>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Arabidopsis|
           protein 1) (RAP-1) (Basic helix-loop-helix protein 6)
           (bHLH6) (AtbHLH006) (rd22BP1)
          Length = 623

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
 Frame = -3

Query: 657 FYALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETE-----------------RER 529
           FYALRAVVPN+SKMDKAS LGDAIAYI +L+ K+   E+E                 R+ 
Sbjct: 468 FYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKA 527

Query: 528 FLESGMVDPRERHPRP---EVDIQVVQDEVLVRVMSPLENHPVKKVFEAFEEADVRVGES 358
               G +       +P   E++++++  + ++RV S   NHP  ++  A  + ++ V  +
Sbjct: 528 SASGGDMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHA 587

Query: 357 KLTGNNGTVVHSFIIKCPGSEQQTREKVIAAM 262
            ++  N  ++    +K  G    T+E++ A++
Sbjct: 588 SMSVVNDLMIQQATVKM-GFRIYTQEQLRASL 618

>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop-helix|
           protein 42) (bHLH42) (AtbHLH042)
          Length = 518

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
 Frame = -3

Query: 657 FYALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDME-TERERFLESGMVDPRERHPRP 481
           F  LR++VP ++KMDK S LGD IAY+  L+K++ ++E T  E+  +       +R    
Sbjct: 379 FITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQ--QHKRTRTCKRKTSE 436

Query: 480 EVDIQVVQDEVLVRVMSPLENHPVKKVFEAFEEADVRVGESKLTGNNGTVVHSFIIKCPG 301
           EV++ +++++VL+ +     +  +  + +   E  +       + N+    H F      
Sbjct: 437 EVEVSIIENDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTSVND----HDF------ 486

Query: 300 SEQQTREKV------IAAMSRAMSSV 241
            E + R KV      IA + RA+  V
Sbjct: 487 -EAEIRAKVRGKKASIAEVKRAIHQV 511

>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF expression 1)|
           (Basic helix-loop-helix protein 116) (bHLH116)
           (AtbHLH116)
          Length = 494

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = -3

Query: 654 YALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETERE 532
           Y LR+VVP ISKMD+AS LGDAI Y+ +L +++ D+  E E
Sbjct: 324 YMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELE 364

>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3) (Basic|
           helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
           (AtMyc-146)
          Length = 596

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 21/42 (50%), Positives = 33/42 (78%)
 Frame = -3

Query: 657 FYALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETERE 532
           F  LR+++P+ISK+DK S L D I Y+ DLQK+++++E+ RE
Sbjct: 421 FMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELESCRE 462

>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein|
          Length = 610

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 34/42 (80%)
 Frame = -3

Query: 657 FYALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETERE 532
           F  L++++P+I +++KAS L + IAY+ +LQ++++++E+ RE
Sbjct: 432 FLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELESSRE 473

>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein|
          Length = 612

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 34/42 (80%)
 Frame = -3

Query: 657 FYALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETERE 532
           F  L++++P+I +++KAS L + IAY+ +LQ++++++E+ RE
Sbjct: 434 FLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELESSRE 475

>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated|
           protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
           (AtbHLH008)
          Length = 524

 Score = 37.4 bits (85), Expect = 0.042
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = -3

Query: 651 ALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETERERFLESGMVDP 502
           AL+ ++PN +K+DKAS L +AI Y+  LQ +++ M      +L   ++ P
Sbjct: 365 ALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFP 414

>SPT_ARATH (Q9FUA4) Protein SPATULA|
          Length = 373

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 15/33 (45%), Positives = 25/33 (75%)
 Frame = -3

Query: 651 ALRAVVPNISKMDKASXLGDAIAYITDLQKKLK 553
           AL++++PN +K DKAS L +AI Y+  LQ +++
Sbjct: 219 ALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 251

>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)|
          Length = 1094

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -3

Query: 594 DAIAYITDLQKKL----KDMETERERFLESGMVDPRERHPRPE 478
           D++A I +L+K+L    K++ET RERF ES  +    R P PE
Sbjct: 420 DSMAKIAELEKQLSQARKELETLRERFSESTPMGTSRRIPEPE 462

>SELU_ECOL6 (Q8FK67) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 361

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 239 YTELMARDIAAITFSLVCCSEPGHLMMKECTTVPLLPVSFDSPTRTSASSNASKTFFTG- 415
           Y EL AR  AA+T  L   S  GHL       VPLL   +D   R      A K  F G 
Sbjct: 298 YNELAARLDAALTTQLTTGSTDGHL----AWLVPLLEEYYDPMYRYQLEKKAEKVVFRGE 353

Query: 416 WFSNG 430
           W  +G
Sbjct: 354 WAGSG 358

>FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) (Leukocyte|
           formin) (CLL-associated antigen KW-13)
          Length = 1100

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -3

Query: 594 DAIAYITDLQKKL----KDMETERERFLESGMVDPRERHPRPE 478
           +++A I +L+K+L    K++ET RERF ES  +    R P PE
Sbjct: 421 ESMAKIAELEKQLSQARKELETLRERFSESTAMGASRRPPEPE 463

>SELU_ECOLI (P33667) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 364

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/59 (38%), Positives = 25/59 (42%)
 Frame = +2

Query: 239 YTELMARDIAAITFSLVCCSEPGHLMMKECTTVPLLPVSFDSPTRTSASSNASKTFFTG 415
           Y EL AR  AA+T  L   S  GHL       VPLL   +D   R      A K  F G
Sbjct: 298 YNELAARLDAALTTQLTTGSTDGHL----AWLVPLLEEYYDPMYRYQLEKKAEKVVFRG 352

>SELU_ECO57 (Q8XCZ2) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 364

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/59 (38%), Positives = 25/59 (42%)
 Frame = +2

Query: 239 YTELMARDIAAITFSLVCCSEPGHLMMKECTTVPLLPVSFDSPTRTSASSNASKTFFTG 415
           Y EL AR  AA+T  L   S  GHL       VPLL   +D   R      A K  F G
Sbjct: 298 YNELAARLDAALTTQLTTGSTDGHL----AWLVPLLEEYYDPMYRYQLEKKAEKVVFRG 352

>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 943

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 465 PGCQPLV*GVAPLDPPYQTQEIVLSPSP 548
           P C P+  G++PL  PY +Q++ + P P
Sbjct: 713 PTCGPVSQGLSPLPRPYYSQQLAMPPDP 740

>MFP1_LYCES (P93203) MAR binding filament-like protein 1|
          Length = 697

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
 Frame = -3

Query: 675 RSSTSGFYALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETERERFLESGMVDPRE 496
           RS+TS      + V ++S M + S   D +  +T   K+LKD   +RER LE   V    
Sbjct: 267 RSNTSKLAEKESEVNSLSDMYQQSQ--DQLMNLTSEIKELKDEIQKRERELELKCVS--- 321

Query: 495 RHPRPEVDIQVVQDEVLVRVMSPLENHPVKKVFEAFE-EADVRVGESKLTGNNGTVVHSF 319
                 +++Q +   +L R  S  E H ++K +  F+  +D +V      G     +H  
Sbjct: 322 ---EDNLNVQ-LNSLLLERDESKKELHAIQKEYSEFKSNSDEKVASDATLGEQEKRLHQL 377

Query: 318 --IIKCPGSEQQTREKVIAAMSR 256
              +    SE    E +IA ++R
Sbjct: 378 EEQLGTALSEASKNEVLIADLTR 400

>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 32)
            (Ubiquitin-specific-processing protease 32)
            (Deubiquitinating enzyme 32) (NY-REN-60 antigen)
          Length = 1604

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 335  VPLLPVSFDSPTRTSASSNASKTFFTGWFSNGDITR 442
            VP+ P+S  SPT+T  SS+ S        +NGD+ R
Sbjct: 999  VPVSPISASSPTQTDFSSSPSTNEMFTLTTNGDLPR 1034

>GLTA_BACSU (P39812) Glutamate synthase [NADPH] large chain (EC 1.4.1.13)|
           (NADPH-GOGAT)
          Length = 1520

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 669 STSGFYALRAVVPNISKMDKASXLGDAIAYITDLQKKLKDMETERERFLESGM 511
           S   FYAL+ +V    K  K   L     +  DL++ LKDM T+ E+ +  G+
Sbjct: 565 SNEQFYALKTIVHPDLKSQKIDVL-----FSEDLERGLKDMFTQAEKAISQGV 612

>RBN_YERPS (Q66GF5) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)|
          Length = 294

 Score = 25.0 bits (53), Expect(2) = 7.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 228 STDSTLSS-WRETLQRSLFPSFAV 296
           S DS L+  WR  +QRSL  SFAV
Sbjct: 119 SVDSVLNIIWRSKIQRSLVFSFAV 142



 Score = 23.5 bits (49), Expect(2) = 7.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 394 FKDLLYWMVLQWRHNSNKNLVLHHLDVNLWSRVSLPWIHHTRLKKSFSLRLHIFELLL 567
           F   +YWMVL         LV   + ++ +  +SL W+ H R+       L +F LL+
Sbjct: 138 FSFAVYWMVL----TLGPILVGASMVISSYL-LSLHWLAHARVDSMIDEILRVFPLLI 190

>RBN_YERPE (Q8ZJR1) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)|
          Length = 294

 Score = 25.0 bits (53), Expect(2) = 7.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 228 STDSTLSS-WRETLQRSLFPSFAV 296
           S DS L+  WR  +QRSL  SFAV
Sbjct: 119 SVDSVLNIIWRSKIQRSLVFSFAV 142



 Score = 23.5 bits (49), Expect(2) = 7.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 394 FKDLLYWMVLQWRHNSNKNLVLHHLDVNLWSRVSLPWIHHTRLKKSFSLRLHIFELLL 567
           F   +YWMVL         LV   + ++ +  +SL W+ H R+       L +F LL+
Sbjct: 138 FSFAVYWMVL----TLGPILVGASMVISSYL-LSLHWLAHARVDSMIDEILRVFPLLI 190

>PALC_CRYNE (Q5KGJ9) pH-response regulator protein palC|
          Length = 488

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 612 KASXLGDAIAYITDLQKKLKDMETERERFLESGMVDPRERHPRPE 478
           K + +G+A+A++ D Q +L+D+E  + R    G+   + R  + E
Sbjct: 348 KGAKVGEALAWVKDAQGRLEDLEDSKMRAKLKGLSIGKSRERKKE 392

>SNX23_HUMAN (Q96L93) Kinesin-like motor protein C20orf23 (Sorting nexin 23)|
          Length = 1317

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = -3

Query: 570 LQKKLKDMETERERFLESGMVDPRE---RHPRPEVDIQVVQDEVLVRVMSPLENHPVKKV 400
           ++ KLKD+  E+E+F E  + + +E   +  R E +  +   E L R +  L N+   + 
Sbjct: 665 IENKLKDLLAEKEKFEEERLREQQEIELQKKRQEEETFLRVQEELQR-LKELNNNEKAEK 723

Query: 399 FEAFEEAD 376
           F+ F+E D
Sbjct: 724 FQIFQELD 731


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,130,223
Number of Sequences: 219361
Number of extensions: 2125550
Number of successful extensions: 6496
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6493
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)