ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd17f03 |
|---|---|
| Clone Library Name | barley_pub |
>DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA| Length = 443 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 152 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 247 W+ TTF+ + + FT L +DS P+YL R Sbjct: 174 WIPTTFLACMLTAFVMGFTDLKLDSDPNYLER 205
>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU| Length = 310 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%) Frame = -3 Query: 309 RPAIANYGGSVEVLAVDGEDCLVKYDG-----PESIGS--GVKAAIKEKFPDITNV 163 RP I GG VE++ +DG+D V+ G +S G+ GV+A + E + V Sbjct: 245 RPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGVQAKLVEALGEFVRV 300
>DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA| Length = 443 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 152 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 247 W+ TTF+ + + FT L +DS P YL R Sbjct: 174 WIPTTFLACMLTAFIMGFTDLKLDSDPHYLER 205
>CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoordinated| protein 31) Length = 1261 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -3 Query: 315 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 172 ++ PA+ +Y + V G C+ GPE +G+ V KEKF +I Sbjct: 699 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 745
>DNAJ2_SYNY3 (P73097) Chaperone protein dnaJ 2| Length = 307 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 306 PAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEK-FPD 175 P+ A GG++EV+ +DG LVK P + +G K + +K FP+ Sbjct: 220 PSEAILGGAIEVMTIDG---LVKMTVPAGLKNGQKLRLAKKGFPN 261
>HIS4_LEPIN (Q8F9R5) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 241 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 318 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 223 D+L+ A+ NYG V+AVD D +VK G E Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142
>HIS4_LEPIC (P62354) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 241 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 318 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 223 D+L+ A+ NYG V+AVD D +VK G E Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142
>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated| protein 31) Length = 1260 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -3 Query: 315 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 172 ++ PA+ +Y + V G C+ GPE +G+ V KEKF +I Sbjct: 701 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 747
>TR4_RAT (P55094) Orphan nuclear receptor TR4| Length = 596 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Frame = -3 Query: 366 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 235 + QPE+ + + R D L A+ A+ GGS+ V++ D +++ Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357 Query: 234 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 133 +GP + V K + P+ NV + S RL Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393
>TR4_MOUSE (P49117) Orphan nuclear receptor TR4 (Orphan nuclear receptor TAK1)| Length = 596 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Frame = -3 Query: 366 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 235 + QPE+ + + R D L A+ A+ GGS+ V++ D +++ Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357 Query: 234 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 133 +GP + V K + P+ NV + S RL Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393
>RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) [Contains: Mkn RFC intein] Length = 635 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 Query: 384 RQVFDGDQQPEETTPEAVN 328 R++FD D+ PEE PE VN Sbjct: 581 REIFDMDEIPEEAIPELVN 599
>DNAJ_WOLPM (Q73IV4) Chaperone protein dnaJ| Length = 372 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -3 Query: 312 LRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEK 184 +R +A GG +++ ++DG VK PE +G K +EK Sbjct: 272 IRMTLAVLGGEIDIQSIDGAKIKVKV--PEGTQTGTKLRCREK 312
>DPO1_CHLAU (O08307) DNA polymerase I (EC 2.7.7.7) (POL I)| Length = 942 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -3 Query: 318 DILRPAIAN-YGGSVEVLAVDGEDCLVKYDG--PESIGS--GVKAAIKEKFPDITNV 163 D +R A+AN YGG V D E +YDG P+ + G+K + P + + Sbjct: 145 DHVRVALANPYGGKTSVTLYDLEQVRKRYDGLEPDQLADLRGLKGDTSDNIPGVRGI 201
>FADA_YERPS (Q66FR9) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation| complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) Length = 387 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = -2 Query: 196 HQGEVPRHHECGVHP----VIYRSAGLMPLQCSKWRHVRNTTRFS 74 H G VP +H HP + ++AG+M L + N +R S Sbjct: 120 HMGHVPMNHGVDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQS 164
>FADA_YERPE (Q8ZAM9) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation| complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) Length = 387 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = -2 Query: 196 HQGEVPRHHECGVHP----VIYRSAGLMPLQCSKWRHVRNTTRFS 74 H G VP +H HP + ++AG+M L + N +R S Sbjct: 120 HMGHVPMNHGVDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQS 164
>ERB1_HUMAN (P60509) HERV-R(b)_3p24.3 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (HERV-R(b) Env protein) [Includes: Surface protein domain (SU); Transmembrane protein domain (TM)] Length = 514 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 95 YMSPFTALEWHQASRPVDHWVNTTFVM 175 ++S L W Q + +D+W NTT VM Sbjct: 205 HLSQIAPLCWEQRNHSLDNWPNTTRVM 231
>TSP1_XENLA (P35448) Thrombospondin-1 precursor| Length = 1173 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/71 (32%), Positives = 29/71 (40%) Frame = +2 Query: 26 TFSTKGXIETLV*TKHRKSCCISYMSPFTALEWHQASRPVDHWVNTTFVMSGNFSLMAAF 205 T +T G + TL H+K FTA WH RP ++ VM +MA Sbjct: 1086 TGNTPGQVRTLWHDPHQKG-----WKDFTAYRWHLTHRPKTGFIRV--VMYEGKRVMA-- 1136 Query: 206 TPLPMDSGPSY 238 DSGP Y Sbjct: 1137 -----DSGPIY 1142
>WRN_XENLA (O93530) Werner syndrome ATP-dependent helicase homolog (EC| 3.6.1.-) (Focus forming activity 1) (FFA-1) Length = 1436 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/78 (21%), Positives = 35/78 (44%) Frame = -3 Query: 387 IRQVFDGDQQPEETTPEAVNRHLDILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSG 208 ++ V DG + TPE +R + +L+ YG + ++A+D C+ ++ Sbjct: 569 LQDVKDGKMRVIYMTPEFCSRGISLLQDLDNRYG--ITLIAIDEAHCISEWGHDFRSAYR 626 Query: 207 VKAAIKEKFPDITNVVFT 154 ++K P++ V T Sbjct: 627 SLGSLKRMLPNVPIVALT 644
>Y2028_ARCFU (O28251) Hypothetical protein AF2028| Length = 607 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/76 (26%), Positives = 29/76 (38%) Frame = +2 Query: 152 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTRQXXXXXXXXXXXXXXFAIAGRSMSRCRF 331 W+ TTF + GN+S AF + G +Y FAI S+ Sbjct: 245 WLTTTFKVKGNYSTDEAFVSRLVGFGEAYFQFGPINGNISGTKIIDVFAIGNASIG---V 301 Query: 332 TASGVVSSGCWSPSNT 379 SG +S W+ + T Sbjct: 302 NKSGPDNSNQWTGNVT 317
>FADA_ERWCT (Q6DAP6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation| complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) Length = 387 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Frame = -2 Query: 196 HQGEVPRHHECGVHP----VIYRSAGLMPLQCSKWRHVRNTTR 80 H G VP +H HP I ++AG+M L + N +R Sbjct: 120 HMGHVPMNHGVDFHPGLSRTIAKAAGMMGLTAEMLARMHNISR 162
>Y2806_VIBCH (Q9KNF8) UPF0082 protein VCA0006| Length = 239 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 276 EVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDIT 169 EV ++ ED ++ P + VK A+ E FPD+T Sbjct: 157 EVTDIEHEDGVITVFAPNTEFFKVKTALNEAFPDLT 192
>FMT_MYCPA (Q741F8) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 315 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 369 GDQQPEETTPEAVNRHLDILRPAIANYGGSVEVLAVDGEDC 247 G +P EA++R + +LRPA N V LA DC Sbjct: 42 GKPEPSPVAREALDRGIPVLRPARPNSPEFVAELAQLAPDC 82
>SCX4_TITSE (P45659) Alpha-toxins precursor [Contains: Toxin-5 (Toxin V)| (Tityustoxin V) (Ts V) (TsV); Toxin-4 (Toxin IV) (Tityustoxin IV) (Ts IV) (TsIV); Toxin-3 (Toxin III) (Tityustoxin III) (Ts III) (TsIII)] (Fragment) Length = 80 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 88 YFVHVAIYCTGVASSQPT 141 Y+VH+ YC G+ S+PT Sbjct: 52 YWVHILCYCYGLPDSEPT 69
>SCX1_TITSE (P01496) Toxin IV-5 precursor (Ts3) (Tityustoxin) (Fragment)| Length = 80 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 88 YFVHVAIYCTGVASSQPT 141 Y+VH+ YC G+ S+PT Sbjct: 52 YWVHILCYCYGLPDSEPT 69
>J1I_HCMVA (P09711) Hypothetical protein HKRFX (J1I)| Length = 277 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +1 Query: 277 HTPAVVRDRRTQYVQVPVHRL 339 H PAV R RRTQ+ P H L Sbjct: 80 HAPAVRRQRRTQHAYGPQHSL 100
>DNAJ_WOLTR (Q5GRK1) Chaperone protein dnaJ| Length = 374 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 312 LRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEK 184 +R +A GG ++V ++DG VK PE + K KEK Sbjct: 274 IRMTLAVLGGEIDVQSIDGAKIKVKV--PEGTQTSTKLRCKEK 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,806,152 Number of Sequences: 219361 Number of extensions: 1202749 Number of successful extensions: 3776 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3656 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3773 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
