Clone Name | rbasd17f03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full insert sequence Length = 1154 Score = 220 bits (111), Expect = 3e-54 Identities = 201/231 (87%) Strand = Plus / Minus Query: 157 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 729 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 670 Query: 217 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 669 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 610 Query: 277 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 609 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 550 Query: 337 ctcaggcgtcgtctcttcgggttgctggtccccgtcgaacacctggcggat 387 || ||||| | ||| | || ||||| || ||||||||||||||||||| Sbjct: 549 ctggggcgttggctccgccggctgctgatcgtcgtcgaacacctggcggat 499
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 210 bits (106), Expect = 3e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 157 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 11245910 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 11245851 Query: 217 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 11245850 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 11245791 Query: 277 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 11245790 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 11245731 Query: 337 ct 338 || Sbjct: 11245730 ct 11245729
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 210 bits (106), Expect = 3e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 157 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 24863 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 24804 Query: 217 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 24803 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 24744 Query: 277 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 24743 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 24684 Query: 337 ct 338 || Sbjct: 24683 ct 24682
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 210 bits (106), Expect = 3e-51 Identities = 163/182 (89%) Strand = Plus / Plus Query: 157 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 35138 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 35197 Query: 217 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 35198 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 35257 Query: 277 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 35258 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 35317 Query: 337 ct 338 || Sbjct: 35318 ct 35319
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 210 bits (106), Expect = 3e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 157 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 216 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 11242673 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 11242614 Query: 217 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 276 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 11242613 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 11242554 Query: 277 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 336 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 11242553 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 11242494 Query: 337 ct 338 || Sbjct: 11242493 ct 11242492
>gb|AY110393.1| Zea mays CL5132_1 mRNA sequence Length = 844 Score = 180 bits (91), Expect = 2e-42 Identities = 163/187 (87%) Strand = Plus / Plus Query: 153 gggtgaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccac 212 |||| ||||||||| | |||||||| ||||| |||||||||||||| ||||| | || | Sbjct: 285 gggtaaacaccacactggtgatgtccgggaatttctccttgatggccgccttgataccgc 344 Query: 213 tcccgatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagca 272 | |||||||| || || ||||||||| | ||||||||||||||||| || ||||| | || Sbjct: 345 tgccgatggattccggcccgtcgtacctcaccaggcagtcctcgccatcgacggccaaca 404 Query: 273 cctccacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttca 332 | ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 405 catccacgctcccgccgtagttcgcgatcgctggccgcagtatgtccaggtgccggttca 464 Query: 333 ccgcctc 339 ||||||| Sbjct: 465 ccgcctc 471
>gb|AY840979.1| Bifidobacterium breve prophage-like element, complete sequence Length = 28155 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 176 tcggggaacttctccttgatgg 197 |||||||||||||||||||||| Sbjct: 19232 tcggggaacttctccttgatgg 19253
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 170 gtgatgtcggggaacttctccttgatggc 198 |||||||| ||| |||||||||||||||| Sbjct: 739405 gtgatgtctgggtacttctccttgatggc 739377
>gb|AY566569.1| Felis catus myocilin mRNA, complete cds Length = 2125 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 tcgaacacctggcggatgtcc 391 ||||||||||||||||||||| Sbjct: 963 tcgaacacctggcggatgtcc 943
>dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102a, complete sequence Length = 54472 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 aaaatcttgttgtatttcgta 96 ||||||||||||||||||||| Sbjct: 25196 aaaatcttgttgtatttcgta 25216
>gb|AY122115.1| Drosophila melanogaster GH17337 full insert cDNA Length = 3398 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 2089 tcggggaacttctccttgat 2070
>ref|NM_167656.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RI, transcript variant I (Pfrx), mRNA Length = 2980 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 1684 tcggggaacttctccttgat 1665
>ref|NM_167655.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RH, transcript variant H (Pfrx), mRNA Length = 2987 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 1691 tcggggaacttctccttgat 1672
>ref|NM_167654.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RF, transcript variant F (Pfrx), mRNA Length = 2919 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 1623 tcggggaacttctccttgat 1604
>ref|NM_167653.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RE, transcript variant E (Pfrx), mRNA Length = 3184 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 1888 tcggggaacttctccttgat 1869
>ref|NM_167652.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RD, transcript variant D (Pfrx), mRNA Length = 2990 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 1694 tcggggaacttctccttgat 1675
>ref|NM_167651.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RA, transcript variant A (Pfrx), mRNA Length = 2983 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 1687 tcggggaacttctccttgat 1668
>ref|NM_058104.4| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RB, transcript variant B (Pfrx), mRNA Length = 3383 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 2087 tcggggaacttctccttgat 2068
>ref|NM_058103.2| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RG, transcript variant G (Pfrx), mRNA Length = 2930 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 2087 tcggggaacttctccttgat 2068
>gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, region 18C-18D, BAC clone BACR27L16, complete sequence Length = 182623 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 110731 tcggggaacttctccttgat 110712
>gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, region 18D-18D, BAC clone BACR10M08, complete sequence Length = 180213 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 49211 tcggggaacttctccttgat 49192
>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete sequence Length = 346474 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 154977 tcggggaacttctccttgat 154958
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 accaggcagtcctcgccgtc 261 |||||||||||||||||||| Sbjct: 3198140 accaggcagtcctcgccgtc 3198159
>dbj|AB023511.1| Drosophila melanogaster mRNA for 6-phosphofructo 2-kinase/fructose 2,6-bisphosphatase long form, complete cds Length = 2939 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 2087 tcggggaacttctccttgat 2068
>dbj|AB023510.1| Drosophila melanogaster mRNA for 6-phosphofructo 2-kinase/fructose 2,6-bisphosphatase short form, complete cds Length = 2701 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcggggaacttctccttgat 195 |||||||||||||||||||| Sbjct: 1394 tcggggaacttctccttgat 1375 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,180,358 Number of Sequences: 3902068 Number of extensions: 2180358 Number of successful extensions: 57952 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57844 Number of HSP's gapped (non-prelim): 107 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)