Clone Name | rbasd17g01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469336.1| Oryza sativa (japonica cultivar-group), mRNA Length = 805 Score = 167 bits (84), Expect = 5e-38 Identities = 153/176 (86%) Strand = Plus / Minus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 336 gcagcagcctcggagacaacagtctcatgctgaatggtacggggacccattacagcatca 277 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgccctgagcaatagtggac 352 |||||||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 276 acagccctatgtgccatggcactaccagtaccaaaagccatgccttgagcaatagtggaa 217 Query: 353 ccaattccgctcatgataccgccaccgctgctctgggtagtagcaggaggaggagc 408 |||||||| | || |||| |||||| | | |||||| || ||| ||||||||||| Sbjct: 216 ccaattcctcccaggatagagccacctccgttctgggcaggagctggaggaggagc 161 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 |||||||||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct: 477 cggcggcactcgttcagcatatccaggtagaattggcacttgctgatgtcacttccatag 418 Query: 155 tggttgatgcaatcttggaaggccttgga 183 | ||||||||| ||||||||||||||||| Sbjct: 417 ttgttgatgcagtcttggaaggccttgga 389
>dbj|AB110171.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPB021 Length = 732 Score = 167 bits (84), Expect = 5e-38 Identities = 153/176 (86%) Strand = Plus / Minus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 325 gcagcagcctcggagacaacagtctcatgctgaatggtacggggacccattacagcatca 266 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgccctgagcaatagtggac 352 |||||||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 265 acagccctatgtgccatggcactaccagtaccaaaagccatgccttgagcaatagtggaa 206 Query: 353 ccaattccgctcatgataccgccaccgctgctctgggtagtagcaggaggaggagc 408 |||||||| | || |||| |||||| | | |||||| || ||| ||||||||||| Sbjct: 205 ccaattcctcccaggatagagccacctccgttctgggcaggagctggaggaggagc 150 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 |||||||||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct: 466 cggcggcactcgttcagcatatccaggtagaattggcacttgctgatgtcacttccatag 407 Query: 155 tggttgatgcaatcttggaaggccttgga 183 | ||||||||| ||||||||||||||||| Sbjct: 406 ttgttgatgcagtcttggaaggccttgga 378
>dbj|AK062080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F09, full insert sequence Length = 788 Score = 167 bits (84), Expect = 5e-38 Identities = 153/176 (86%) Strand = Plus / Minus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 353 gcagcagcctcggagacaacagtctcatgctgaatggtacggggacccattacagcatca 294 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgccctgagcaatagtggac 352 |||||||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 293 acagccctatgtgccatggcactaccagtaccaaaagccatgccttgagcaatagtggaa 234 Query: 353 ccaattccgctcatgataccgccaccgctgctctgggtagtagcaggaggaggagc 408 |||||||| | || |||| |||||| | | |||||| || ||| ||||||||||| Sbjct: 233 ccaattcctcccaggatagagccacctccgttctgggcaggagctggaggaggagc 178 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 |||||||||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct: 494 cggcggcactcgttcagcatatccaggtagaattggcacttgctgatgtcacttccatag 435 Query: 155 tggttgatgcaatcttggaaggccttgga 183 | ||||||||| ||||||||||||||||| Sbjct: 434 ttgttgatgcagtcttggaaggccttgga 406
>dbj|AK120726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002L22, full insert sequence Length = 761 Score = 159 bits (80), Expect = 1e-35 Identities = 116/128 (90%) Strand = Plus / Minus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 354 gcagcagcctcggagacaacagtctcatgctgaatggtacggggacccattacagcatca 295 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgccctgagcaatagtggac 352 |||||||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 294 acagccctatgtgccatggcactaccagtaccaaaagccatgccttgagcaatagtggaa 235 Query: 353 ccaattcc 360 |||||||| Sbjct: 234 ccaattcc 227 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 |||||||||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct: 495 cggcggcactcgttcagcatatccaggtagaattggcacttgctgatgtcacttccatag 436 Query: 155 tggttgatgcaatcttggaaggccttgga 183 | ||||||||| ||||||||||||||||| Sbjct: 435 ttgttgatgcagtcttggaaggccttgga 407
>gb|AY596532.1| Saccharum officinarum clone SCQGLR1085E10, complete sequence Length = 887 Score = 135 bits (68), Expect = 2e-28 Identities = 113/128 (88%) Strand = Plus / Minus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct: 431 gcagcagcctctgagacaacagtctcatgctgaatggtccggggacccattacagcatca 372 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgccctgagcaatagtggac 352 ||||||||||| ||||| ||||| |||||||| || ||||| || |||||||| |||||| Sbjct: 371 acagccctgtgtgccatggcactaccagtaccaaatgccataccttgagcaatggtggac 312 Query: 353 ccaattcc 360 || ||||| Sbjct: 311 ccgattcc 304 Score = 131 bits (66), Expect = 2e-27 Identities = 81/86 (94%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 569 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatctcgctgccatag 510 Query: 155 tggttgatgcaatcttggaaggcctt 180 | ||||| ||||||||||||||||| Sbjct: 509 ttgttgagacaatcttggaaggcctt 484 Score = 44.1 bits (22), Expect = 0.45 Identities = 56/66 (84%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 398 ggaggaggagcttgacgggctggagctggtgggtttctcacaggagcaagcacgtggagc 457 ||||||||||| || || ||||| ||||||||| ||||| ||||| |||||||||||| Sbjct: 266 ggaggaggagcctggcgcgctggctgtggtgggttcctcactggagc-agcacgtggagc 208 Query: 458 agggcg 463 ||||| Sbjct: 207 cgggcg 202
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 127 bits (64), Expect = 4e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 27052767 gcagcagcctcggagacaacagtctcatgctgaatggtacggggacccattacagcatca 27052826 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgcc 336 |||||||| || ||||| ||||| |||||||| ||||||||||| Sbjct: 27052827 acagccctatgtgccatggcactaccagtaccaaaagccatgcc 27052870 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 |||||||||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct: 27052255 cggcggcactcgttcagcatatccaggtagaattggcacttgctgatgtcacttccatag 27052314 Query: 155 tggttgatgca 165 | ||||||||| Sbjct: 27052315 ttgttgatgca 27052325 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 338 tgagcaatagtggacccaattccgctcatgataccgccaccgctgctctgggtagtagca 397 |||||||||||||| |||||||| | || |||| |||||| | | |||||| || ||| Sbjct: 27052963 tgagcaatagtggaaccaattcctcccaggatagagccacctccgttctgggcaggagct 27053022 Query: 398 ggaggaggagc 408 ||||||||||| Sbjct: 27053023 ggaggaggagc 27053033 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 gctgcggcgagccatggcgg 501 |||||||||||||||||||| Sbjct: 27055237 gctgcggcgagccatggcgg 27055256
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 127 bits (64), Expect = 4e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 27144090 gcagcagcctcggagacaacagtctcatgctgaatggtacggggacccattacagcatca 27144149 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgcc 336 |||||||| || ||||| ||||| |||||||| ||||||||||| Sbjct: 27144150 acagccctatgtgccatggcactaccagtaccaaaagccatgcc 27144193 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 |||||||||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct: 27143578 cggcggcactcgttcagcatatccaggtagaattggcacttgctgatgtcacttccatag 27143637 Query: 155 tggttgatgca 165 | ||||||||| Sbjct: 27143638 ttgttgatgca 27143648 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 338 tgagcaatagtggacccaattccgctcatgataccgccaccgctgctctgggtagtagca 397 |||||||||||||| |||||||| | || |||| |||||| | | |||||| || ||| Sbjct: 27144286 tgagcaatagtggaaccaattcctcccaggatagagccacctccgttctgggcaggagct 27144345 Query: 398 ggaggaggagc 408 ||||||||||| Sbjct: 27144346 ggaggaggagc 27144356 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 gctgcggcgagccatggcgg 501 |||||||||||||||||||| Sbjct: 27146560 gctgcggcgagccatggcgg 27146579
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 127 bits (64), Expect = 4e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 233 gcagcggcctcagacacaacagtctcatgctgaatggtacggggacccatcacagcgtca 292 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 6632 gcagcagcctcggagacaacagtctcatgctgaatggtacggggacccattacagcatca 6573 Query: 293 acagccctgtgcgccatagcactgccagtaccgaaagccatgcc 336 |||||||| || ||||| ||||| |||||||| ||||||||||| Sbjct: 6572 acagccctatgtgccatggcactaccagtaccaaaagccatgcc 6529 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 |||||||||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct: 7144 cggcggcactcgttcagcatatccaggtagaattggcacttgctgatgtcacttccatag 7085 Query: 155 tggttgatgca 165 | ||||||||| Sbjct: 7084 ttgttgatgca 7074 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 338 tgagcaatagtggacccaattccgctcatgataccgccaccgctgctctgggtagtagca 397 |||||||||||||| |||||||| | || |||| |||||| | | |||||| || ||| Sbjct: 6436 tgagcaatagtggaaccaattcctcccaggatagagccacctccgttctgggcaggagct 6377 Query: 398 ggaggaggagc 408 ||||||||||| Sbjct: 6376 ggaggaggagc 6366 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 gctgcggcgagccatggcgg 501 |||||||||||||||||||| Sbjct: 4162 gctgcggcgagccatggcgg 4143
>gb|AY105039.1| Zea mays PCO113080 mRNA sequence Length = 802 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 556 cggcggcactcgttcagcatgtctaggtagaactggcacttgctgatctcgctgccatag 497 Query: 155 tggttgatgcaatcttggaaggcctt 180 | ||||| ||||||||||| ||||| Sbjct: 496 ttgttgagacaatcttggaaagcctt 471 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 253 agtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgccatagc 312 |||||||||||| ||||| |||||||| | |||| ||||||||||||||| ||||| || Sbjct: 398 agtctcatgctggatggtccggggacctaatacagagtcaacagccctgtgtgccatggc 339 Query: 313 actgccagtaccgaaagccatgccctgagcaatagtggacccaattcc 360 ||| || || || || ||||| || |||||||| |||||||||||||| Sbjct: 338 actacccgtgccaaacgccataccttgagcaatggtggacccaattcc 291
>gb|BT017948.1| Zea mays clone EL01N0521H06.c mRNA sequence Length = 700 Score = 107 bits (54), Expect = 4e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 95 cggcggcactcgttcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtag 154 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 486 cggcggcactcgttcagcatgtctaggtagaactggcacttgctgatctcgctgccatag 427 Query: 155 tggttgatgcaatcttggaaggcctt 180 | ||| | ||||||||||| ||||| Sbjct: 426 ttgttcagacaatcttggaaagcctt 401 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 253 agtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgccatagc 312 |||||||||||| ||||| |||||||| | |||| ||||||||||||||| ||||| || Sbjct: 328 agtctcatgctggatggtccggggacctaatacagagtcaacagccctgtgtgccatggc 269 Query: 313 actgccagtaccgaaagccatgccctgagcaatagtggacccaattcc 360 ||| || || || || ||||| || |||||||| |||||||||||||| Sbjct: 268 actacccgtgccaaacgccataccttgagcaatggtggacccaattcc 221
>ref|NM_125836.2| Arabidopsis thaliana unknown protein AT5G64400 transcript variant AT5G64400.1 mRNA, complete cds Length = 700 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 249 caacagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgcca 308 |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| || | Sbjct: 311 caacagcctcatgctgaatggttcgtggacccatcacagaatcaacagccctgtgtgcaa 252 Query: 309 tagcactgccagtaccgaaagccatgccctgagcaat 345 ||||| |||||||| |||||||| ||||||||||| Sbjct: 251 ctgcacttccagtaccaaaagccataccctgagcaat 215
>ref|NM_001037060.1| Arabidopsis thaliana unknown protein AT5G64400 transcript variant AT5G64400.2 mRNA, complete cds Length = 980 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 249 caacagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgcca 308 |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| || | Sbjct: 335 caacagcctcatgctgaatggttcgtggacccatcacagaatcaacagccctgtgtgcaa 276 Query: 309 tagcactgccagtaccgaaagccatgccctgagcaat 345 ||||| |||||||| |||||||| ||||||||||| Sbjct: 275 ctgcacttccagtaccaaaagccataccctgagcaat 239
>gb|AY063045.1| Arabidopsis thaliana unknown protein (At5g64400) mRNA, complete cds Length = 466 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 249 caacagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgcca 308 |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| || | Sbjct: 253 caacagcctcatgctgaatggttcgtggacccatcacagaatcaacagccctgtgtgcaa 194 Query: 309 tagcactgccagtaccgaaagccatgccctgagcaat 345 ||||| |||||||| |||||||| ||||||||||| Sbjct: 193 ctgcacttccagtaccaaaagccataccctgagcaat 157
>gb|AY034898.1| Arabidopsis thaliana unknown protein (At5g64400) mRNA, complete cds Length = 646 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 249 caacagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgcca 308 |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| || | Sbjct: 313 caacagcctcatgctgaatggttcgtggacccatcacagaatcaacagccctgtgtgcaa 254 Query: 309 tagcactgccagtaccgaaagccatgccctgagcaat 345 ||||| |||||||| |||||||| ||||||||||| Sbjct: 253 ctgcacttccagtaccaaaagccataccctgagcaat 217
>emb|BX830265.1|CNS09YOU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB6ZA07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 691 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 249 caacagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgcca 308 |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| || | Sbjct: 302 caacagcctcatgctgaatggttcgtggacccatcacagaatcaacagccctgtgtgcaa 243 Query: 309 tagcactgccagtaccgaaagccatgccctgagcaat 345 ||||| |||||||| |||||||| ||||||||||| Sbjct: 242 ctgcacttccagtaccaaaagccataccctgagcaat 206
>emb|BX833720.1|CNS09Z9S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL73ZE02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 599 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 249 caacagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgcca 308 |||||| ||||||||||||||| || |||||||||||| |||||||||||||| || | Sbjct: 269 caacagcctcatgctgaatggttcgtggacccatcacaaaatcaacagccctgtgtgcaa 210 Query: 309 tagcactgccagtaccgaaagccatgccctgagcaat 345 ||||| |||||||| |||||||| ||||||||||| Sbjct: 209 ctgcacttccagtaccaaaagccataccctgagcaat 173
>dbj|AB008268.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1 Length = 83594 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 249 caacagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgcca 308 |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| || | Sbjct: 74495 caacagcctcatgctgaatggttcgtggacccatcacagaatcaacagccctgtgtgcaa 74436 Query: 309 tagcactgccagtaccgaaagccat 333 ||||| |||||||| |||||||| Sbjct: 74435 ctgcacttccagtaccaaaagccat 74411
>ref|NM_120994.2| Arabidopsis thaliana unknown protein AT5G09570 mRNA, complete cds Length = 695 Score = 79.8 bits (40), Expect = 8e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 108 tcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtagtggttgatgcaat 167 |||||||||| | ||||||||||||||| ||||||||||| || | ||||||| ||||| Sbjct: 443 tcagcatgtccatgtagaactggcacttactgatgtcgcttccaaaatggttgacgcaat 384 Query: 168 cttggaaggccttgga 183 ||||||| |||||||| Sbjct: 383 cttggaaagccttgga 368
>gb|BT003661.1| Arabidopsis thaliana At5g09570 mRNA, complete cds Length = 420 Score = 79.8 bits (40), Expect = 8e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 108 tcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtagtggttgatgcaat 167 |||||||||| | ||||||||||||||| ||||||||||| || | ||||||| ||||| Sbjct: 379 tcagcatgtccatgtagaactggcacttactgatgtcgcttccaaaatggttgacgcaat 320 Query: 168 cttggaaggccttgga 183 ||||||| |||||||| Sbjct: 319 cttggaaagccttgga 304
>dbj|AK118694.1| Arabidopsis thaliana At5g09570 mRNA for unknown protein, complete cds, clone: RAFL19-96-B14 Length = 695 Score = 79.8 bits (40), Expect = 8e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 108 tcagcatgtcaaggtagaactggcacttgctgatgtcgctgccgtagtggttgatgcaat 167 |||||||||| | ||||||||||||||| ||||||||||| || | ||||||| ||||| Sbjct: 443 tcagcatgtccatgtagaactggcacttactgatgtcgcttccaaaatggttgacgcaat 384 Query: 168 cttggaaggccttgga 183 ||||||| |||||||| Sbjct: 383 cttggaaagccttgga 368
>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project) Length = 92491 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 108 tcagcatgtcaaggtagaactggcacttgctgatgtcgct 147 |||||||||| | ||||||||||||||| ||||||||||| Sbjct: 76792 tcagcatgtccatgtagaactggcacttactgatgtcgct 76831
>gb|AY389758.1| Hyacinthus orientalis unknown mRNA Length = 606 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 251 acagtctcatgctgaatggtacggggacccatcacagcgtcaacagccctgtgcgccata 310 ||||| || ||||| ||||| || || ||||| || | ||| ||||||||||| || | Sbjct: 268 acagtttcgtgctggatggttcgaggtcccatgactgagtccacagccctgtgagcgacg 209 Query: 311 gcactgccagtaccgaaagccatgccctgagcaatagtggacccaattcc 360 ||||| ||||| || |||||||| || ||||||||||| || |||||||| Sbjct: 208 gcacttccagtgccaaaagccataccttgagcaatagttgaaccaattcc 159
>gb|AC165080.4| Mus musculus BAC clone RP24-93F20 from chromosome 9, complete sequence Length = 194427 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 385 ctgggtagtagcaggaggaggagct 409 ||||||||||||||||||||||||| Sbjct: 167822 ctgggtagtagcaggaggaggagct 167846
>gb|U63545.1|MMNKTR2 Mus musculus natural killer tumor recognition protein (Nktr) gene, exons 6, 7 and 8, and partial cds Length = 2859 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 385 ctgggtagtagcaggaggaggagct 409 ||||||||||||||||||||||||| Sbjct: 1315 ctgggtagtagcaggaggaggagct 1291
>gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein receptor-related protein 5 (LRP5) gene, exons 10 through 23 and complete cds Length = 64475 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 175 ggccttggatgggttgccacac 196 |||||||||||||||||||||| Sbjct: 9668 ggccttggatgggttgccacac 9647
>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete sequence Length = 198720 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 175 ggccttggatgggttgccacac 196 |||||||||||||||||||||| Sbjct: 146151 ggccttggatgggttgccacac 146130
>dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:RP11-715N9, complete sequence Length = 204439 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 175 ggccttggatgggttgccacac 196 |||||||||||||||||||||| Sbjct: 92910 ggccttggatgggttgccacac 92889
>gb|AC131700.3| Mus musculus BAC clone RP24-67N3 from chromosome 6, complete sequence Length = 197050 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 445 aagcacgtggagcagggcgggaaga 469 ||||| ||||||||||||||||||| Sbjct: 87327 aagcaggtggagcagggcgggaaga 87351
>emb|AL365274.17| Human DNA sequence from clone RP11-298A17 on chromosome 9 Contains the DAB2IP gene for DAB2 interacting protein (AF9Q34, DIP1/2, KIAA1743) and four CpG islands, complete sequence Length = 171941 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 aaccagccccagctcctcccc 95 ||||||||||||||||||||| Sbjct: 86802 aaccagccccagctcctcccc 86822
>gb|AY129338.1| Mycobacteriophage Omega, complete sequence Length = 110865 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 412 acgggctggagctggtgggtt 432 ||||||||||||||||||||| Sbjct: 48855 acgggctggagctggtgggtt 48835
>gb|AY039028.1| Mus musculus core 1 beta-1,3-N-acetylglucosaminyltransferase mRNA, complete cds Length = 1653 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 1091 tgaaccagccccagctcctc 1110
>ref|NM_111390.1| Arabidopsis thaliana catalytic AT3G05170 mRNA, complete cds Length = 1297 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 atcagcagcattgtccattg 221 |||||||||||||||||||| Sbjct: 1117 atcagcagcattgtccattg 1098
>gb|AC166652.6| Mus musculus chromosome 8, clone RP24-129F24, complete sequence Length = 164098 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 135705 tgaaccagccccagctcctc 135724
>ref|XM_465997.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cccagctcctccccggcggc 101 |||||||||||||||||||| Sbjct: 699 cccagctcctccccggcggc 680
>ref|NM_131221.1| Danio rerio ATPase, Na+/K+ transporting, beta 3a polypeptide (atp1b3a), mRNA Length = 1286 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 agcaggaggaggagcttgac 413 |||||||||||||||||||| Sbjct: 1216 agcaggaggaggagcttgac 1197
>ref|XM_473558.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cccagctcctccccggcggc 101 |||||||||||||||||||| Sbjct: 199 cccagctcctccccggcggc 180
>ref|NM_028189.2| Mus musculus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 (B3gnt3), mRNA Length = 2126 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 1164 tgaaccagccccagctcctc 1183
>gb|BC075011.2| Homo sapiens acyl-CoA thioesterase 12, mRNA (cDNA clone MGC:103995 IMAGE:30915403), complete cds Length = 1736 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cttatcatcagcagcattgt 215 |||||||||||||||||||| Sbjct: 898 cttatcatcagcagcattgt 879
>gb|BC075010.2| Homo sapiens acyl-CoA thioesterase 12, mRNA (cDNA clone MGC:104156 IMAGE:30915616), complete cds Length = 1741 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cttatcatcagcagcattgt 215 |||||||||||||||||||| Sbjct: 903 cttatcatcagcagcattgt 884
>gb|BC026418.1| Mus musculus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, mRNA (cDNA clone MGC:31283 IMAGE:4218953), complete cds Length = 2126 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 1164 tgaaccagccccagctcctc 1183
>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome Length = 58638 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cccagctcctccccggcggc 101 |||||||||||||||||||| Sbjct: 16497 cccagctcctccccggcggc 16478
>ref|NM_130767.1| Homo sapiens acyl-CoA thioesterase 12 (ACOT12), mRNA Length = 1820 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cttatcatcagcagcattgt 215 |||||||||||||||||||| Sbjct: 905 cttatcatcagcagcattgt 886
>gb|BC065944.1| Danio rerio ATPase, Na+/K+ transporting, beta 3a polypeptide, mRNA (cDNA clone MGC:76862 IMAGE:6963397), complete cds Length = 2025 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 agcaggaggaggagcttgac 413 |||||||||||||||||||| Sbjct: 1085 agcaggaggaggagcttgac 1066
>gb|BC059426.1| Danio rerio ATPase, Na+/K+ transporting, beta 3a polypeptide, mRNA (cDNA clone MGC:73044 IMAGE:4790814), complete cds Length = 2194 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 agcaggaggaggagcttgac 413 |||||||||||||||||||| Sbjct: 1269 agcaggaggaggagcttgac 1250
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence Length = 140064 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 atcagcagcattgtccattg 221 |||||||||||||||||||| Sbjct: 64221 atcagcagcattgtccattg 64202
>emb|AL390959.12| Human DNA sequence from clone RP1-44L3 on chromosome 6 Contains a CpG island, complete sequence Length = 105239 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 158 ttgatgcaatcttggaaggccttggatg 185 |||||| |||||||||||| |||||||| Sbjct: 36109 ttgatgaaatcttggaaggtcttggatg 36136
>ref|XM_966372.1| PREDICTED: Tribolium castaneum similar to Tubulin tyrosine ligase-like protein 2 (Testis-specific protein NYD-TSPG) (LOC660112), mRNA Length = 12990 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tagcaggaggaggagcttga 412 |||||||||||||||||||| Sbjct: 4466 tagcaggaggaggagcttga 4447
>emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment 9/24 Length = 299350 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ttgatgcaatcttggaaggc 177 |||||||||||||||||||| Sbjct: 139732 ttgatgcaatcttggaaggc 139751
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence Length = 164572 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cccagctcctccccggcggc 101 |||||||||||||||||||| Sbjct: 75260 cccagctcctccccggcggc 75241
>dbj|AK122960.1| Homo sapiens cDNA FLJ16680 fis, clone TLIVE2008221, moderately similar to Rattus norvegicus rACH mRNA for cytoplasmic acetyl-CoA hydrolase Length = 2077 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cttatcatcagcagcattgt 215 |||||||||||||||||||| Sbjct: 902 cttatcatcagcagcattgt 883
>dbj|AK144180.1| Mus musculus bladder RCB-0544 MBT-2 cDNA, RIKEN full-length enriched library, clone:G430078I04 product:UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, full insert sequence Length = 1913 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 1144 tgaaccagccccagctcctc 1163
>dbj|AK144117.1| Mus musculus RCB-0464 Meth-A cDNA, RIKEN full-length enriched library, clone:G430024E09 product:UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, full insert sequence Length = 3388 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 1162 tgaaccagccccagctcctc 1181
>gb|AC008411.5| Homo sapiens chromosome 5 clone CTC-281B15, complete sequence Length = 108098 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cttatcatcagcagcattgt 215 |||||||||||||||||||| Sbjct: 75898 cttatcatcagcagcattgt 75917
>dbj|AK008674.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210008L19 product:UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, full insert sequence Length = 1963 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 1211 tgaaccagccccagctcctc 1230
>gb|AY037785.1| Mus musculus beta1,3 N-acetylglucosaminyltransferase-3 (B3gnt3) mRNA, complete cds Length = 1732 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 1141 tgaaccagccccagctcctc 1160
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cccagctcctccccggcggc 101 |||||||||||||||||||| Sbjct: 28715698 cccagctcctccccggcggc 28715717
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cccagctcctccccggcggc 101 |||||||||||||||||||| Sbjct: 18973637 cccagctcctccccggcggc 18973656
>gb|AC078847.2|AC078847 Homo sapiens chromosome 7 clone RP11-3M15, complete sequence Length = 170919 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 aggagcttgacgggctggag 422 |||||||||||||||||||| Sbjct: 59571 aggagcttgacgggctggag 59552
>gb|AC009276.9|AC009276 Homo sapiens chromosome 7 clone RP11-239G19, complete sequence Length = 163631 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 aggagcttgacgggctggag 422 |||||||||||||||||||| Sbjct: 18979 aggagcttgacgggctggag 18998
>dbj|AP005842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22 Length = 68256 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cccagctcctccccggcggc 101 |||||||||||||||||||| Sbjct: 28958 cccagctcctccccggcggc 28977
>emb|X89722.1|BRNAKATPB B.rerio mRNA for Na, K-ATPase subunit Length = 1286 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 agcaggaggaggagcttgac 413 |||||||||||||||||||| Sbjct: 1216 agcaggaggaggagcttgac 1197
>emb|CR377211.7| Zebrafish DNA sequence from clone DKEYP-13A3 in linkage group 2, complete sequence Length = 186342 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 agcaggaggaggagcttgac 413 |||||||||||||||||||| Sbjct: 145207 agcaggaggaggagcttgac 145226
>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence Length = 214859 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 agcaagcacgtggagcaggg 461 |||||||||||||||||||| Sbjct: 61306 agcaagcacgtggagcaggg 61325
>gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, complete sequence Length = 217343 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tgaaccagccccagctcctc 92 |||||||||||||||||||| Sbjct: 148253 tgaaccagccccagctcctc 148234
>dbj|AB078619.1| Homo sapiens hCACH-1 mRNA for cytosolic acetyl-CoA hydrolase, complete cds Length = 1820 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cttatcatcagcagcattgt 215 |||||||||||||||||||| Sbjct: 905 cttatcatcagcagcattgt 886 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,423,406 Number of Sequences: 3902068 Number of extensions: 4423406 Number of successful extensions: 93873 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93627 Number of HSP's gapped (non-prelim): 245 length of query: 518 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 495 effective length of database: 17,143,297,704 effective search space: 8485932363480 effective search space used: 8485932363480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)