Clone Name | rbasd17f16 |
---|---|
Clone Library Name | barley_pub |
>gb|AY109595.1| Zea mays CL222_1 mRNA sequence Length = 1600 Score = 87.7 bits (44), Expect = 4e-14 Identities = 109/131 (83%), Gaps = 6/131 (4%) Strand = Plus / Minus Query: 486 caaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgcgagtct 545 |||||||||||||||| || ||||| || ||||| |||||||||||||| || |||| Sbjct: 1275 caaagcatgcctccatccgcgacccagtgcgcaaaccggtcagaatagtcccgaacgtct 1216 Query: 546 gagagctggctgcttgagcggga------caggtcatcccttccctcatcattgtgtcct 599 |||| |||||||||||| ||||| || ||||||||||||||||||| |||||||| Sbjct: 1215 gagacctggctgcttgaacgggaaagatccatgtcatcccttccctcatcagtgtgtcct 1156 Query: 600 ggctcactgta 610 | |||||||| Sbjct: 1155 tgttcactgta 1145
>ref|XM_470554.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2340 Score = 73.8 bits (37), Expect = 7e-10 Identities = 156/196 (79%), Gaps = 6/196 (3%) Strand = Plus / Minus Query: 480 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 2339 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 2280 Query: 540 gagtctgagagctggctgcttgagcgggacag------gtcatcccttccctcatcattg 593 |||||| | |||||||||||||| ||||| |||||| ||||||||||||||| Sbjct: 2279 atgtctgacatttggctgcttgagcgtgacagatctgtgtcatctcttccctcatcattg 2220 Query: 594 tgtcctggctcactgtaagtagtagtagatccaacactgataccatccaatggtgagtga 653 ||||| | |||||||| | ||||| ||| ||| ||||| | |||||| ||||| | Sbjct: 2219 tgtccctgttcactgtatgatgtagttgattcaatactgacaacatccatgggtgaattg 2160 Query: 654 atgagtgatgacctct 669 |||||||||||||||| Sbjct: 2159 atgagtgatgacctct 2144
>dbj|AK100037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A15, full insert sequence Length = 3741 Score = 52.0 bits (26), Expect = 0.002 Identities = 156/199 (78%), Gaps = 9/199 (4%) Strand = Plus / Minus Query: 480 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 2918 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 2859 Query: 540 gagtctgagagctggctgcttgagcgggacag------gtcatcccttcc---ctcatca 590 |||||| | |||||||||||||| ||||| |||||| ||||| ||||||| Sbjct: 2858 atgtctgacatttggctgcttgagcgtgacagatctgtgtcatctcttccctgctcatca 2799 Query: 591 ttgtgtcctggctcactgtaagtagtagtagatccaacactgataccatccaatggtgag 650 |||||||| | |||||||| | ||||| ||| ||| ||||| | |||||| ||||| Sbjct: 2798 ttgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatccatgggtgaa 2739 Query: 651 tgaatgagtgatgacctct 669 | |||||||||||||||| Sbjct: 2738 ttgatgagtgatgacctct 2720
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.037 Identities = 75/92 (81%) Strand = Plus / Minus Query: 480 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 4317074 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 4317015 Query: 540 gagtctgagagctggctgcttgagcgggacag 571 |||||| | |||||||||||||| ||||| Sbjct: 4317014 atgtctgacatttggctgcttgagcgtgacag 4316983 Score = 42.1 bits (21), Expect = 2.3 Identities = 69/85 (81%) Strand = Plus / Minus Query: 583 cctcatcattgtgtcctggctcactgtaagtagtagtagatccaacactgataccatcca 642 |||||||||||||||| | |||||||| | ||||| ||| ||| ||||| | |||||| Sbjct: 4316416 cctcatcattgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatcca 4316357 Query: 643 atggtgagtgaatgagtgatgacct 667 ||||| | |||||||||||||| Sbjct: 4316356 tgggtgaattgatgagtgatgacct 4316332
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 48.1 bits (24), Expect = 0.037 Identities = 75/92 (81%) Strand = Plus / Plus Query: 480 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 109423 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 109482 Query: 540 gagtctgagagctggctgcttgagcgggacag 571 |||||| | |||||||||||||| ||||| Sbjct: 109483 atgtctgacatttggctgcttgagcgtgacag 109514 Score = 42.1 bits (21), Expect = 2.3 Identities = 69/85 (81%) Strand = Plus / Plus Query: 583 cctcatcattgtgtcctggctcactgtaagtagtagtagatccaacactgataccatcca 642 |||||||||||||||| | |||||||| | ||||| ||| ||| ||||| | |||||| Sbjct: 110081 cctcatcattgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatcca 110140 Query: 643 atggtgagtgaatgagtgatgacct 667 ||||| | |||||||||||||| Sbjct: 110141 tgggtgaattgatgagtgatgacct 110165
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.037 Identities = 75/92 (81%) Strand = Plus / Minus Query: 480 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 539 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 4317189 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 4317130 Query: 540 gagtctgagagctggctgcttgagcgggacag 571 |||||| | |||||||||||||| ||||| Sbjct: 4317129 atgtctgacatttggctgcttgagcgtgacag 4317098 Score = 42.1 bits (21), Expect = 2.3 Identities = 69/85 (81%) Strand = Plus / Minus Query: 583 cctcatcattgtgtcctggctcactgtaagtagtagtagatccaacactgataccatcca 642 |||||||||||||||| | |||||||| | ||||| ||| ||| ||||| | |||||| Sbjct: 4316531 cctcatcattgtgtccctgttcactgtatgatgtagttgattcaatactgacaacatcca 4316472 Query: 643 atggtgagtgaatgagtgatgacct 667 ||||| | |||||||||||||| Sbjct: 4316471 tgggtgaattgatgagtgatgacct 4316447
>gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, complete sequence Length = 230772 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 448 tggagatgccaccaggacaaatt 470 ||||||||||||||||||||||| Sbjct: 188892 tggagatgccaccaggacaaatt 188914
>gb|AC114404.12| Mus musculus chromosome 7, clone RP24-350D24, complete sequence Length = 188585 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 448 tggagatgccaccaggacaaatt 470 ||||||||||||||||||||||| Sbjct: 17060 tggagatgccaccaggacaaatt 17082
>gb|AY112497.1| Zea mays CL422_1 mRNA sequence Length = 801 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Minus Query: 572 gtcatcccttccctcatcattgtgtcctggctcactgta 610 ||||||||||||||||||| | || ||| |||||||||| Sbjct: 173 gtcatcccttccctcatcagtatgcccttgctcactgta 135
>ref|NM_017514.2| Homo sapiens plexin A3 (PLXNA3), mRNA Length = 6762 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 gcactgtgcggctgcagcttct 386 |||||||||||||||||||||| Sbjct: 2010 gcactgtgcggctgcagcttct 2031
>emb|BX936365.3| Human DNA sequence from clone WI2-81657B9 on chromosome X Contains the 3' end of the GDI1 gene for GDP dissociation inhibitor 1, the FAM50A gene for family with sequence similarity 50, member A, a novel gene (DXS9879E) gene , the PLXNA3 gene for plexin A3 and a CpG island, complete sequence Length = 39835 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 gcactgtgcggctgcagcttct 386 |||||||||||||||||||||| Sbjct: 22403 gcactgtgcggctgcagcttct 22424
>emb|X87852.1|HSSEXGENE H.sapiens mRNA for SEX gene Length = 6039 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 gcactgtgcggctgcagcttct 386 |||||||||||||||||||||| Sbjct: 2022 gcactgtgcggctgcagcttct 2043
>gb|L44140.1|HUMFLNG6PD Homo sapiens chromosome X region from filamin (FLN) gene to glucose-6-phosphate dehydrogenase (G6PD) gene, complete cds's Length = 219447 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 gcactgtgcggctgcagcttct 386 |||||||||||||||||||||| Sbjct: 134840 gcactgtgcggctgcagcttct 134861
>dbj|AK091340.1| Homo sapiens cDNA FLJ34021 fis, clone FCBBF2002928 Length = 2434 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 atcattcattgcctttccctt 194 ||||||||||||||||||||| Sbjct: 1251 atcattcattgcctttccctt 1231
>tpg|BK001426.1| TPA: TPA_exp: Homo sapiens selenoprotein I mRNA, complete cds Length = 8084 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 atcattcattgcctttccctt 194 ||||||||||||||||||||| Sbjct: 6899 atcattcattgcctttccctt 6879
>ref|NM_033505.1| Homo sapiens selenoprotein I (SELI), mRNA Length = 8091 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 atcattcattgcctttccctt 194 ||||||||||||||||||||| Sbjct: 6908 atcattcattgcctttccctt 6888
>gb|AC010896.15| Homo sapiens BAC clone RP11-499P9 from 2, complete sequence Length = 188780 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 atcattcattgcctttccctt 194 ||||||||||||||||||||| Sbjct: 165039 atcattcattgcctttccctt 165019
>dbj|AB051511.1| Homo sapiens mRNA for KIAA1724 protein, partial cds Length = 8082 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 atcattcattgcctttccctt 194 ||||||||||||||||||||| Sbjct: 6899 atcattcattgcctttccctt 6879
>gb|AC132875.8| Mus musculus chromosome 15, clone RP24-381O23, complete sequence Length = 185786 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tatttatctgtaccatatat 35 |||||||||||||||||||| Sbjct: 152236 tatttatctgtaccatatat 152255
>ref|XM_419464.1| PREDICTED: Gallus gallus similar to Protein kinase C, epsilon type (nPKC-epsilon) (LOC421409), mRNA Length = 2909 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ttgattttcctttgttctag 414 |||||||||||||||||||| Sbjct: 2399 ttgattttcctttgttctag 2380
>gb|AC115236.4| Rattus norvegicus 15 BAC CH230-87I6 (Children's Hospital Oakland Research Institute) complete sequence Length = 151341 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gcctatcattcattgccttt 189 |||||||||||||||||||| Sbjct: 49158 gcctatcattcattgccttt 49139
>gb|AC139341.3| Atelerix albiventris clone LB4-464N6, complete sequence Length = 195266 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 tgtgtcctggctcactgtaa 611 |||||||||||||||||||| Sbjct: 84928 tgtgtcctggctcactgtaa 84947
>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence Length = 205764 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 642 aatggtgagtgaatgagtga 661 |||||||||||||||||||| Sbjct: 14070 aatggtgagtgaatgagtga 14089
>gb|AC004125.1|HUAC004125 Homo sapiens Chromosome 16 BAC clone CIT987SK-625P11, complete sequence Length = 194020 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 aattctttagcattagtagcaaag 490 ||||||||| |||||||||||||| Sbjct: 115886 aattctttaccattagtagcaaag 115863
>emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L9 on chromosome 22, complete sequence Length = 146438 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctaacccttgaaaaagaa 148 |||||||||||||||||||| Sbjct: 25950 agctaacccttgaaaaagaa 25969
>emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23 on chromosome Xq13.1-21.1 Contains the TBX22 gene for T-box 22, complete sequence Length = 132029 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 642 aatggtgagtgaatgagtga 661 |||||||||||||||||||| Sbjct: 18964 aatggtgagtgaatgagtga 18983
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gcctttgtgctgcggcgaaa 441 |||||||||||||||||||| Sbjct: 3928452 gcctttgtgctgcggcgaaa 3928471
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 atttcctttgcctatcattcattg 184 ||||||||| |||||||||||||| Sbjct: 77099 atttccttttcctatcattcattg 77076
>dbj|AB190354.1| Brassica rapa BrSRK-f2, BrSP11-f2 genes, complete cds Length = 38542 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 taaaggtgaacaaaaacata 115 |||||||||||||||||||| Sbjct: 31588 taaaggtgaacaaaaacata 31607
>gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, complete sequence Length = 171696 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 cagcactgtgcggctgcagc 382 |||||||||||||||||||| Sbjct: 159255 cagcactgtgcggctgcagc 159236
>gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence Length = 180917 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tattttgtttctaaaggtgaacaa 108 |||||||||||| ||||||||||| Sbjct: 46272 tattttgtttctcaaggtgaacaa 46295
>gb|AC027013.7| Homo sapiens chromosome 15, clone RP11-398J10, complete sequence Length = 196215 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tattttgtttctaaaggtgaacaa 108 |||||||||||| ||||||||||| Sbjct: 155426 tattttgtttctcaaggtgaacaa 155449
>gb|AC090371.4| Homo sapiens chromosome 18, clone RP11-746B8, complete sequence Length = 173028 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 attgattttcctttgttcta 413 |||||||||||||||||||| Sbjct: 92960 attgattttcctttgttcta 92941
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gctgcagcttcttcttgaga 394 |||||||||||||||||||| Sbjct: 3062648 gctgcagcttcttcttgaga 3062667
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ttttgtttctaaaggtgaac 106 |||||||||||||||||||| Sbjct: 405327 ttttgtttctaaaggtgaac 405308
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 tgtgtcctggctcactgtaa 611 |||||||||||||||||||| Sbjct: 1220336 tgtgtcctggctcactgtaa 1220355
>gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, complete sequence Length = 186185 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tacctaagctaacccttgaa 142 |||||||||||||||||||| Sbjct: 89124 tacctaagctaacccttgaa 89105
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aacatatttatctgtaccat 31 |||||||||||||||||||| Sbjct: 27888428 aacatatttatctgtaccat 27888409
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ttttgtttctaaaggtgaac 106 |||||||||||||||||||| Sbjct: 432591 ttttgtttctaaaggtgaac 432572
>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116556 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tcctttgcctatcattcatt 183 |||||||||||||||||||| Sbjct: 7786 tcctttgcctatcattcatt 7805
>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence Length = 183268 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ttttgtttctaaaggtgaac 106 |||||||||||||||||||| Sbjct: 139376 ttttgtttctaaaggtgaac 139357
>dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19 Length = 85020 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 attcttcttctgttgcttca 348 |||||||||||||||||||| Sbjct: 32980 attcttcttctgttgcttca 32961
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aacatatttatctgtaccat 31 |||||||||||||||||||| Sbjct: 96506 aacatatttatctgtaccat 96487
>emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20, complete sequence Length = 139851 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 caccatcatctgcattcatt 276 |||||||||||||||||||| Sbjct: 101880 caccatcatctgcattcatt 101861
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 caaaaccaaaccacaagtca 258 |||||||||||||||||||| Sbjct: 54281 caaaaccaaaccacaagtca 54300
>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete sequence Length = 190917 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 caaaaccaaaccacaagtca 258 |||||||||||||||||||| Sbjct: 82926 caaaaccaaaccacaagtca 82945
>dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT20B10, TM0135, complete sequence Length = 96988 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cagatagatatatttccttt 169 |||||||||||||||||||| Sbjct: 28014 cagatagatatatttccttt 28033 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,409,150 Number of Sequences: 3902068 Number of extensions: 7409150 Number of successful extensions: 170200 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 169899 Number of HSP's gapped (non-prelim): 296 length of query: 669 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 646 effective length of database: 17,143,297,704 effective search space: 11074570316784 effective search space used: 11074570316784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)