ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17f20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470650.1| Oryza sativa (japonica cultivar-group), predic... 365 1e-97
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 365 1e-97
3emb|AJ550618.1|OSA550618 Oryza sativa (indica cultivar-group) mR... 365 1e-97
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 365 1e-97
5gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome... 365 1e-97
6dbj|AK073184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
7gb|AY110995.1| Zea mays CL3138_1 mRNA sequence 287 2e-74
8ref|NM_120360.2| Arabidopsis thaliana RHL2 (ROOT HAIRLESS 2); AT... 56 1e-04
9ref|NM_120361.2| Arabidopsis thaliana unknown protein AT5G02830 ... 56 1e-04
10emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BA... 56 1e-04
11emb|AJ297842.1|ATH297842 Arabidopsis thaliana mRNA for topoisome... 56 1e-04
12emb|BX830246.1|CNS0A077 Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
13emb|BX830004.1|CNS0A076 Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
14emb|BX832591.1|CNS09ZUI Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
15gb|AC131532.7| Homo sapiens 12 BAC RP11-408B11 (Roswell Park Can... 46 0.11
16gb|AC105395.1| Homo sapiens chromosome 4 clone RP11-397A19, comp... 44 0.45
17emb|AL033403.1|HS88D7 Human DNA sequence from clone RP6-88D7 on ... 42 1.8
18gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Ca... 42 1.8
19gb|AF323679.1|AF323679 Arabidopsis thaliana putative topoisomera... 42 1.8
20emb|BX831096.1|CNS09ZI6 Arabidopsis thaliana Full-length cDNA Co... 42 1.8
21gb|AC004813.2|AC004813 Homo sapiens clone 277F10, complete sequence 42 1.8
22gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
23gb|AC151968.3| Mus musculus BAC clone RP24-247B20 from chromosom... 40 7.0
24gb|AY738117.1| Homo sapiens matrix metalloproteinase 2 (gelatina... 40 7.0
25ref|NM_004530.2| Homo sapiens matrix metallopeptidase 2 (gelatin... 40 7.0
26gb|AC005158.3| Homo sapiens BAC clone GS1-250N6 from 7, complete... 40 7.0
27emb|Z79605.1|CEZK678 Caenorhabditis elegans Cosmid ZK678, comple... 40 7.0
28gb|AC124698.4| Mus musculus BAC clone RP24-180F7 from chromosome... 40 7.0
29gb|BC002576.2| Homo sapiens matrix metallopeptidase 2 (gelatinas... 40 7.0
30gb|AC100801.4| Homo sapiens chromosome 8, clone CTA-392E5, compl... 40 7.0
31emb|AL121800.1|DMBN5I9 Drosophila melanogaster BAC clone BACN5I9 40 7.0
32gb|AC162922.4| Mus musculus BAC clone RP23-314M6 from chromosome... 40 7.0
33emb|AL662921.10| Mouse DNA sequence from clone RP23-397K10 on ch... 40 7.0
34emb|CR854930.5| Zebrafish DNA sequence from clone CH211-268F11 i... 40 7.0
35gb|AC105351.2| Drosophila melanogaster X BAC RP98-34B12 (Roswell... 40 7.0
36gb|AC092352.2| Homo sapiens chromosome 16 clone RP11-2M17, compl... 40 7.0
37gb|AC161470.3| Gallus gallus BAC clone CH261-85J8 from chromosom... 40 7.0
38gb|AF104858.1|CEPRP1P1 Caenorhabditis elegans putative RNA-bindi... 40 7.0
39ref|NM_058326.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-do... 40 7.0
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
41gb|AC154745.3| Mus musculus BAC clone RP24-395F6 from chromosome... 40 7.0
42gb|AC007336.6| Homo sapiens chromosome 16 clone RP11-212I21, com... 40 7.0
43gb|AF206725.6| Homo sapiens chromosome 8 clone CTA-392E5 map q21... 40 7.0
44gb|AY167088.1| Microcebus griseorufus clone YLE362 mitochondrial... 40 7.0
45gb|AY167087.1| Microcebus griseorufus clone YLE361 mitochondrial... 40 7.0
46gb|AY167086.1| Microcebus griseorufus clone YLE360 mitochondrial... 40 7.0
47gb|AY167085.1| Microcebus griseorufus clone YLE359 mitochondrial... 40 7.0
48gb|AY167084.1| Microcebus griseorufus clone YLE358 mitochondrial... 40 7.0
49gb|AY167082.1| Microcebus griseorufus clone YLE356 mitochondrial... 40 7.0
50gb|AY167081.1| Microcebus griseorufus clone YLE355 mitochondrial... 40 7.0
51gb|AY167080.1| Microcebus griseorufus clone YLE354 mitochondrial... 40 7.0
52gb|AY167079.1| Microcebus griseorufus clone YLE353 mitochondrial... 40 7.0
53gb|AY167078.1| Microcebus griseorufus clone YLE352 mitochondrial... 40 7.0
54gb|AY167077.1| Microcebus griseorufus clone YLE351 mitochondrial... 40 7.0
55ref|XM_308180.2| Anopheles gambiae str. PEST ENSANGP00000021521 ... 40 7.0
56emb|AJ298926.1|HSA298926 Homo sapiens partial MMP2 gene for meta... 40 7.0
57gb|AF063007.3| Caenorhabditis elegans cosmid R119, complete sequ... 40 7.0
58gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 ... 40 7.0
59dbj|AP000442.6| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.0
60emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chr... 40 7.0
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
62emb|AL831741.16| Mouse DNA sequence from clone RP23-337N2 on chr... 40 7.0
63emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chr... 40 7.0
64gb|M58552.1|HUMCLG4Q01 Human collagenase type IV (CLG4) gene, ex... 40 7.0
65gb|M33789.1|HUMCLG4 Human type-4 collagenase (CLG4) preproenzyme... 40 7.0
66emb|X58968.1|HSTYPIVCL H.sapiens RNA for 5` sequence of type IV ... 40 7.0 
>ref|XM_470650.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2493

 Score =  365 bits (184), Expect = 1e-97
 Identities = 292/328 (89%)
 Strand = Plus / Minus

                                                                        
Query: 189  aaatccagtcctcctgctgcagcttgaggggtagatatacctcagtcaggtactggaacc 248
            ||||||||||||  |||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct: 2491 aaatccagtcctgttgctgcagcttgagaggtagatagacctcagtgagatactggaaac 2432

                                                                        
Query: 249  caaacgagctgagagcctgaatctcagccttctgttttgttcgcaacatcgtctccaact 308
            |||| || ||||||||||| ||||||||||||||  | || |||||||||||||||| ||
Sbjct: 2431 caaatgaactgagagcctgtatctcagccttctgcctcgtccgcaacatcgtctccagct 2372

                                                                        
Query: 309  ccttcacccacccttcattttgcttcacgaagtcttcctctagcatctcttttcccacct 368
            |||||||||| |||||||| |||||||| ||||| ||||| |||| ||| || |||||||
Sbjct: 2371 ccttcacccatccttcattctgcttcacaaagtcctcctcaagcagctccttccccacct 2312

                                                                        
Query: 369  tgatatcgtgatcactcatgggaagccggcactgctccggtaccctgtacttgtccagat 428
            |||||||||||||| |||| |||||||||||||||||||| ||||  |||||||||||||
Sbjct: 2311 tgatatcgtgatcagtcatcggaagccggcactgctccggcacccgatacttgtccagat 2252

                                                                        
Query: 429  cacttggccgcacgccgagccacttgatatccggcgttgtcagattggcactgtcatacg 488
            | ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 2251 cgcttggccgcactccgagccacttgatatccggtgttgtcaggttggcactgtcatatg 2192

                                        
Query: 489  acatgttcttcgagccacacatatacac 516
            |||||||||| || |||||||| |||||
Sbjct: 2191 acatgttcttggaaccacacatgtacac 2164
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  365 bits (184), Expect = 1e-97
 Identities = 292/328 (89%)
 Strand = Plus / Minus

                                                                           
Query: 189     aaatccagtcctcctgctgcagcttgaggggtagatatacctcagtcaggtactggaacc 248
               ||||||||||||  |||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct: 9770663 aaatccagtcctgttgctgcagcttgagaggtagatagacctcagtgagatactggaaac 9770604

                                                                           
Query: 249     caaacgagctgagagcctgaatctcagccttctgttttgttcgcaacatcgtctccaact 308
               |||| || ||||||||||| ||||||||||||||  | || |||||||||||||||| ||
Sbjct: 9770603 caaatgaactgagagcctgtatctcagccttctgcctcgtccgcaacatcgtctccagct 9770544

                                                                           
Query: 309     ccttcacccacccttcattttgcttcacgaagtcttcctctagcatctcttttcccacct 368
               |||||||||| |||||||| |||||||| ||||| ||||| |||| ||| || |||||||
Sbjct: 9770543 ccttcacccatccttcattctgcttcacaaagtcctcctcaagcagctccttccccacct 9770484

                                                                           
Query: 369     tgatatcgtgatcactcatgggaagccggcactgctccggtaccctgtacttgtccagat 428
               |||||||||||||| |||| |||||||||||||||||||| ||||  |||||||||||||
Sbjct: 9770483 tgatatcgtgatcagtcatcggaagccggcactgctccggcacccgatacttgtccagat 9770424

                                                                           
Query: 429     cacttggccgcacgccgagccacttgatatccggcgttgtcagattggcactgtcatacg 488
               | ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 9770423 cgcttggccgcactccgagccacttgatatccggtgttgtcaggttggcactgtcatatg 9770364

                                           
Query: 489     acatgttcttcgagccacacatatacac 516
               |||||||||| || |||||||| |||||
Sbjct: 9770363 acatgttcttggaaccacacatgtacac 9770336
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>emb|AJ550618.1|OSA550618 Oryza sativa (indica cultivar-group) mRNA for Topoisomerase VI
            subunit A (spo11-3 gene)
          Length = 1329

 Score =  365 bits (184), Expect = 1e-97
 Identities = 292/328 (89%)
 Strand = Plus / Minus

                                                                        
Query: 189  aaatccagtcctcctgctgcagcttgaggggtagatatacctcagtcaggtactggaacc 248
            ||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct: 1327 aaatccagtcctgttgctgcagcttgagaggtagatagacctcagtgaggtactggaaac 1268

                                                                        
Query: 249  caaacgagctgagagcctgaatctcagccttctgttttgttcgcaacatcgtctccaact 308
            |||| || ||||||||||| ||||||||||||||  | || |||||||||||||||| ||
Sbjct: 1267 caaatgaactgagagcctgtatctcagccttctgcctcgtccgcaacatcgtctccagct 1208

                                                                        
Query: 309  ccttcacccacccttcattttgcttcacgaagtcttcctctagcatctcttttcccacct 368
            |||||||||| |||||||| |||||||| ||||| ||||| |||| ||| || |||||||
Sbjct: 1207 ccttcacccatccttcattctgcttcacaaagtcctcctcaagcagctccttccccacct 1148

                                                                        
Query: 369  tgatatcgtgatcactcatgggaagccggcactgctccggtaccctgtacttgtccagat 428
            |||||||||||||| |||| |||||||||||||||||||| ||||  |||||||||||||
Sbjct: 1147 tgatatcgtgatcagtcattggaagccggcactgctccggcacccgatacttgtccagat 1088

                                                                        
Query: 429  cacttggccgcacgccgagccacttgatatccggcgttgtcagattggcactgtcatacg 488
            | ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 1087 cgcttggccgcaccccgggccacttgatatccggtgttgtcaggttggcactgtcatatg 1028

                                        
Query: 489  acatgttcttcgagccacacatatacac 516
            |||||||||| || |||||||| |||||
Sbjct: 1027 acatgttcttggaaccacacatgtacac 1000
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  365 bits (184), Expect = 1e-97
 Identities = 292/328 (89%)
 Strand = Plus / Minus

                                                                           
Query: 189     aaatccagtcctcctgctgcagcttgaggggtagatatacctcagtcaggtactggaacc 248
               ||||||||||||  |||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct: 9768784 aaatccagtcctgttgctgcagcttgagaggtagatagacctcagtgagatactggaaac 9768725

                                                                           
Query: 249     caaacgagctgagagcctgaatctcagccttctgttttgttcgcaacatcgtctccaact 308
               |||| || ||||||||||| ||||||||||||||  | || |||||||||||||||| ||
Sbjct: 9768724 caaatgaactgagagcctgtatctcagccttctgcctcgtccgcaacatcgtctccagct 9768665

                                                                           
Query: 309     ccttcacccacccttcattttgcttcacgaagtcttcctctagcatctcttttcccacct 368
               |||||||||| |||||||| |||||||| ||||| ||||| |||| ||| || |||||||
Sbjct: 9768664 ccttcacccatccttcattctgcttcacaaagtcctcctcaagcagctccttccccacct 9768605

                                                                           
Query: 369     tgatatcgtgatcactcatgggaagccggcactgctccggtaccctgtacttgtccagat 428
               |||||||||||||| |||| |||||||||||||||||||| ||||  |||||||||||||
Sbjct: 9768604 tgatatcgtgatcagtcatcggaagccggcactgctccggcacccgatacttgtccagat 9768545

                                                                           
Query: 429     cacttggccgcacgccgagccacttgatatccggcgttgtcagattggcactgtcatacg 488
               | ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 9768544 cgcttggccgcactccgagccacttgatatccggtgttgtcaggttggcactgtcatatg 9768485

                                           
Query: 489     acatgttcttcgagccacacatatacac 516
               |||||||||| || |||||||| |||||
Sbjct: 9768484 acatgttcttggaaccacacatgtacac 9768457
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>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02,
              complete sequence
          Length = 131883

 Score =  365 bits (184), Expect = 1e-97
 Identities = 292/328 (89%)
 Strand = Plus / Plus

                                                                          
Query: 189    aaatccagtcctcctgctgcagcttgaggggtagatatacctcagtcaggtactggaacc 248
              ||||||||||||  |||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct: 103834 aaatccagtcctgttgctgcagcttgagaggtagatagacctcagtgagatactggaaac 103893

                                                                          
Query: 249    caaacgagctgagagcctgaatctcagccttctgttttgttcgcaacatcgtctccaact 308
              |||| || ||||||||||| ||||||||||||||  | || |||||||||||||||| ||
Sbjct: 103894 caaatgaactgagagcctgtatctcagccttctgcctcgtccgcaacatcgtctccagct 103953

                                                                          
Query: 309    ccttcacccacccttcattttgcttcacgaagtcttcctctagcatctcttttcccacct 368
              |||||||||| |||||||| |||||||| ||||| ||||| |||| ||| || |||||||
Sbjct: 103954 ccttcacccatccttcattctgcttcacaaagtcctcctcaagcagctccttccccacct 104013

                                                                          
Query: 369    tgatatcgtgatcactcatgggaagccggcactgctccggtaccctgtacttgtccagat 428
              |||||||||||||| |||| |||||||||||||||||||| ||||  |||||||||||||
Sbjct: 104014 tgatatcgtgatcagtcatcggaagccggcactgctccggcacccgatacttgtccagat 104073

                                                                          
Query: 429    cacttggccgcacgccgagccacttgatatccggcgttgtcagattggcactgtcatacg 488
              | ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 104074 cgcttggccgcactccgagccacttgatatccggtgttgtcaggttggcactgtcatatg 104133

                                          
Query: 489    acatgttcttcgagccacacatatacac 516
              |||||||||| || |||||||| |||||
Sbjct: 104134 acatgttcttggaaccacacatgtacac 104161
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>dbj|AK073184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010B03, full
            insert sequence
          Length = 1884

 Score =  365 bits (184), Expect = 1e-97
 Identities = 292/328 (89%)
 Strand = Plus / Minus

                                                                        
Query: 189  aaatccagtcctcctgctgcagcttgaggggtagatatacctcagtcaggtactggaacc 248
            ||||||||||||  |||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct: 1442 aaatccagtcctgttgctgcagcttgagaggtagatagacctcagtgagatactggaaac 1383

                                                                        
Query: 249  caaacgagctgagagcctgaatctcagccttctgttttgttcgcaacatcgtctccaact 308
            |||| || ||||||||||| ||||||||||||||  | || |||||||||||||||| ||
Sbjct: 1382 caaatgaactgagagcctgtatctcagccttctgcctcgtccgcaacatcgtctccagct 1323

                                                                        
Query: 309  ccttcacccacccttcattttgcttcacgaagtcttcctctagcatctcttttcccacct 368
            |||||||||| |||||||| |||||||| ||||| ||||| |||| ||| || |||||||
Sbjct: 1322 ccttcacccatccttcattctgcttcacaaagtcctcctcaagcagctccttccccacct 1263

                                                                        
Query: 369  tgatatcgtgatcactcatgggaagccggcactgctccggtaccctgtacttgtccagat 428
            |||||||||||||| |||| |||||||||||||||||||| ||||  |||||||||||||
Sbjct: 1262 tgatatcgtgatcagtcatcggaagccggcactgctccggcacccgatacttgtccagat 1203

                                                                        
Query: 429  cacttggccgcacgccgagccacttgatatccggcgttgtcagattggcactgtcatacg 488
            | ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 1202 cgcttggccgcactccgagccacttgatatccggtgttgtcaggttggcactgtcatatg 1143

                                        
Query: 489  acatgttcttcgagccacacatatacac 516
            |||||||||| || |||||||| |||||
Sbjct: 1142 acatgttcttggaaccacacatgtacac 1115
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>gb|AY110995.1| Zea mays CL3138_1 mRNA sequence
          Length = 649

 Score =  287 bits (145), Expect = 2e-74
 Identities = 289/337 (85%)
 Strand = Plus / Plus

                                                                       
Query: 180 agagatcttaaatccagtcctcctgctgcagcttgaggggtagatatacctcagtcaggt 239
           |||| ||| ||||||| |||| || ||||| ||| || || || || ||||| || ||||
Sbjct: 270 agagttctcaaatccaatcctgctcctgcaacttaagaggcaggtagacctcggtgaggt 329

                                                                       
Query: 240 actggaacccaaacgagctgagagcctgaatctcagccttctgttttgttcgcaacatcg 299
           |||||||||| || || ||||| ||||| ||||||||||| || || || || | |||||
Sbjct: 330 actggaacccgaaggaactgagggcctgtatctcagccttttgcttggtgcgaagcatcg 389

                                                                       
Query: 300 tctccaactccttcacccacccttcattttgcttcacgaagtcttcctctagcatctctt 359
           |||||| |||||||||||| || ||||| |||||||||||||| ||||| |||| |||||
Sbjct: 390 tctccagctccttcacccagccctcattctgcttcacgaagtcctcctcgagcagctctt 449

                                                                       
Query: 360 ttcccaccttgatatcgtgatcactcatgggaagccggcactgctccggtaccctgtact 419
           | ||||||||||||||||||||  ||||||| || |||||||||||||| || |||||||
Sbjct: 450 tccccaccttgatatcgtgatcggtcatggggagacggcactgctccggcactctgtact 509

                                                                       
Query: 420 tgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattggcac 479
           ||||||| || || ||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct: 510 tgtccaggtcgctcggccggacaccgagccacttgatgtccggcgtcgtcagattggcac 569

                                                
Query: 480 tgtcatacgacatgttcttcgagccacacatatacac 516
           ||||||||||||||||||| || |||||||| |||||
Sbjct: 570 tgtcatacgacatgttcttggaaccacacatgtacac 606
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>ref|NM_120360.2| Arabidopsis thaliana RHL2 (ROOT HAIRLESS 2); ATP binding / DNA
            binding / DNA topoisomerase (ATP-hydrolyzing) AT5G02820
            (RHL2) mRNA, complete cds
          Length = 2010

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 416  tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
            |||||||||| |||||| ||||  |  || |||||||| ||||| ||||| ||||  || 
Sbjct: 1155 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggcgtagtcaagttt 1096

                                            
Query: 476  gcactgtcatacgacatgttcttcgagccaca 507
            ||||| ||||| |||||||||||||| |||||
Sbjct: 1095 gcactatcatatgacatgttcttcgacccaca 1064



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 1332 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 1292
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>ref|NM_120361.2| Arabidopsis thaliana unknown protein AT5G02830 mRNA, complete cds
          Length = 3438

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                        
Query: 416  tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
            |||||||||| |||||| ||||  |  || |||||||| ||||| ||||| ||||  || 
Sbjct: 3155 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggcgtagtcaagttt 3214

                                            
Query: 476  gcactgtcatacgacatgttcttcgagccaca 507
            ||||| ||||| |||||||||||||| |||||
Sbjct: 3215 gcactatcatatgacatgttcttcgacccaca 3246



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 2978 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 3018
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>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project)
          Length = 104769

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                         
Query: 416   tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
             |||||||||| |||||| ||||  |  || |||||||| ||||| ||||| ||||  || 
Sbjct: 39370 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggcgtagtcaagttt 39311

                                             
Query: 476   gcactgtcatacgacatgttcttcgagccaca 507
             ||||| ||||| |||||||||||||| |||||
Sbjct: 39310 gcactatcatatgacatgttcttcgacccaca 39279



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 239   tactggaacccaaacgagctgagagcctgaatctcagcctt 279
             |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 39547 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 39507
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>emb|AJ297842.1|ATH297842 Arabidopsis thaliana mRNA for topoisomerase 6 subunit A (spo11 gene)
          Length = 1655

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 416  tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
            |||||||||| |||||| ||||  |  || |||||||| ||||| ||||| ||||  || 
Sbjct: 1155 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggcgtagtcaagttt 1096

                                            
Query: 476  gcactgtcatacgacatgttcttcgagccaca 507
            ||||| ||||| |||||||||||||| |||||
Sbjct: 1095 gcactatcatatgacatgttcttcgacccaca 1064



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 1332 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 1292
to top
>emb|BX830246.1|CNS0A077 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB68ZF12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1436

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 416  tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
            |||||||||| |||||| ||||  |  || |||||||| ||||| ||||| ||||  || 
Sbjct: 1097 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggcgtagtcaagttt 1038

                                            
Query: 476  gcactgtcatacgacatgttcttcgagccaca 507
            ||||| ||||| |||||||||||||| |||||
Sbjct: 1037 gcactatcatatgacatgttcttcgacccaca 1006



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 1274 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 1234
to top
>emb|BX830004.1|CNS0A076 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB52ZE09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1485

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 416  tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
            |||||||||| |||||| ||||  |  || |||||||| ||||| ||||| ||||  || 
Sbjct: 1096 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggcgtagtcaagttt 1037

                                            
Query: 476  gcactgtcatacgacatgttcttcgagccaca 507
            ||||| ||||| |||||||||||||| |||||
Sbjct: 1036 gcactatcatatgacatgttcttcgacccaca 1005



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 1273 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 1233
to top
>emb|BX832591.1|CNS09ZUI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH82ZG04 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1418

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 416  tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
            |||||||||| |||||| ||||  |  || |||||||| ||||| ||||| ||||  || 
Sbjct: 1128 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggcgtagtcaagttt 1069

                                            
Query: 476  gcactgtcatacgacatgttcttcgagccaca 507
            ||||| ||||| |||||||||||||| |||||
Sbjct: 1068 gcactatcatatgacatgttcttcgacccaca 1037



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 1305 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 1265
to top
>gb|AC131532.7| Homo sapiens 12 BAC RP11-408B11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 85167

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 29    ttcaaatacataaaacatacaaa 51
             |||||||||||||||||||||||
Sbjct: 54403 ttcaaatacataaaacatacaaa 54425
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>gb|AC105395.1| Homo sapiens chromosome 4 clone RP11-397A19, complete sequence
          Length = 162281

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 159    tctgcagctgctgtcatcagaa 180
              ||||||||||||||||||||||
Sbjct: 147570 tctgcagctgctgtcatcagaa 147549
to top
>emb|AL033403.1|HS88D7 Human DNA sequence from clone RP6-88D7 on chromosome Xq25-26.3 Contains
              the F9 gene for F9: coagulation factor IX (plasma
              thromboplastic component, Christmas disease, hemophilia B)
              (FIX, PTC, HEMB) and the 3' end of the  MCF2 gene for MCF.2
              cell line derived transforming sequence (DBL), complete
              sequence
          Length = 158557

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 29     ttcaaatacataaaacataca 49
              |||||||||||||||||||||
Sbjct: 105303 ttcaaatacataaaacataca 105323
to top
>gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 208686

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 157    catctgcagctgctgtcatcagaag 181
              ||||||||||||||| |||||||||
Sbjct: 161900 catctgcagctgctgccatcagaag 161876
to top
>gb|AF323679.1|AF323679 Arabidopsis thaliana putative topoisomerase VI subunit A (SPO11-3)
            mRNA, complete cds
          Length = 1373

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 1276 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 1236



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                        
Query: 416  tacttgtccagatcacttggccgcacgccgagccacttgatatccggcgttgtcagattg 475
            |||||||||| |||||| ||||  |  || |||||||| ||||| || || ||||  || 
Sbjct: 1099 tacttgtccaaatcactcggcctaattccaagccacttaatatcaggtgtagtcaagttt 1040

                                            
Query: 476  gcactgtcatacgacatgttcttcgagccaca 507
            ||||| ||||| ||||||||||| || |||||
Sbjct: 1039 gcactatcataagacatgttctttgacccaca 1008
to top
>emb|BX831096.1|CNS09ZI6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS57ZE07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1593

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 239  tactggaacccaaacgagctgagagcctgaatctcagcctt 279
            |||||||| ||||| ||||| |  |||||||||||||||||
Sbjct: 1308 tactggaaaccaaaagagctcaacgcctgaatctcagcctt 1268
to top
>gb|AC004813.2|AC004813 Homo sapiens clone 277F10, complete sequence
          Length = 108969

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 157   catctgcagctgctgtcatcagaag 181
             ||||||||||||||| |||||||||
Sbjct: 14247 catctgcagctgctgccatcagaag 14223
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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   gcagctgctgtcatcagaag 181
             ||||||||||||||||||||
Sbjct: 57829 gcagctgctgtcatcagaag 57810
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>gb|AC151968.3| Mus musculus BAC clone RP24-247B20 from chromosome 9, complete
            sequence
          Length = 191668

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 346  ctctagcatctcttttcccacctt 369
            ||||||| ||||||||||||||||
Sbjct: 8450 ctctagcttctcttttcccacctt 8427
to top
>gb|AY738117.1| Homo sapiens matrix metalloproteinase 2 (gelatinase A, 72kDa
            gelatinase, 72kDa type IV collagenase) (MMP2) gene,
            complete cds
          Length = 31017

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   aaacatacaaagggattgcc 60
            ||||||||||||||||||||
Sbjct: 2027 aaacatacaaagggattgcc 2046
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>ref|NM_004530.2| Homo sapiens matrix metallopeptidase 2 (gelatinase A, 72kDa
          gelatinase, 72kDa type IV collagenase) (MMP2), mRNA
          Length = 3546

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 aaacatacaaagggattgcc 60
          ||||||||||||||||||||
Sbjct: 76 aaacatacaaagggattgcc 95
to top
>gb|AC005158.3| Homo sapiens BAC clone GS1-250N6 from 7, complete sequence
          Length = 266344

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   catcagaagagatcttaaat 192
             ||||||||||||||||||||
Sbjct: 11125 catcagaagagatcttaaat 11144
to top
>emb|Z79605.1|CEZK678 Caenorhabditis elegans Cosmid ZK678, complete sequence
          Length = 35126

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    ggattgccgcacagatgtta 72
             ||||||||||||||||||||
Sbjct: 31655 ggattgccgcacagatgtta 31636
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>gb|AC124698.4| Mus musculus BAC clone RP24-180F7 from chromosome 3, complete sequence
          Length = 164187

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ctccaactccttcacccacc 320
             ||||||||||||||||||||
Sbjct: 57540 ctccaactccttcacccacc 57559
to top
>gb|BC002576.2| Homo sapiens matrix metallopeptidase 2 (gelatinase A, 72kDa
          gelatinase, 72kDa type IV collagenase), mRNA (cDNA
          clone MGC:2313 IMAGE:3161383), complete cds
          Length = 3065

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 aaacatacaaagggattgcc 60
          ||||||||||||||||||||
Sbjct: 38 aaacatacaaagggattgcc 57
to top
>gb|AC100801.4| Homo sapiens chromosome 8, clone CTA-392E5, complete sequence
          Length = 111708

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 304   caactccttcacccacccttcatt 327
             |||||||||| |||||||||||||
Sbjct: 47252 caactccttctcccacccttcatt 47275
to top
>emb|AL121800.1|DMBN5I9 Drosophila melanogaster BAC clone BACN5I9
          Length = 96433

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaatacataaaacatacaaa 51
             ||||||||||||||||||||
Sbjct: 35320 aaatacataaaacatacaaa 35339
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>gb|AC162922.4| Mus musculus BAC clone RP23-314M6 from chromosome 3, complete sequence
          Length = 245207

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ctccaactccttcacccacc 320
             ||||||||||||||||||||
Sbjct: 31183 ctccaactccttcacccacc 31202
to top
>emb|AL662921.10| Mouse DNA sequence from clone RP23-397K10 on chromosome 11 Contains a CpG
              island, complete sequence
          Length = 141754

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     ttttcaaatacataaaacat 46
              ||||||||||||||||||||
Sbjct: 100576 ttttcaaatacataaaacat 100557
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>emb|CR854930.5| Zebrafish DNA sequence from clone CH211-268F11 in linkage group 13,
             complete sequence
          Length = 92936

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   cttctgttttgttcgcaaca 296
             ||||||||||||||||||||
Sbjct: 79692 cttctgttttgttcgcaaca 79673
to top
>gb|AC105351.2| Drosophila melanogaster X BAC RP98-34B12 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179795

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaatacataaaacatacaaa 51
             ||||||||||||||||||||
Sbjct: 11786 aaatacataaaacatacaaa 11805
to top
>gb|AC092352.2| Homo sapiens chromosome 16 clone RP11-2M17, complete sequence
          Length = 176117

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    aaacatacaaagggattgcc 60
             ||||||||||||||||||||
Sbjct: 57165 aaacatacaaagggattgcc 57146
to top
>gb|AC161470.3| Gallus gallus BAC clone CH261-85J8 from chromosome ul, complete
             sequence
          Length = 213142

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   tcttcctctagcatctcttt 360
             ||||||||||||||||||||
Sbjct: 79959 tcttcctctagcatctcttt 79978
to top
>gb|AF104858.1|CEPRP1P1 Caenorhabditis elegans putative RNA-binding protein PRP-1 (prp-1)
           mRNA, partial cds
          Length = 1171

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  caacatacggtttttcaaat 35
           ||||||||||||||||||||
Sbjct: 467 caacatacggtttttcaaat 448
to top
>ref|NM_058326.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein
           family member (pqn-59) (pqn-59) mRNA, complete cds
          Length = 3001

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  caacatacggtttttcaaat 35
           ||||||||||||||||||||
Sbjct: 467 caacatacggtttttcaaat 448
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 162     gcagctgctgtcatcagaag 181
               ||||||||||||||||||||
Sbjct: 3463874 gcagctgctgtcatcagaag 3463855
to top
>gb|AC154745.3| Mus musculus BAC clone RP24-395F6 from chromosome 13, complete sequence
          Length = 144172

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    aaatacataaaacatacaaaggga 55
             ||||||||||| ||||||||||||
Sbjct: 88312 aaatacataaaccatacaaaggga 88335
to top
>gb|AC007336.6| Homo sapiens chromosome 16 clone RP11-212I21, complete sequence
          Length = 193963

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aaacatacaaagggattgcc 60
             ||||||||||||||||||||
Sbjct: 94705 aaacatacaaagggattgcc 94724
to top
>gb|AF206725.6| Homo sapiens chromosome 8 clone CTA-392E5 map q21-q23, complete
             sequence
          Length = 111702

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 304   caactccttcacccacccttcatt 327
             |||||||||| |||||||||||||
Sbjct: 64452 caactccttctcccacccttcatt 64429
to top
>gb|AY167088.1| Microcebus griseorufus clone YLE362 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167087.1| Microcebus griseorufus clone YLE361 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167086.1| Microcebus griseorufus clone YLE360 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167085.1| Microcebus griseorufus clone YLE359 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167084.1| Microcebus griseorufus clone YLE358 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167082.1| Microcebus griseorufus clone YLE356 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167081.1| Microcebus griseorufus clone YLE355 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167080.1| Microcebus griseorufus clone YLE354 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167079.1| Microcebus griseorufus clone YLE353 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167078.1| Microcebus griseorufus clone YLE352 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>gb|AY167077.1| Microcebus griseorufus clone YLE351 mitochondrial D-loop, partial
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  caaatacataaaacatacaa 50
           ||||||||||||||||||||
Sbjct: 242 caaatacataaaacatacaa 261
to top
>ref|XM_308180.2| Anopheles gambiae str. PEST ENSANGP00000021521
           (ENSANGG00000019032), partial mRNA
          Length = 1652

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 ctgtatcatctgcagctgct 170
           ||||||||||||||||||||
Sbjct: 992 ctgtatcatctgcagctgct 973
to top
>emb|AJ298926.1|HSA298926 Homo sapiens partial MMP2 gene for metalloproteinase 2, promoter
            region
          Length = 2180

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   aaacatacaaagggattgcc 60
            ||||||||||||||||||||
Sbjct: 1952 aaacatacaaagggattgcc 1971
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>gb|AF063007.3| Caenorhabditis elegans cosmid R119, complete sequence
          Length = 38976

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    caacatacggtttttcaaat 35
             ||||||||||||||||||||
Sbjct: 23865 caacatacggtttttcaaat 23884
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>gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 of 74 of the complete
             sequence
          Length = 213230

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aaatacataaaacatacaaa 51
             ||||||||||||||||||||
Sbjct: 21890 aaatacataaaacatacaaa 21871
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>dbj|AP000442.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60A24, complete
             sequence
          Length = 117502

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   gtatcatctgcagctgctgtcatc 176
             |||||||||||||||||| |||||
Sbjct: 40864 gtatcatctgcagctgctttcatc 40841
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>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete
              sequence
          Length = 212007

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    gcagctgctgtcatcagaag 181
              ||||||||||||||||||||
Sbjct: 149458 gcagctgctgtcatcagaag 149439
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 162     gcagctgctgtcatcagaag 181
               ||||||||||||||||||||
Sbjct: 3472578 gcagctgctgtcatcagaag 3472559
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>emb|AL831741.16| Mouse DNA sequence from clone RP23-337N2 on chromosome 4, complete
              sequence
          Length = 213347

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    tccagtcctcctgctgcagc 211
              ||||||||||||||||||||
Sbjct: 197878 tccagtcctcctgctgcagc 197897
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>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete
             sequence
          Length = 196737

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    aaatacataaaacatacaaaggga 55
             ||||||||||| ||||||||||||
Sbjct: 98161 aaatacataaaccatacaaaggga 98184
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>gb|M58552.1|HUMCLG4Q01 Human collagenase type IV (CLG4) gene, exon 1
          Length = 868

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  aaacatacaaagggattgcc 60
           ||||||||||||||||||||
Sbjct: 477 aaacatacaaagggattgcc 496
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>gb|M33789.1|HUMCLG4 Human type-4 collagenase (CLG4) preproenzyme gene, exon 1
          Length = 451

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 aaacatacaaagggattgcc 60
          ||||||||||||||||||||
Sbjct: 62 aaacatacaaagggattgcc 81
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>emb|X58968.1|HSTYPIVCL H.sapiens RNA for 5` sequence of type IV collagenase
          Length = 400

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 aaacatacaaagggattgcc 60
          ||||||||||||||||||||
Sbjct: 72 aaacatacaaagggattgcc 91


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,928,193
Number of Sequences: 3902068
Number of extensions: 4928193
Number of successful extensions: 94172
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93965
Number of HSP's gapped (non-prelim): 207
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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