ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP) 78 2e-14
2GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP) 77 4e-14
3GLTP_PIG (P68266) Glycolipid transfer protein (GLTP) 75 1e-13
4GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP) 75 1e-13
5CP19A_ORYLA (Q92087) Cytochrome P450 19A1 (EC 1.14.14.1) (Aromat... 31 2.8
6GUTA_BACSU (O34368) Probable glucitol transport protein gutA 30 4.8
7UBC3_YEAST (P14682) Ubiquitin-conjugating enzyme E2-34 kDa (EC 6... 30 4.8
8UBC13_SCHPO (O13685) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.... 30 6.3

>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
 Frame = -2

Query: 618 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVVKK 442
           PFL+    + P  D  G+ +   +K+DI GNIT+++  Y +DPAK++ L  +++ E    
Sbjct: 21  PFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMY 80

Query: 441 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 283
            A+      T  LLWL R + F+    +++ D      HP+     A   +Y   LKK+H
Sbjct: 81  GAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-NKAYEMALKKYH 139

Query: 282 GWLASSSFTVAMKLAPNKDKFMEVIS 205
           GWL    F  A+  AP K  F++ +S
Sbjct: 140 GWLVQKIFKAALYAAPYKSDFLKALS 165



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>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
 Frame = -2

Query: 618 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVVKK 442
           PFL+    + P  D  G+ +   +K+DI GNIT+++  Y ++PAK+  L  +++ E    
Sbjct: 21  PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMY 80

Query: 441 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 283
            A+      T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+H
Sbjct: 81  GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139

Query: 282 GWLASSSFTVAMKLAPNKDKFMEVIS 205
           GW+    F  A+  AP K  F++ +S
Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALS 165



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>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
 Frame = -2

Query: 618 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVVKK 442
           PFL+    + P  D  G+ +   +K+DI GNIT+++  Y ++P K+  L  +++ E    
Sbjct: 21  PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80

Query: 441 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 283
            A+      T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+H
Sbjct: 81  GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139

Query: 282 GWLASSSFTVAMKLAPNKDKFMEVIS 205
           GW+    F  A+  AP K  F++ +S
Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALS 165



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>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
 Frame = -2

Query: 618 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVVKK 442
           PFL+    + P  D  G+ +   +K+DI GNIT+++  Y ++P K+  L  +++ E    
Sbjct: 21  PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80

Query: 441 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 283
            A+      T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+H
Sbjct: 81  GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139

Query: 282 GWLASSSFTVAMKLAPNKDKFMEVIS 205
           GW+    F  A+  AP K  F++ +S
Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALS 165



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>CP19A_ORYLA (Q92087) Cytochrome P450 19A1 (EC 1.14.14.1) (Aromatase) (CYPXIX)|
           (Estrogen synthetase) (P-450AROM)
          Length = 518

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +2

Query: 515 SNLVIFPPI-SLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLS 643
           +N+ ++  I + FT A+  PNL +T ++C+ +++  LD+++ LS
Sbjct: 150 NNVALWKKIRTYFTKALTGPNLQQTVEVCVTSTQTHLDNLSSLS 193



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>GUTA_BACSU (O34368) Probable glucitol transport protein gutA|
          Length = 463

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 362 RNSSTRKSMALVSHRSPLVQLDEPFAVF---FTTSSWTMVYKCSYFAGSEEYLFSNLVIF 532
           +    +K+++++    PL+ L   F  F   F     TMVY  +Y    +E++F   V+F
Sbjct: 230 KKQGIKKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNVNHKEFVFMGTVLF 289



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>UBC3_YEAST (P14682) Ubiquitin-conjugating enzyme E2-34 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
           (Cell division control protein 34) (E3 ubiquitin ligase
           complex SCF subunit CDC34)
          Length = 295

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 500 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLSDL-TW 655
           E++ FS     PP   FT AI  PN+ + G++C+    +  D MT   D  TW
Sbjct: 68  EDFPFS-----PPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETW 115



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>UBC13_SCHPO (O13685) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein
           13)
          Length = 148

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 500 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRK 616
           E +L     + PP   F   I  PN+ K G+ICL T +K
Sbjct: 54  ELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKK 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,649,539
Number of Sequences: 219361
Number of extensions: 1992620
Number of successful extensions: 5822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5818
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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