequence Length = 239061 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 gagggagagggagaaaggca 538 |||||||||||||||||||| Sbjct: 204634 gagggagagggagaaaggca 204615
>gb|BC044759.2| Mus musculus progesterone receptor membrane component 2, mRNA (cDNA clone IMAGE:5061936), partial cds Length = 2951 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 1580 atttttcttggaaaagaaaa 1561
>ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor membrane component 2 (Pgrmc2), mRNA Length = 3017 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 1649 atttttcttggaaaagaaaa 1630
>ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor membrane component 2, transcript variant 1 (Pgrmc2), mRNA Length = 3017 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 1649 atttttcttggaaaagaaaa 1630
>ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor membrane component 2, transcript variant 3 (Pgrmc2), mRNA Length = 3017 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 1649 atttttcttggaaaagaaaa 1630
>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence Length = 187246 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 510 ggtgagcgtgagggagagggagaa 533 |||||| ||||||||||||||||| Sbjct: 127007 ggtgagggtgagggagagggagaa 126984
>gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome 3, complete sequence Length = 195851 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gtgagggagagggagaaagg 536 |||||||||||||||||||| Sbjct: 3393 gtgagggagagggagaaagg 3412
>gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosome 9, complete sequence Length = 187995 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 gagggagagggagaaaggca 538 |||||||||||||||||||| Sbjct: 70948 gagggagagggagaaaggca 70929
>gb|AC108946.4| Mus musculus BAC clone RP23-134N13 from 3, complete sequence Length = 183446 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gtgagggagagggagaaagg 536 |||||||||||||||||||| Sbjct: 154149 gtgagggagagggagaaagg 154168
>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence Length = 141509 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ctcatgcatgagccatgcat 134 |||||||||||||||||||| Sbjct: 65253 ctcatgcatgagccatgcat 65234
>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence Length = 200790 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 40220 atttttcttggaaaagaaaa 40239
>gb|AC117573.9| Mus musculus chromosome 3, clone RP23-30D1, complete sequence Length = 239439 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tttgttttacatacatacag 27 |||||||||||||||||||| Sbjct: 216401 tttgttttacatacatacag 216382
>gb|AC166575.1| Mus musculus BAC clone RP23-99E16 from chromosome 17, complete sequence Length = 200353 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gtgagggagagggagaaagg 536 |||||||||||||||||||| Sbjct: 135270 gtgagggagagggagaaagg 135289
>emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on chromosome 1 Contains the 3' end of a pseudogene similar to Mus musculus protein tyrosine phosphatase receptor type V Ptprv, the LGR6 gene for leucine-rich repeat-containing G protein-coupled receptor 6, the gene for a ubiquitin conjugating enzyme, the 5' end of the PPP1R12B gene for protein phosphatase 1 regulatory (inhibitor) subunit 12B and four CpG islands, complete sequence Length = 177344 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cccgcccccggggccgccgc 214 |||||||||||||||||||| Sbjct: 31515 cccgcccccggggccgccgc 31534
>gb|AC116459.8| Mus musculus, clone RP23-35F4, complete sequence Length = 215030 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tttgttttacatacatacag 27 |||||||||||||||||||| Sbjct: 25848 tttgttttacatacatacag 25829
>gb|AF542968.1| Triticum aestivum myo-inositol 1-phosphate synthase-like mRNA, partial sequence Length = 819 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ttgatcacgacgacgtggtc 322 |||||||||||||||||||| Sbjct: 377 ttgatcacgacgacgtggtc 358
>emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23 on chromosome Xq21.21-22.1, complete sequence Length = 122777 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gaatattatttttcttggaa 76 |||||||||||||||||||| Sbjct: 58941 gaatattatttttcttggaa 58922
>gb|BT009043.1| Triticum aestivum clone wdk5c.pk006.i16:fis, full insert mRNA sequence Length = 790 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ttgatcacgacgacgtggtc 322 |||||||||||||||||||| Sbjct: 54 ttgatcacgacgacgtggtc 35
>ref|XM_778876.1| PREDICTED: Strongylocentrotus purpuratus similar to Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein convertase PC5) (Subtilisin/kexin-like protease PC5) (PC6) (Subtilisin-like proprotein convertase 6) (SPC6) (LOC578721), mRNA Length = 4011 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 451 agcgcgacgtatttgtccttgatg 474 |||||||| ||||||||||||||| Sbjct: 3860 agcgcgacatatttgtccttgatg 3837
>gb|AY116672.1| Arabidopsis thaliana putative MtN3 protein (At5g23660) mRNA, complete cds Length = 1124 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 ||||||||||||||||| || ||||| ||||| Sbjct: 626 ggcatgtactccacacttttcgtctttatcac 595
>gb|AY059108.1| Arabidopsis thaliana putative MtN3 protein (At5g23660) mRNA, complete cds Length = 889 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 ||||||||||||||||| || ||||| ||||| Sbjct: 500 ggcatgtactccacacttttcgtctttatcac 469
>gb|AY057575.1| Arabidopsis thaliana putative MtN3 protein (At5g23660) mRNA, complete cds Length = 1279 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 ||||||||||||||||| || ||||| ||||| Sbjct: 629 ggcatgtactccacacttttcgtctttatcac 598
>gb|AC166172.1| Mus musculus BAC clone RP23-106N22 from chromosome 17, complete sequence Length = 213656 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gtgagggagagggagaaagg 536 |||||||||||||||||||| Sbjct: 75117 gtgagggagagggagaaagg 75136
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 cggcgtcgcgttcatgtaga 397 |||||||||||||||||||| Sbjct: 461518 cggcgtcgcgttcatgtaga 461537
>dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230117D02 product:progesterone receptor membrane component 2, full insert sequence Length = 2972 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 1619 atttttcttggaaaagaaaa 1600
>dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched library, clone:G430007N18 product:progesterone receptor membrane component 2, full insert sequence Length = 1019 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 822 atttttcttggaaaagaaaa 803
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 cggcgtcgcgttcatgtaga 397 |||||||||||||||||||| Sbjct: 1527026 cggcgtcgcgttcatgtaga 1527007
>dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631434O19 product:MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR COMPONENT 2 (PROGESTERONE MEMBRANE BINDING PROTEIN) (STEROID RECEPTOR PROTEIN DG6) homolog [Homo sapiens], full insert sequence Length = 2558 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atttttcttggaaaagaaaa 83 |||||||||||||||||||| Sbjct: 1538 atttttcttggaaaagaaaa 1519
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| |||| || ||||||||||||||||| Sbjct: 26719641 ggcatgaactcgacgctcttggtcttgatcac 26719672
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 11593470 ggcatgtactccacgctcttagtctggatcac 11593501
>emb|BX832292.1|CNS0A172 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH63ZG08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1121 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 ||||||||||||||||| || ||||| ||||| Sbjct: 601 ggcatgtactccacacttttcgtctttatcac 570
>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence Length = 183088 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ttttcttggaaaagaaaaac 85 |||||||||||||||||||| Sbjct: 27202 ttttcttggaaaagaaaaac 27183
>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete sequence Length = 168606 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 atattatttttcttggaaaagaaa 82 |||||||||||||| ||||||||| Sbjct: 164789 atattatttttctttgaaaagaaa 164812
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| ||||||| ||||| ||||||||||| Sbjct: 168972 ggcatgaactccacgctcttcgtcttgatcac 168941
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| ||||||| ||||| ||||||||||| Sbjct: 10563 ggcatgaactccacgctcttcgtcttgatcac 10532
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| |||| || ||||||||||||||||| Sbjct: 131168 ggcatgaactcgacgctcttggtcttgatcac 131199
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gggcaaagcccgcccccggggccg 210 ||||||||||||||||||| |||| Sbjct: 2551700 gggcaaagcccgcccccggcgccg 2551677
>emb|BX842238.2| Mouse DNA sequence from clone RP24-159M2 on chromosome 2, complete sequence Length = 86221 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 catgcctctttcccctcctt 358 |||||||||||||||||||| Sbjct: 77280 catgcctctttcccctcctt 77261
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 39759 ggcatgtactccacgctcttagtctggatcac 39790
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| |||| || ||||||||||||||||| Sbjct: 62983 ggcatgaactcgacgctcttggtcttgatcac 63014
>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1 Length = 81365 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 ||||||||||||||||| || ||||| ||||| Sbjct: 51874 ggcatgtactccacacttttcgtctttatcac 51905
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| |||| || ||||||||||||||||| Sbjct: 677 ggcatgaactcgacgctcttggtcttgatcac 646
>dbj|AK104467.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C10, full insert sequence Length = 1383 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcac 676
>dbj|AK104411.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G12, full insert sequence Length = 1377 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 707 ggcatgtactccacgctcttagtctggatcac 676
>dbj|AK100174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027A16, full insert sequence Length = 1484 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 703 ggcatgtactccacgctcttagtctggatcac 672
>dbj|AK099531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031J21, full insert sequence Length = 1161 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| ||||||| ||||| ||||||||||| Sbjct: 632 ggcatgaactccacgctcttcgtcttgatcac 601
>dbj|AK071676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108F17, full insert sequence Length = 1384 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||||||||||| ||||| |||| |||||| Sbjct: 708 ggcatgtactccacgctcttagtctggatcac 677
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| |||| || ||||||||||||||||| Sbjct: 678 ggcatgaactcgacgctcttggtcttgatcac 647
>dbj|AK067960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123F10, full insert sequence Length = 1208 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| ||||||| ||||| ||||||||||| Sbjct: 640 ggcatgaactccacgctcttcgtcttgatcac 609
>gb|AY106071.1| Zea mays PCO141993 mRNA sequence Length = 1300 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 |||||| ||||||| ||||| ||||||||||| Sbjct: 732 ggcatgaactccacgctcttcgtcttgatcac 701
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 gtgagggagagggagaaagg 536 |||||||||||||||||||| Sbjct: 114057 gtgagggagagggagaaagg 114038
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 gtgagggagagggagaaagg 536 |||||||||||||||||||| Sbjct: 191415 gtgagggagagggagaaagg 191396
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 cggcgtcgcgttcatgtaga 397 |||||||||||||||||||| Sbjct: 2522300 cggcgtcgcgttcatgtaga 2522281
>gb|AF095641.1|AF095641 Arabidopsis thaliana MTN3 homolog (MTN3) mRNA, complete cds Length = 1209 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 ggcatgtactccacactcttggtcttgatcac 566 ||||||||||||||||| || ||||| ||||| Sbjct: 604 ggcatgtactccacacttttcgtctttatcac 573
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 agctcttgtcggccttgccg 299 |||||||||||||||||||| Sbjct: 2085171 agctcttgtcggccttgccg 2085152
>gb|AF056325.1|AF056325 Hordeum vulgare myo-inositol 1-phosphate synthase mRNA, complete cds Length = 2152 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ttgatcacgacgacgtggtc 322 |||||||||||||||||||| Sbjct: 1302 ttgatcacgacgacgtggtc 1283
>gb|AC157945.2| Mus musculus BAC clone RP23-289C11 from chromosome 9, complete sequence Length = 216396 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 gagggagagggagaaaggca 538 |||||||||||||||||||| Sbjct: 183008 gagggagagggagaaaggca 182989
>emb|AL844565.2| Mouse DNA sequence from clone RP23-427L11 on chromosome 2, complete sequence Length = 95786 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 tgagggagagggagaaaggc 537 |||||||||||||||||||| Sbjct: 43235 tgagggagagggagaaaggc 43216 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,561,940 Number of Sequences: 3902068 Number of extensions: 5561940 Number of successful extensions: 194898 Number of sequences better than 10.0: 137 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 193466 Number of HSP's gapped (non-prelim): 1431 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
