ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 210 3e-51
3gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare str... 210 3e-51
4gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare str... 210 3e-51
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
6gb|AY110393.1| Zea mays CL5132_1 mRNA sequence 180 2e-42
7gb|AY840979.1| Bifidobacterium breve prophage-like element, comp... 44 0.34
8dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 42 1.3
9gb|AY566569.1| Felis catus myocilin mRNA, complete cds 42 1.3
10dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.3
11gb|AY122115.1| Drosophila melanogaster GH17337 full insert cDNA 40 5.3
12ref|NM_167656.1| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
13ref|NM_167655.1| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
14ref|NM_167654.1| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
15ref|NM_167653.1| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
16ref|NM_167652.1| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
17ref|NM_167651.1| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
18ref|NM_058104.4| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
19ref|NM_058103.2| Drosophila melanogaster 6-phosphofructo-2-kinas... 40 5.3
20gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, r... 40 5.3
21gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, r... 40 5.3
22gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 ... 40 5.3
23gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.3
24dbj|AB023511.1| Drosophila melanogaster mRNA for 6-phosphofructo... 40 5.3
25dbj|AB023510.1| Drosophila melanogaster mRNA for 6-phosphofructo... 40 5.3

>dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full
           insert sequence
          Length = 1154

 Score =  220 bits (111), Expect = 3e-54
 Identities = 201/231 (87%)
 Strand = Plus / Minus

                                                                       
Query: 157 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216
           |||||||||||| |||||||| |||||||||||||||||||| ||||| |  || |||||
Sbjct: 729 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 670

                                                                       
Query: 217 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276
           ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | ||||||
Sbjct: 669 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 610

                                                                       
Query: 277 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336
           ||| |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 609 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 550

                                                              
Query: 337 ctcaggcgtcgtctcttcgggttgctggtccccgtcgaacacctggcggat 387
           ||  ||||| | |||  | || ||||| ||  |||||||||||||||||||
Sbjct: 549 ctggggcgttggctccgccggctgctgatcgtcgtcgaacacctggcggat 499



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  210 bits (106), Expect = 3e-51
 Identities = 163/182 (89%)
 Strand = Plus / Minus

                                                                            
Query: 157      gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216
                |||||||||||| |||||||| |||||||||||||||||||| ||||| |  || |||||
Sbjct: 11245910 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 11245851

                                                                            
Query: 217      gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276
                ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | ||||||
Sbjct: 11245850 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 11245791

                                                                            
Query: 277      cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336
                ||| |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 11245790 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 11245731

                  
Query: 337      ct 338
                ||
Sbjct: 11245730 ct 11245729



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>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAb0085H08, from chromosome 3, complete sequence
          Length = 130656

 Score =  210 bits (106), Expect = 3e-51
 Identities = 163/182 (89%)
 Strand = Plus / Minus

                                                                         
Query: 157   gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216
             |||||||||||| |||||||| |||||||||||||||||||| ||||| |  || |||||
Sbjct: 24863 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 24804

                                                                         
Query: 217   gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276
             ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | ||||||
Sbjct: 24803 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 24744

                                                                         
Query: 277   cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336
             ||| |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 24743 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 24684

               
Query: 337   ct 338
             ||
Sbjct: 24683 ct 24682



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>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0085H08, from chromosome 3, complete sequence
          Length = 126708

 Score =  210 bits (106), Expect = 3e-51
 Identities = 163/182 (89%)
 Strand = Plus / Plus

                                                                         
Query: 157   gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216
             |||||||||||| |||||||| |||||||||||||||||||| ||||| |  || |||||
Sbjct: 35138 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 35197

                                                                         
Query: 217   gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276
             ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | ||||||
Sbjct: 35198 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 35257

                                                                         
Query: 277   cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336
             ||| |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 35258 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 35317

               
Query: 337   ct 338
             ||
Sbjct: 35318 ct 35319



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  210 bits (106), Expect = 3e-51
 Identities = 163/182 (89%)
 Strand = Plus / Minus

                                                                            
Query: 157      gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216
                |||||||||||| |||||||| |||||||||||||||||||| ||||| |  || |||||
Sbjct: 11242673 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 11242614

                                                                            
Query: 217      gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276
                ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | ||||||
Sbjct: 11242613 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 11242554

                                                                            
Query: 277      cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336
                ||| |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 11242553 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 11242494

                  
Query: 337      ct 338
                ||
Sbjct: 11242493 ct 11242492



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>gb|AY110393.1| Zea mays CL5132_1 mRNA sequence
          Length = 844

 Score =  180 bits (91), Expect = 2e-42
 Identities = 163/187 (87%)
 Strand = Plus / Plus

                                                                       
Query: 153 gggtgaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccac 212
           |||| ||||||||| | |||||||| ||||| |||||||||||||| ||||| |  || |
Sbjct: 285 gggtaaacaccacactggtgatgtccgggaatttctccttgatggccgccttgataccgc 344

                                                                       
Query: 213 tcccgatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagca 272
           | |||||||| || || ||||||||| | ||||||||||||||||| || ||||| | ||
Sbjct: 345 tgccgatggattccggcccgtcgtacctcaccaggcagtcctcgccatcgacggccaaca 404

                                                                       
Query: 273 cctccacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttca 332
           | ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 405 catccacgctcccgccgtagttcgcgatcgctggccgcagtatgtccaggtgccggttca 464

                  
Query: 333 ccgcctc 339
           |||||||
Sbjct: 465 ccgcctc 471



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>gb|AY840979.1| Bifidobacterium breve prophage-like element, complete sequence
          Length = 28155

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 176   tcggggaacttctccttgatgg 197
             ||||||||||||||||||||||
Sbjct: 19232 tcggggaacttctccttgatgg 19253



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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 170    gtgatgtcggggaacttctccttgatggc 198
              |||||||| ||| ||||||||||||||||
Sbjct: 739405 gtgatgtctgggtacttctccttgatggc 739377



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>gb|AY566569.1| Felis catus myocilin mRNA, complete cds
          Length = 2125

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 371 tcgaacacctggcggatgtcc 391
           |||||||||||||||||||||
Sbjct: 963 tcgaacacctggcggatgtcc 943



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>dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102a,
             complete sequence
          Length = 54472

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    aaaatcttgttgtatttcgta 96
             |||||||||||||||||||||
Sbjct: 25196 aaaatcttgttgtatttcgta 25216



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>gb|AY122115.1| Drosophila melanogaster GH17337 full insert cDNA
          Length = 3398

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 2089 tcggggaacttctccttgat 2070



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>ref|NM_167656.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RI,
            transcript variant I (Pfrx), mRNA
          Length = 2980

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 1684 tcggggaacttctccttgat 1665



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>ref|NM_167655.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RH,
            transcript variant H (Pfrx), mRNA
          Length = 2987

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 1691 tcggggaacttctccttgat 1672



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>ref|NM_167654.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RF,
            transcript variant F (Pfrx), mRNA
          Length = 2919

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 1623 tcggggaacttctccttgat 1604



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>ref|NM_167653.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RE,
            transcript variant E (Pfrx), mRNA
          Length = 3184

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 1888 tcggggaacttctccttgat 1869



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>ref|NM_167652.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RD,
            transcript variant D (Pfrx), mRNA
          Length = 2990

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 1694 tcggggaacttctccttgat 1675



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>ref|NM_167651.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RA,
            transcript variant A (Pfrx), mRNA
          Length = 2983

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 1687 tcggggaacttctccttgat 1668



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>ref|NM_058104.4| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RB,
            transcript variant B (Pfrx), mRNA
          Length = 3383

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 2087 tcggggaacttctccttgat 2068



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>ref|NM_058103.2| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RG,
            transcript variant G (Pfrx), mRNA
          Length = 2930

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 2087 tcggggaacttctccttgat 2068



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>gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, region 18C-18D, BAC clone
              BACR27L16, complete sequence
          Length = 182623

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    tcggggaacttctccttgat 195
              ||||||||||||||||||||
Sbjct: 110731 tcggggaacttctccttgat 110712



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>gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, region 18D-18D, BAC clone
             BACR10M08, complete sequence
          Length = 180213

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tcggggaacttctccttgat 195
             ||||||||||||||||||||
Sbjct: 49211 tcggggaacttctccttgat 49192



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>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete
              sequence
          Length = 346474

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    tcggggaacttctccttgat 195
              ||||||||||||||||||||
Sbjct: 154977 tcggggaacttctccttgat 154958



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     accaggcagtcctcgccgtc 261
               ||||||||||||||||||||
Sbjct: 3198140 accaggcagtcctcgccgtc 3198159



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>dbj|AB023511.1| Drosophila melanogaster mRNA for 6-phosphofructo 2-kinase/fructose
            2,6-bisphosphatase long form, complete cds
          Length = 2939

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 2087 tcggggaacttctccttgat 2068



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>dbj|AB023510.1| Drosophila melanogaster mRNA for 6-phosphofructo 2-kinase/fructose
            2,6-bisphosphatase short form, complete cds
          Length = 2701

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  tcggggaacttctccttgat 195
            ||||||||||||||||||||
Sbjct: 1394 tcggggaacttctccttgat 1375


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,180,358
Number of Sequences: 3902068
Number of extensions: 2180358
Number of successful extensions: 57952
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57844
Number of HSP's gapped (non-prelim): 107
length of query: 395
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 373
effective length of database: 17,147,199,772
effective search space: 6395905514956
effective search space used: 6395905514956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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