ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY109595.1| Zea mays CL222_1 mRNA sequence 88 4e-14
2ref|XM_470554.1| Oryza sativa (japonica cultivar-group), predic... 74 7e-10
3dbj|AK100037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.037
5gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 48 0.037
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
7gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, co... 46 0.15
8gb|AC114404.12| Mus musculus chromosome 7, clone RP24-350D24, co... 46 0.15
9gb|AY112497.1| Zea mays CL422_1 mRNA sequence 46 0.15
10ref|NM_017514.2| Homo sapiens plexin A3 (PLXNA3), mRNA 44 0.59
11emb|BX936365.3| Human DNA sequence from clone WI2-81657B9 on chr... 44 0.59
12emb|X87852.1|HSSEXGENE H.sapiens mRNA for SEX gene 44 0.59
13gb|L44140.1|HUMFLNG6PD Homo sapiens chromosome X region from fil... 44 0.59
14dbj|AK091340.1| Homo sapiens cDNA FLJ34021 fis, clone FCBBF2002928 42 2.3
15tpg|BK001426.1| TPA: TPA_exp: Homo sapiens selenoprotein I mRNA,... 42 2.3
16ref|NM_033505.1| Homo sapiens selenoprotein I (SELI), mRNA 42 2.3
17gb|AC010896.15| Homo sapiens BAC clone RP11-499P9 from 2, comple... 42 2.3
18dbj|AB051511.1| Homo sapiens mRNA for KIAA1724 protein, partial cds 42 2.3
19gb|AC132875.8| Mus musculus chromosome 15, clone RP24-381O23, co... 40 9.1
20ref|XM_419464.1| PREDICTED: Gallus gallus similar to Protein kin... 40 9.1
21gb|AC115236.4| Rattus norvegicus 15 BAC CH230-87I6 (Children's H... 40 9.1
22gb|AC139341.3| Atelerix albiventris clone LB4-464N6, complete se... 40 9.1
23emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, co... 40 9.1
24gb|AC004125.1|HUAC004125 Homo sapiens Chromosome 16 BAC clone CI... 40 9.1
25emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L... 40 9.1
26emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23... 40 9.1
27gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 9.1
28emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, ... 40 9.1
29dbj|AB190354.1| Brassica rapa BrSRK-f2, BrSP11-f2 genes, complet... 40 9.1
30gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, comp... 40 9.1
31gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence 40 9.1
32gb|AC027013.7| Homo sapiens chromosome 15, clone RP11-398J10, co... 40 9.1
33gb|AC090371.4| Homo sapiens chromosome 18, clone RP11-746B8, com... 40 9.1
34gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 9.1
35gb|DP000004.1| Lemur catta target 1 genomic scaffold 40 9.1
36gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 40 9.1
37gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, comp... 40 9.1
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
39gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold 40 9.1
40gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cance... 40 9.1
41gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence 40 9.1
42dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 9.1
43dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
44emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in ... 40 9.1
45gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, c... 40 9.1
46emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chr... 40 9.1
47dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 9.1

>gb|AY109595.1| Zea mays CL222_1 mRNA sequence
          Length = 1600

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 109/131 (83%), Gaps = 6/131 (4%)
 Strand = Plus / Minus

                                                                        
Query: 486  caaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgcgagtct 545
            ||||||||||||||||  || ||||| || ||||| |||||||||||||| ||   ||||
Sbjct: 1275 caaagcatgcctccatccgcgacccagtgcgcaaaccggtcagaatagtcccgaacgtct 1216

                                                                        
Query: 546  gagagctggctgcttgagcggga------caggtcatcccttccctcatcattgtgtcct 599
            |||| |||||||||||| |||||      || ||||||||||||||||||| ||||||||
Sbjct: 1215 gagacctggctgcttgaacgggaaagatccatgtcatcccttccctcatcagtgtgtcct 1156

                       
Query: 600  ggctcactgta 610
             | ||||||||
Sbjct: 1155 tgttcactgta 1145



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>ref|XM_470554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2340

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 156/196 (79%), Gaps = 6/196 (3%)
 Strand = Plus / Minus

                                                                        
Query: 480  tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539
            ||||||||||||||||||||   | ||||||| || |  ||||||||||| ||||| || 
Sbjct: 2339 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 2280

                                                                        
Query: 540  gagtctgagagctggctgcttgagcgggacag------gtcatcccttccctcatcattg 593
              |||||| |  |||||||||||||| |||||      |||||| |||||||||||||||
Sbjct: 2279 atgtctgacatttggctgcttgagcgtgacagatctgtgtcatctcttccctcatcattg 2220

                                                                        
Query: 594  tgtcctggctcactgtaagtagtagtagatccaacactgataccatccaatggtgagtga 653
            |||||  | |||||||| |  ||||| ||| ||| ||||| | ||||||  ||||| |  
Sbjct: 2219 tgtccctgttcactgtatgatgtagttgattcaatactgacaacatccatgggtgaattg 2160

                            
Query: 654  atgagtgatgacctct 669
            ||||||||||||||||
Sbjct: 2159 atgagtgatgacctct 2144



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>dbj|AK100037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A15, full
            insert sequence
          Length = 3741

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 156/199 (78%), Gaps = 9/199 (4%)
 Strand = Plus / Minus

                                                                        
Query: 480  tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539
            ||||||||||||||||||||   | ||||||| || |  ||||||||||| ||||| || 
Sbjct: 2918 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 2859

                                                                        
Query: 540  gagtctgagagctggctgcttgagcgggacag------gtcatcccttcc---ctcatca 590
              |||||| |  |||||||||||||| |||||      |||||| |||||   |||||||
Sbjct: 2858 atgtctgacatttggctgcttgagcgtgacagatctgtgtcatctcttccctgctcatca 2799

                                                                        
Query: 591  ttgtgtcctggctcactgtaagtagtagtagatccaacactgataccatccaatggtgag 650
            ||||||||  | |||||||| |  ||||| ||| ||| ||||| | ||||||  ||||| 
Sbjct: 2798 ttgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatccatgggtgaa 2739

                               
Query: 651  tgaatgagtgatgacctct 669
            |  ||||||||||||||||
Sbjct: 2738 ttgatgagtgatgacctct 2720



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                           
Query: 480     tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539
               ||||||||||||||||||||   | ||||||| || |  ||||||||||| ||||| || 
Sbjct: 4317074 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 4317015

                                               
Query: 540     gagtctgagagctggctgcttgagcgggacag 571
                 |||||| |  |||||||||||||| |||||
Sbjct: 4317014 atgtctgacatttggctgcttgagcgtgacag 4316983



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                           
Query: 583     cctcatcattgtgtcctggctcactgtaagtagtagtagatccaacactgataccatcca 642
               ||||||||||||||||  | |||||||| |  ||||| ||| ||| ||||| | ||||||
Sbjct: 4316416 cctcatcattgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatcca 4316357

                                        
Query: 643     atggtgagtgaatgagtgatgacct 667
                 ||||| |  ||||||||||||||
Sbjct: 4316356 tgggtgaattgatgagtgatgacct 4316332



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>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                          
Query: 480    tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539
              ||||||||||||||||||||   | ||||||| || |  ||||||||||| ||||| || 
Sbjct: 109423 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 109482

                                              
Query: 540    gagtctgagagctggctgcttgagcgggacag 571
                |||||| |  |||||||||||||| |||||
Sbjct: 109483 atgtctgacatttggctgcttgagcgtgacag 109514



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Plus

                                                                          
Query: 583    cctcatcattgtgtcctggctcactgtaagtagtagtagatccaacactgataccatcca 642
              ||||||||||||||||  | |||||||| |  ||||| ||| ||| ||||| | ||||||
Sbjct: 110081 cctcatcattgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatcca 110140

                                       
Query: 643    atggtgagtgaatgagtgatgacct 667
                ||||| |  ||||||||||||||
Sbjct: 110141 tgggtgaattgatgagtgatgacct 110165



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                           
Query: 480     tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539
               ||||||||||||||||||||   | ||||||| || |  ||||||||||| ||||| || 
Sbjct: 4317189 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 4317130

                                               
Query: 540     gagtctgagagctggctgcttgagcgggacag 571
                 |||||| |  |||||||||||||| |||||
Sbjct: 4317129 atgtctgacatttggctgcttgagcgtgacag 4317098



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                           
Query: 583     cctcatcattgtgtcctggctcactgtaagtagtagtagatccaacactgataccatcca 642
               ||||||||||||||||  | |||||||| |  ||||| ||| ||| ||||| | ||||||
Sbjct: 4316531 cctcatcattgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatcca 4316472

                                        
Query: 643     atggtgagtgaatgagtgatgacct 667
                 ||||| |  ||||||||||||||
Sbjct: 4316471 tgggtgaattgatgagtgatgacct 4316447



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>gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, complete sequence
          Length = 230772

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 448    tggagatgccaccaggacaaatt 470
              |||||||||||||||||||||||
Sbjct: 188892 tggagatgccaccaggacaaatt 188914



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>gb|AC114404.12| Mus musculus chromosome 7, clone RP24-350D24, complete sequence
          Length = 188585

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 448   tggagatgccaccaggacaaatt 470
             |||||||||||||||||||||||
Sbjct: 17060 tggagatgccaccaggacaaatt 17082



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>gb|AY112497.1| Zea mays CL422_1 mRNA sequence
          Length = 801

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 572 gtcatcccttccctcatcattgtgtcctggctcactgta 610
           ||||||||||||||||||| | || ||| ||||||||||
Sbjct: 173 gtcatcccttccctcatcagtatgcccttgctcactgta 135



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>ref|NM_017514.2| Homo sapiens plexin A3 (PLXNA3), mRNA
          Length = 6762

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 365  gcactgtgcggctgcagcttct 386
            ||||||||||||||||||||||
Sbjct: 2010 gcactgtgcggctgcagcttct 2031



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>emb|BX936365.3| Human DNA sequence from clone WI2-81657B9 on chromosome X Contains the
             3' end of the GDI1 gene for GDP dissociation inhibitor 1,
             the FAM50A gene for family with sequence similarity 50,
             member A, a novel gene (DXS9879E) gene , the PLXNA3 gene
             for plexin A3 and a CpG island, complete sequence
          Length = 39835

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 365   gcactgtgcggctgcagcttct 386
             ||||||||||||||||||||||
Sbjct: 22403 gcactgtgcggctgcagcttct 22424



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>emb|X87852.1|HSSEXGENE H.sapiens mRNA for SEX gene
          Length = 6039

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 365  gcactgtgcggctgcagcttct 386
            ||||||||||||||||||||||
Sbjct: 2022 gcactgtgcggctgcagcttct 2043



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>gb|L44140.1|HUMFLNG6PD Homo sapiens chromosome X region from filamin (FLN) gene to
              glucose-6-phosphate dehydrogenase (G6PD) gene, complete
              cds's
          Length = 219447

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 365    gcactgtgcggctgcagcttct 386
              ||||||||||||||||||||||
Sbjct: 134840 gcactgtgcggctgcagcttct 134861



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>dbj|AK091340.1| Homo sapiens cDNA FLJ34021 fis, clone FCBBF2002928
          Length = 2434

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  atcattcattgcctttccctt 194
            |||||||||||||||||||||
Sbjct: 1251 atcattcattgcctttccctt 1231



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>tpg|BK001426.1| TPA: TPA_exp: Homo sapiens selenoprotein I mRNA, complete cds
          Length = 8084

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  atcattcattgcctttccctt 194
            |||||||||||||||||||||
Sbjct: 6899 atcattcattgcctttccctt 6879



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>ref|NM_033505.1| Homo sapiens selenoprotein I (SELI), mRNA
          Length = 8091

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  atcattcattgcctttccctt 194
            |||||||||||||||||||||
Sbjct: 6908 atcattcattgcctttccctt 6888



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>gb|AC010896.15| Homo sapiens BAC clone RP11-499P9 from 2, complete sequence
          Length = 188780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    atcattcattgcctttccctt 194
              |||||||||||||||||||||
Sbjct: 165039 atcattcattgcctttccctt 165019



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>dbj|AB051511.1| Homo sapiens mRNA for KIAA1724 protein, partial cds
          Length = 8082

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  atcattcattgcctttccctt 194
            |||||||||||||||||||||
Sbjct: 6899 atcattcattgcctttccctt 6879



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>gb|AC132875.8| Mus musculus chromosome 15, clone RP24-381O23, complete sequence
          Length = 185786

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tatttatctgtaccatatat 35
              ||||||||||||||||||||
Sbjct: 152236 tatttatctgtaccatatat 152255



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>ref|XM_419464.1| PREDICTED: Gallus gallus similar to Protein kinase C, epsilon type
            (nPKC-epsilon) (LOC421409), mRNA
          Length = 2909

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  ttgattttcctttgttctag 414
            ||||||||||||||||||||
Sbjct: 2399 ttgattttcctttgttctag 2380



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>gb|AC115236.4| Rattus norvegicus 15 BAC CH230-87I6 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 151341

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   gcctatcattcattgccttt 189
             ||||||||||||||||||||
Sbjct: 49158 gcctatcattcattgccttt 49139



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>gb|AC139341.3| Atelerix albiventris clone LB4-464N6, complete sequence
          Length = 195266

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   tgtgtcctggctcactgtaa 611
             ||||||||||||||||||||
Sbjct: 84928 tgtgtcctggctcactgtaa 84947



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>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence
          Length = 205764

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   aatggtgagtgaatgagtga 661
             ||||||||||||||||||||
Sbjct: 14070 aatggtgagtgaatgagtga 14089



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>gb|AC004125.1|HUAC004125 Homo sapiens Chromosome 16 BAC clone CIT987SK-625P11, complete sequence
          Length = 194020

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 467    aattctttagcattagtagcaaag 490
              ||||||||| ||||||||||||||
Sbjct: 115886 aattctttaccattagtagcaaag 115863



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>emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L9 on chromosome 22, complete
             sequence
          Length = 146438

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   agctaacccttgaaaaagaa 148
             ||||||||||||||||||||
Sbjct: 25950 agctaacccttgaaaaagaa 25969



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>emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23 on chromosome Xq13.1-21.1
             Contains the TBX22 gene for T-box 22, complete sequence
          Length = 132029

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   aatggtgagtgaatgagtga 661
             ||||||||||||||||||||
Sbjct: 18964 aatggtgagtgaatgagtga 18983



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 422     gcctttgtgctgcggcgaaa 441
               ||||||||||||||||||||
Sbjct: 3928452 gcctttgtgctgcggcgaaa 3928471



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>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69
          Length = 197655

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 161   atttcctttgcctatcattcattg 184
             ||||||||| ||||||||||||||
Sbjct: 77099 atttccttttcctatcattcattg 77076



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>dbj|AB190354.1| Brassica rapa BrSRK-f2, BrSP11-f2 genes, complete cds
          Length = 38542

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    taaaggtgaacaaaaacata 115
             ||||||||||||||||||||
Sbjct: 31588 taaaggtgaacaaaaacata 31607



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>gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, complete sequence
          Length = 171696

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    cagcactgtgcggctgcagc 382
              ||||||||||||||||||||
Sbjct: 159255 cagcactgtgcggctgcagc 159236



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>gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence
          Length = 180917

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    tattttgtttctaaaggtgaacaa 108
             |||||||||||| |||||||||||
Sbjct: 46272 tattttgtttctcaaggtgaacaa 46295



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>gb|AC027013.7| Homo sapiens chromosome 15, clone RP11-398J10, complete sequence
          Length = 196215

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     tattttgtttctaaaggtgaacaa 108
              |||||||||||| |||||||||||
Sbjct: 155426 tattttgtttctcaaggtgaacaa 155449



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>gb|AC090371.4| Homo sapiens chromosome 18, clone RP11-746B8, complete sequence
          Length = 173028

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   attgattttcctttgttcta 413
             ||||||||||||||||||||
Sbjct: 92960 attgattttcctttgttcta 92941



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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     gctgcagcttcttcttgaga 394
               ||||||||||||||||||||
Sbjct: 3062648 gctgcagcttcttcttgaga 3062667



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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ttttgtttctaaaggtgaac 106
              ||||||||||||||||||||
Sbjct: 405327 ttttgtttctaaaggtgaac 405308



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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 592     tgtgtcctggctcactgtaa 611
               ||||||||||||||||||||
Sbjct: 1220336 tgtgtcctggctcactgtaa 1220355



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>gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, complete sequence
          Length = 186185

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   tacctaagctaacccttgaa 142
             ||||||||||||||||||||
Sbjct: 89124 tacctaagctaacccttgaa 89105



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 12       aacatatttatctgtaccat 31
                ||||||||||||||||||||
Sbjct: 27888428 aacatatttatctgtaccat 27888409



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>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold
          Length = 1570569

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ttttgtttctaaaggtgaac 106
              ||||||||||||||||||||
Sbjct: 432591 ttttgtttctaaaggtgaac 432572



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>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 116556

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  tcctttgcctatcattcatt 183
            ||||||||||||||||||||
Sbjct: 7786 tcctttgcctatcattcatt 7805



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>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence
          Length = 183268

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ttttgtttctaaaggtgaac 106
              ||||||||||||||||||||
Sbjct: 139376 ttttgtttctaaaggtgaac 139357



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>dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19
          Length = 85020

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   attcttcttctgttgcttca 348
             ||||||||||||||||||||
Sbjct: 32980 attcttcttctgttgcttca 32961



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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aacatatttatctgtaccat 31
             ||||||||||||||||||||
Sbjct: 96506 aacatatttatctgtaccat 96487



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>emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20,
              complete sequence
          Length = 139851

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    caccatcatctgcattcatt 276
              ||||||||||||||||||||
Sbjct: 101880 caccatcatctgcattcatt 101861



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>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence
          Length = 215303

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   caaaaccaaaccacaagtca 258
             ||||||||||||||||||||
Sbjct: 54281 caaaaccaaaccacaagtca 54300



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>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete
             sequence
          Length = 190917

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   caaaaccaaaccacaagtca 258
             ||||||||||||||||||||
Sbjct: 82926 caaaaccaaaccacaagtca 82945



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>dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT20B10, TM0135,
             complete sequence
          Length = 96988

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   cagatagatatatttccttt 169
             ||||||||||||||||||||
Sbjct: 28014 cagatagatatatttccttt 28033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,409,150
Number of Sequences: 3902068
Number of extensions: 7409150
Number of successful extensions: 170200
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 169899
Number of HSP's gapped (non-prelim): 296
length of query: 669
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 646
effective length of database: 17,143,297,704
effective search space: 11074570316784
effective search space used: 11074570316784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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