Clone Name | rbasd17g05 |
---|---|
Clone Library Name | barley_pub |
>gb|AY625684.1| Triticum aestivum bHLH transcription factor (bHLH94) mRNA, partial cds Length = 878 Score = 581 bits (293), Expect = e-162 Identities = 332/344 (96%), Gaps = 1/344 (0%) Strand = Plus / Minus Query: 334 cgttccattgttgcctgtgagttttgactcccctacccggacgtccgcctcttcaaacgc 393 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 878 cgttccattgttgcctgtgagtttcgactcccctacccggacgtccgcctcttcaaacgc 819 Query: 394 ttcaaagaccttctttactggatggttctccaatggagacataactcgaacaagaacctc 453 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 818 ttcaaagaccttctttaccggatggttctccaatggagacataactcgaaccagaacctc 759 Query: 454 gtcttgcaccacctggatgtcaacctctggtctagggtgtcgctcccttggatccaccat 513 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 758 gtcttgcaccacctggatgtcaacctctggtctaggggctcgctcccttggatccaccat 699 Query: 514 accagactcaagaaatcgttctctctccgtctccatatctttgagcttcttctgaaggtc 573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 698 accagactcaagaaatcgttctctctccgtctccatatctttgagcttcttctgaaggtc 639 Query: 574 agtgatgtatgctatagcatcgcccagcanggaggccttgtccatttttgagatgttggg 633 ||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||| Sbjct: 638 agtgatgtatgctattgcatcgcccagcagggaagccttgtccattttcgagatgttggg 579 Query: 634 cacaacagctctcaacgcgtagaacccgctggttgagcttctcc 677 |||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct: 578 cacaacggctctcaacgcatagaa-ccgctggttgagcttctcc 536
>gb|AY111157.1| Zea mays CL6102_1 mRNA sequence Length = 745 Score = 303 bits (153), Expect = 4e-79 Identities = 322/378 (85%), Gaps = 3/378 (0%) Strand = Plus / Minus Query: 247 gctcatggcgcgagacattgcagcgatcactttttccctcgtttgctgttcggagccagg 306 |||||| |||||||||||||| || ||||| || |||||||||||||| || | |||||| Sbjct: 382 gctcatcgcgcgagacattgccgctatcaccttctccctcgtttgctgctcagtgccagg 323 Query: 307 gcacttgatgatgaaggaatgcactaccgttccattgtt---gcctgtgagttttgactc 363 |||||||||||||| |||||||| |||| || ||||| || || | |||||||| Sbjct: 322 acacttgatgatgaaagaatgcaccgccgtcccgttgttattgctcgtcacctttgactc 263 Query: 364 ccctacccggacgtccgcctcttcaaacgcttcaaagaccttctttactggatggttctc 423 ||||| ||||| || |||||||| ||||||| ||||||||||| |||||||||||||| Sbjct: 262 gcctacacggacctctgcctcttcgaacgcttggaagaccttcttgactggatggttctc 203 Query: 424 caatggagacataactcgaacaagaacctcgtcttgcaccacctggatgtcaacctctgg 483 || ||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 202 cattggagacatcacacgaacaagaacctcgtcctgcaccacctggatgtccacctctgg 143 Query: 484 tctagggtgtcgctcccttggatccaccataccagactcaagaaatcgttctctctccgt 543 ||||| ||||||||||| ||||||||||| ||||| | | | ||| |||||||| Sbjct: 142 cctaggcgcccgctcccttgggtccaccatacccgactccaacagcctttccctctccgt 83 Query: 544 ctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccagcan 603 |||||| ||||||||||||||||| |||||||||||||| | ||| ||||||||||||| Sbjct: 82 ctccatctctttgagcttcttctggaggtcagtgatgtacgttatcgcatcgcccagcag 23 Query: 604 ggaggccttgtccatttt 621 ||| |||||||||||||| Sbjct: 22 ggacgccttgtccatttt 5
>gb|AY109226.1| Zea mays PCO075741 mRNA sequence Length = 705 Score = 212 bits (107), Expect = 1e-51 Identities = 306/373 (82%), Gaps = 6/373 (1%) Strand = Plus / Minus Query: 247 gctcatggcgcgagacattgcagcgatcactttttccctcgtttgctgttcggagccagg 306 |||||| || |||||||| || || ||||| || |||||||||||||| || | ||| || Sbjct: 384 gctcatcgcacgagacatcgccgctatcaccttctccctcgtttgctgctcagtgccggg 325 Query: 307 gcacttgatgatgaaggaatgcactaccgttccattgttg------cctgtgagttttga 360 |||||||||||||| |||||||| || || || |||||| || || | ||||| Sbjct: 324 acacttgatgatgaaagaatgcaccactgtcccgttgttgttgttgcccgtcacctttga 265 Query: 361 ctcccctacccggacgtccgcctcttcaaacgcttcaaagaccttctttactggatggtt 420 ||| || | ||||| || |||||||| ||||||| ||||||||||| ||||||||||| Sbjct: 264 ctcgcccaggcggacttctgcctcttcgaacgcttggaagaccttcttgactggatggtt 205 Query: 421 ctccaatggagacataactcgaacaagaacctcgtcttgcaccacctggatgtcaacctc 480 ||||| ||||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 204 ctccattggagacatcactcgtacaaggacctcgtcctgcaccacctgtatgtccacctc 145 Query: 481 tggtctagggtgtcgctcccttggatccaccataccagactcaagaaatcgttctctctc 540 || ||||| ||||||||||| ||||||||||||||||| || | | ||| ||||| Sbjct: 144 cggcctaggcgcacgctcccttgggtccaccataccagactccaggagcctttccctctc 85 Query: 541 cgtctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccag 600 |||||||| || || ||||||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 84 tgtctccatctccttcagcttcttctggaggtcagtgatgtacgttatcgcatcgcccag 25 Query: 601 canggaggccttg 613 || ||| |||||| Sbjct: 24 cagggacgccttg 12
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 117 bits (59), Expect = 5e-23 Identities = 119/139 (85%) Strand = Plus / Plus Query: 229 caaccgattctacactgagctcatggcgcgagacattgcagcgatcactttttccctcgt 288 |||| |||||||| ||||| |||| |||||||||| || || ||||| || |||||||| Sbjct: 7494477 caactgattctaccctgagttcatcacgcgagacatggcggcaatcaccttctccctcgt 7494536 Query: 289 ttgctgttcggagccagggcacttgatgatgaaggaatgcactaccgttccattgttgcc 348 ||||||||||| ||||||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 7494537 ttgctgttcggcgccagggcacttgatgatgaaagaatgcacggccgtgccgttgttgct 7494596 Query: 349 tgtgagttttgactcccct 367 ||||| || ||||||||| Sbjct: 7494597 tgtgatcttcgactcccct 7494615 Score = 109 bits (55), Expect = 1e-20 Identities = 115/134 (85%), Gaps = 1/134 (0%) Strand = Plus / Plus Query: 544 ctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccagcan 603 |||||| ||||||||||||||||| |||||||||||||||| ||| || || || || | Sbjct: 7494792 ctccatctctttgagcttcttctgtaggtcagtgatgtatgttatggcgtcaccaaggag 7494851 Query: 604 ggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaacccgct 663 ||| ||||||||||||||||| || ||||| ||||| ||||||| || ||||| |||| Sbjct: 7494852 ggatgccttgtccatttttgatatattgggtacaacggctctcagtgcatagaa-tcgct 7494910 Query: 664 ggttgagcttctcc 677 |||||||||||||| Sbjct: 7494911 ggttgagcttctcc 7494924 Score = 48.1 bits (24), Expect = 0.038 Identities = 66/79 (83%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 599 agcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaac 658 |||| ||| ||||||||||| || ||||| |||||||| || || | || ||||||||| Sbjct: 29265798 agcagggacgccttgtccatcttggagatcttgggcaccaccgcgcgcagcgcgtagaa- 29265740 Query: 659 ccgctggttgagcttctcc 677 || |||||| ||||||||| Sbjct: 29265739 cctctggttcagcttctcc 29265721
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 117 bits (59), Expect = 5e-23 Identities = 119/139 (85%) Strand = Plus / Plus Query: 229 caaccgattctacactgagctcatggcgcgagacattgcagcgatcactttttccctcgt 288 |||| |||||||| ||||| |||| |||||||||| || || ||||| || |||||||| Sbjct: 43269 caactgattctaccctgagttcatcacgcgagacatggcggcaatcaccttctccctcgt 43328 Query: 289 ttgctgttcggagccagggcacttgatgatgaaggaatgcactaccgttccattgttgcc 348 ||||||||||| ||||||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 43329 ttgctgttcggcgccagggcacttgatgatgaaagaatgcacggccgtgccgttgttgct 43388 Query: 349 tgtgagttttgactcccct 367 ||||| || ||||||||| Sbjct: 43389 tgtgatcttcgactcccct 43407 Score = 109 bits (55), Expect = 1e-20 Identities = 115/134 (85%), Gaps = 1/134 (0%) Strand = Plus / Plus Query: 544 ctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccagcan 603 |||||| ||||||||||||||||| |||||||||||||||| ||| || || || || | Sbjct: 43584 ctccatctctttgagcttcttctgtaggtcagtgatgtatgttatggcgtcaccaaggag 43643 Query: 604 ggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaacccgct 663 ||| ||||||||||||||||| || ||||| ||||| ||||||| || ||||| |||| Sbjct: 43644 ggatgccttgtccatttttgatatattgggtacaacggctctcagtgcatagaa-tcgct 43702 Query: 664 ggttgagcttctcc 677 |||||||||||||| Sbjct: 43703 ggttgagcttctcc 43716
>dbj|AK121013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047M20, full insert sequence Length = 2356 Score = 117 bits (59), Expect = 5e-23 Identities = 119/139 (85%) Strand = Plus / Minus Query: 229 caaccgattctacactgagctcatggcgcgagacattgcagcgatcactttttccctcgt 288 |||| |||||||| ||||| |||| |||||||||| || || ||||| || |||||||| Sbjct: 2000 caactgattctaccctgagttcatcacgcgagacatggcggcaatcaccttctccctcgt 1941 Query: 289 ttgctgttcggagccagggcacttgatgatgaaggaatgcactaccgttccattgttgcc 348 ||||||||||| ||||||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 1940 ttgctgttcggcgccagggcacttgatgatgaaagaatgcacggccgtgccgttgttgct 1881 Query: 349 tgtgagttttgactcccct 367 ||||| || ||||||||| Sbjct: 1880 tgtgatcttcgactcccct 1862 Score = 109 bits (55), Expect = 1e-20 Identities = 115/134 (85%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 544 ctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccagcan 603 |||||| ||||||||||||||||| |||||||||||||||| ||| || || || || | Sbjct: 1685 ctccatctctttgagcttcttctgtaggtcagtgatgtatgttatggcgtcaccaaggag 1626 Query: 604 ggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaacccgct 663 ||| ||||||||||||||||| || ||||| ||||| ||||||| || ||||| |||| Sbjct: 1625 ggatgccttgtccatttttgatatattgggtacaacggctctcagtgcatagaa-tcgct 1567 Query: 664 ggttgagcttctcc 677 |||||||||||||| Sbjct: 1566 ggttgagcttctcc 1553
>dbj|AK064943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P13, full insert sequence Length = 2529 Score = 117 bits (59), Expect = 5e-23 Identities = 119/139 (85%) Strand = Plus / Minus Query: 229 caaccgattctacactgagctcatggcgcgagacattgcagcgatcactttttccctcgt 288 |||| |||||||| ||||| |||| |||||||||| || || ||||| || |||||||| Sbjct: 2173 caactgattctaccctgagttcatcacgcgagacatggcggcaatcaccttctccctcgt 2114 Query: 289 ttgctgttcggagccagggcacttgatgatgaaggaatgcactaccgttccattgttgcc 348 ||||||||||| ||||||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 2113 ttgctgttcggcgccagggcacttgatgatgaaagaatgcacggccgtgccgttgttgct 2054 Query: 349 tgtgagttttgactcccct 367 ||||| || ||||||||| Sbjct: 2053 tgtgatcttcgactcccct 2035 Score = 109 bits (55), Expect = 1e-20 Identities = 115/134 (85%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 544 ctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccagcan 603 |||||| ||||||||||||||||| |||||||||||||||| ||| || || || || | Sbjct: 1858 ctccatctctttgagcttcttctgtaggtcagtgatgtatgttatggcgtcaccaaggag 1799 Query: 604 ggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaacccgct 663 ||| ||||||||||||||||| || ||||| ||||| ||||||| || ||||| |||| Sbjct: 1798 ggatgccttgtccatttttgatatattgggtacaacggctctcagtgcatagaa-tcgct 1740 Query: 664 ggttgagcttctcc 677 |||||||||||||| Sbjct: 1739 ggttgagcttctcc 1726
>gb|AY625681.1| Oryza sativa (japonica cultivar-group) bHLH transcription factor (bHLH66) gene, partial cds Length = 936 Score = 109 bits (55), Expect = 1e-20 Identities = 115/134 (85%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 544 ctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccagcan 603 |||||| ||||||||||||||||| |||||||||||||||| ||| || || || || | Sbjct: 672 ctccatctctttgagcttcttctgtaggtcagtgatgtatgttatggcgtcaccaaggag 613 Query: 604 ggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaacccgct 663 ||| ||||||||||||||||| || ||||| ||||| ||||||| || ||||| |||| Sbjct: 612 ggatgccttgtccatttttgatatattgggtacaacggctctcagtgcatagaa-tcgct 554 Query: 664 ggttgagcttctcc 677 |||||||||||||| Sbjct: 553 ggttgagcttctcc 540 Score = 93.7 bits (47), Expect = 7e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 281 tccctcgtttgctgttcggagccagggcacttgatgatgaaggaatgcactaccgttcca 340 ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| || Sbjct: 935 tccctcgtttgctgttcggcgccagggcacttgatgatgaaagaatgcacggccgtgccg 876 Query: 341 ttgttgcctgtgagttttgactcccct 367 ||||||| ||||| || ||||||||| Sbjct: 875 ttgttgcttgtgatcttcgactcccct 849
>ref|NM_188664.1| Oryza sativa (japonica cultivar-group), Ozsa8267 predicted mRNA Length = 1821 Score = 109 bits (55), Expect = 1e-20 Identities = 115/134 (85%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 544 ctccatatctttgagcttcttctgaaggtcagtgatgtatgctatagcatcgcccagcan 603 |||||| ||||||||||||||||| |||||||||||||||| ||| || || || || | Sbjct: 1383 ctccatctctttgagcttcttctgtaggtcagtgatgtatgttatggcgtcaccaaggag 1324 Query: 604 ggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaacccgct 663 ||| ||||||||||||||||| || ||||| ||||| ||||||| || ||||| |||| Sbjct: 1323 ggatgccttgtccatttttgatatattgggtacaacggctctcagtgcatagaa-tcgct 1265 Query: 664 ggttgagcttctcc 677 |||||||||||||| Sbjct: 1264 ggttgagcttctcc 1251 Score = 93.7 bits (47), Expect = 7e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 281 tccctcgtttgctgttcggagccagggcacttgatgatgaaggaatgcactaccgttcca 340 ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| || Sbjct: 1646 tccctcgtttgctgttcggcgccagggcacttgatgatgaaagaatgcacggccgtgccg 1587 Query: 341 ttgttgcctgtgagttttgactcccct 367 ||||||| ||||| || ||||||||| Sbjct: 1586 ttgttgcttgtgatcttcgactcccct 1560
>ref|NM_117738.2| Arabidopsis thaliana DNA binding / transcription factor AT4G16430 mRNA, complete cds Length = 1798 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 608 gccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaa 657 ||||||||||| || |||||||| ||||| || |||||||| |||||||| Sbjct: 1273 gccttgtccatcttggagatgttaggcaccaccgctctcaaagcgtagaa 1224
>ref|NM_197868.1| Oryza sativa (japonica cultivar-group) putative MYC transcription factor (OSJNBa0003O19.20), mRNA Length = 2067 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/85 (83%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 593 tcgcccagcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcg 652 |||||||||| || ||||||||||| || || | ||||||||| || || | || |||| Sbjct: 1649 tcgcccagcagcgacgccttgtccatcttggacacgttgggcaccacggcgcgcagcgcg 1590 Query: 653 tagaacccgctggttgagcttctcc 677 ||||| |||||||||||||||||| Sbjct: 1589 tagaa-gcgctggttgagcttctcc 1566
>gb|AY536428.1| Oryza sativa MYC protein mRNA, complete cds Length = 2100 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/85 (83%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 593 tcgcccagcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcg 652 |||||||||| || ||||||||||| || || | ||||||||| || || | || |||| Sbjct: 1682 tcgcccagcagcgacgccttgtccatcttggacacgttgggcaccacggcgcgcagcgcg 1623 Query: 653 tagaacccgctggttgagcttctcc 677 ||||| |||||||||||||||||| Sbjct: 1622 tagaa-gcgctggttgagcttctcc 1599
>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6 Length = 213788 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 608 gccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaa 657 ||||||||||| || |||||||| ||||| || |||||||| |||||||| Sbjct: 33155 gccttgtccatcttggagatgttaggcaccaccgctctcaaagcgtagaa 33106
>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44 Length = 198735 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 608 gccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaa 657 ||||||||||| || |||||||| ||||| || |||||||| |||||||| Sbjct: 11083 gccttgtccatcttggagatgttaggcaccaccgctctcaaagcgtagaa 11034
>gb|AF251688.1|AF251688 Arabidopsis thaliana putative transcription factor BHLH3 (BHLH3) mRNA, complete cds Length = 1404 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 608 gccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaa 657 ||||||||||| || |||||||| ||||| || |||||||| |||||||| Sbjct: 1055 gccttgtccatcttggagatgttaggcaccaccgctctcaaagcgtagaa 1006
>gb|AY057626.1| Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds Length = 1792 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 608 gccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaa 657 ||||||||||| || |||||||| ||||| || |||||||| |||||||| Sbjct: 1273 gccttgtccatcttggagatgttaggcaccaccgctctcaaagcgtagaa 1224
>gb|AF428368.1|AF428368 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds Length = 1788 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 608 gccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaa 657 ||||||||||| || |||||||| ||||| || |||||||| |||||||| Sbjct: 1267 gccttgtccatcttggagatgttaggcaccaccgctctcaaagcgtagaa 1218
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/85 (83%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 593 tcgcccagcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcg 652 |||||||||| || ||||||||||| || || | ||||||||| || || | || |||| Sbjct: 22338980 tcgcccagcagcgacgccttgtccatcttggacacgttgggcaccacggcgcgcagcgcg 22338921 Query: 653 tagaacccgctggttgagcttctcc 677 ||||| |||||||||||||||||| Sbjct: 22338920 tagaa-gcgctggttgagcttctcc 22338897
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/85 (83%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 593 tcgcccagcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcg 652 |||||||||| || ||||||||||| || || | ||||||||| || || | || |||| Sbjct: 156223 tcgcccagcagcgacgccttgtccatcttggacacgttgggcaccacggcgcgcagcgcg 156164 Query: 653 tagaacccgctggttgagcttctcc 677 ||||| |||||||||||||||||| Sbjct: 156163 tagaa-gcgctggttgagcttctcc 156140
>gb|BT002301.1| Arabidopsis thaliana At4g16430/dl4240w mRNA, complete cds Length = 1404 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 608 gccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaa 657 ||||||||||| || |||||||| ||||| || |||||||| |||||||| Sbjct: 1055 gccttgtccatcttggagatgttaggcaccaccgctctcaaagcgtagaa 1006
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/85 (83%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 593 tcgcccagcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcg 652 |||||||||| || ||||||||||| || || | ||||||||| || || | || |||| Sbjct: 22351048 tcgcccagcagcgacgccttgtccatcttggacacgttgggcaccacggcgcgcagcgcg 22350989 Query: 653 tagaacccgctggttgagcttctcc 677 ||||| |||||||||||||||||| Sbjct: 22350988 tagaa-gcgctggttgagcttctcc 22350965
>ref|NM_191645.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2058 Score = 48.1 bits (24), Expect = 0.038 Identities = 66/79 (83%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 599 agcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaac 658 |||| ||| ||||||||||| || ||||| |||||||| || || | || ||||||||| Sbjct: 1085 agcagggacgccttgtccatcttggagatcttgggcaccaccgcgcgcagcgcgtagaa- 1027 Query: 659 ccgctggttgagcttctcc 677 || |||||| ||||||||| Sbjct: 1026 cctctggttcagcttctcc 1008
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 48.1 bits (24), Expect = 0.038 Identities = 66/79 (83%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 599 agcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaac 658 |||| ||| ||||||||||| || ||||| |||||||| || || | || ||||||||| Sbjct: 44661 agcagggacgccttgtccatcttggagatcttgggcaccaccgcgcgcagcgcgtagaa- 44603 Query: 659 ccgctggttgagcttctcc 677 || |||||| ||||||||| Sbjct: 44602 cctctggttcagcttctcc 44584
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 48.1 bits (24), Expect = 0.038 Identities = 66/79 (83%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 599 agcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaac 658 |||| ||| ||||||||||| || ||||| |||||||| || || | || ||||||||| Sbjct: 111585 agcagggacgccttgtccatcttggagatcttgggcaccaccgcgcgcagcgcgtagaa- 111527 Query: 659 ccgctggttgagcttctcc 677 || |||||| ||||||||| Sbjct: 111526 cctctggttcagcttctcc 111508
>dbj|AK064946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P16, full insert sequence Length = 1980 Score = 48.1 bits (24), Expect = 0.038 Identities = 66/79 (83%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 599 agcanggaggccttgtccatttttgagatgttgggcacaacagctctcaacgcgtagaac 658 |||| ||| ||||||||||| || ||||| |||||||| || || | || ||||||||| Sbjct: 1346 agcagggacgccttgtccatcttggagatcttgggcaccaccgcgcgcagcgcgtagaa- 1288 Query: 659 ccgctggttgagcttctcc 677 || |||||| ||||||||| Sbjct: 1287 cctctggttcagcttctcc 1269
>gb|AF295804.1| Danio rerio rho coiled-coil associated kinase alpha mRNA, complete cds Length = 5447 Score = 44.1 bits (22), Expect = 0.59 Identities = 31/34 (91%) Strand = Plus / Minus Query: 537 tctccgtctccatatctttgagcttcttctgaag 570 ||||| ||||||||||| ||||||||| |||||| Sbjct: 2102 tctccttctccatatctgtgagcttctcctgaag 2069
>ref|NM_174863.2| Danio rerio rho-associated, coiled-coil containing protein kinase 2 (rock2), mRNA Length = 5447 Score = 44.1 bits (22), Expect = 0.59 Identities = 31/34 (91%) Strand = Plus / Minus Query: 537 tctccgtctccatatctttgagcttcttctgaag 570 ||||| ||||||||||| ||||||||| |||||| Sbjct: 2102 tctccttctccatatctgtgagcttctcctgaag 2069
>gb|AE010369.1| Methanopyrus kandleri AV19 section 68 of 157 of the complete genome Length = 10175 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 543 tctccatatctttgagcttcttctg 567 ||||| ||||||||||||||||||| Sbjct: 3489 tctccctatctttgagcttcttctg 3465
>gb|AC124987.9| Mus musculus chromosome 3, clone RP24-364E17, complete sequence Length = 165330 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ctgttcggagccagggcactt 312 ||||||||||||||||||||| Sbjct: 41544 ctgttcggagccagggcactt 41564
>ref|XM_847915.1| PREDICTED: Canis familiaris similar to Protein C5orf5 (GAP-like protein N61) (LOC610414), mRNA Length = 2307 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 tatcaacagaatggaaggttt 163 ||||||||||||||||||||| Sbjct: 2224 tatcaacagaatggaaggttt 2244
>ref|XM_850399.1| PREDICTED: Canis familiaris hypothetical protein LOC612665 (LOC612665), mRNA Length = 1184 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 448 aacctcgtcttgcaccacctggatg 472 |||||||| |||||||||||||||| Sbjct: 369 aacctcgtattgcaccacctggatg 345
>emb|AL513132.6| Human DNA sequence from clone RP11-460C6 on chromosome 9 Contains a malic enzyme pseudogene, complete sequence Length = 180296 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tgtgcttttcttgcattgcta 103 ||||||||||||||||||||| Sbjct: 14041 tgtgcttttcttgcattgcta 14061
>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8, complete sequence Length = 217745 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 532 ttctctctccgtctccatatctttgagcttctt 564 ||||||||| |||||||||||| || ||||||| Sbjct: 96201 ttctctctctgtctccatatctgtgtgcttctt 96169
>gb|AC161609.6| Mus musculus BAC clone RP23-139D15 from chromosome 14, complete sequence Length = 219723 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acagaatggaaggtttcagg 167 |||||||||||||||||||| Sbjct: 170471 acagaatggaaggtttcagg 170452
>gb|AY296060.1| Danio rerio Bcl9 mRNA, complete cds Length = 4456 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 aggccttgtccatttttgag 625 |||||||||||||||||||| Sbjct: 298 aggccttgtccatttttgag 279
>ref|XM_427821.1| PREDICTED: Gallus gallus similar to beta myosin heavy chain (LOC430265), partial mRNA Length = 408 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tctttgagcttcttctgaag 570 |||||||||||||||||||| Sbjct: 401 tctttgagcttcttctgaag 382
>gb|AC129205.3| Mus musculus BAC clone RP24-235I5 from chromosome 19, complete sequence Length = 165024 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 agaacctcgtcttgcaccac 465 |||||||||||||||||||| Sbjct: 100850 agaacctcgtcttgcaccac 100831
>emb|CR936241.17| Zebrafish DNA sequence from clone DKEY-18J18 in linkage group 18, complete sequence Length = 100610 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 543 tctccatatctttgagcttcttctgaag 570 ||||||||||| ||||||||| |||||| Sbjct: 27068 tctccatatctgtgagcttctcctgaag 27095
>gb|AC138400.12| Mus musculus chromosome 14, clone RP23-260C21, complete sequence Length = 213423 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 acagaatggaaggtttcagg 167 |||||||||||||||||||| Sbjct: 38694 acagaatggaaggtttcagg 38713
>gb|AC146502.2| Danio rerio clone CH211-262M17, complete sequence Length = 134798 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tcttccaataaaacatcaaa 34 |||||||||||||||||||| Sbjct: 11905 tcttccaataaaacatcaaa 11886
>gb|AC134901.4| Mus musculus BAC clone RP23-287E23 from chromosome 18, complete sequence Length = 188224 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 tagcttgtgcttttcttgcattgc 101 ||||||||||||||| |||||||| Sbjct: 4670 tagcttgtgcttttcctgcattgc 4647
>gb|AC124548.5| Mus musculus BAC clone RP23-276P11 from 18, complete sequence Length = 173805 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 tagcttgtgcttttcttgcattgc 101 ||||||||||||||| |||||||| Sbjct: 144127 tagcttgtgcttttcctgcattgc 144104
>gb|AC115305.4| Mus musculus BAC clone RP24-372L1 from 18, complete sequence Length = 155389 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 ttctatcaacagaatggaaggttt 163 ||||||||||| |||||||||||| Sbjct: 97683 ttctatcaacaaaatggaaggttt 97706
>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence Length = 124550 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tttagcttgtgcttttcttg 95 |||||||||||||||||||| Sbjct: 45278 tttagcttgtgcttttcttg 45297
>gb|AC009116.8| Homo sapiens chromosome 16 clone RP11-477D3, complete sequence Length = 172533 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 accataccagactcaagaaa 528 |||||||||||||||||||| Sbjct: 84403 accataccagactcaagaaa 84384
>dbj|AK030120.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932443G22 product:polycystic kidney disease 2-like 2, full insert sequence Length = 3658 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ttctatcaacagaatggaaggttt 163 ||||||||||| |||||||||||| Sbjct: 3460 ttctatcaacaaaatggaaggttt 3437
>ref|NM_001005604.1| Danio rerio Bcl9 (LOC449616), mRNA Length = 4456 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 aggccttgtccatttttgag 625 |||||||||||||||||||| Sbjct: 298 aggccttgtccatttttgag 279
>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete sequence Length = 180092 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 gagcttcttctgaaggtcag 575 |||||||||||||||||||| Sbjct: 124722 gagcttcttctgaaggtcag 124703
>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete sequence Length = 208470 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 cacctggatgtcaacctctggtct 486 ||||| |||||||||||||||||| Sbjct: 26916 caccttgatgtcaacctctggtct 26893
>dbj|AP002456.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-956A8, complete sequence Length = 114109 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 aaaactacaaggagcacaagaacc 55 ||||||| |||||||||||||||| Sbjct: 11025 aaaactataaggagcacaagaacc 11048
>dbj|AP000796.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-14D14, complete sequence Length = 102173 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 aaaactacaaggagcacaagaacc 55 ||||||| |||||||||||||||| Sbjct: 14258 aaaactataaggagcacaagaacc 14281
>gb|BC108078.1| Danio rerio zgc:123333, mRNA (cDNA clone MGC:123333 IMAGE:7292748), complete cds Length = 1739 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 gcttcttctgaaggtcagtg 577 |||||||||||||||||||| Sbjct: 1604 gcttcttctgaaggtcagtg 1585
>gb|AC163039.6| Mus musculus BAC clone RP23-188J1 from chromosome 14, complete sequence Length = 198538 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acagaatggaaggtttcagg 167 |||||||||||||||||||| Sbjct: 26761 acagaatggaaggtttcagg 26742
>gb|AC102591.14| Mus musculus chromosome 3, clone RP23-336B10, complete sequence Length = 216906 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ttgtccatttttgagatgtt 630 |||||||||||||||||||| Sbjct: 57001 ttgtccatttttgagatgtt 56982
>ref|NM_001037388.1| Danio rerio zgc:123333 (zgc:123333), mRNA Length = 1739 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 gcttcttctgaaggtcagtg 577 |||||||||||||||||||| Sbjct: 1604 gcttcttctgaaggtcagtg 1585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,664,103 Number of Sequences: 3902068 Number of extensions: 5664103 Number of successful extensions: 105245 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 105059 Number of HSP's gapped (non-prelim): 176 length of query: 677 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 654 effective length of database: 17,143,297,704 effective search space: 11211716698416 effective search space used: 11211716698416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)