ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd16p23 |
|---|---|
| Clone Library Name | barley_pub |
>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)| Length = 208 Score = 77.0 bits (188), Expect = 4e-14 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 8/145 (5%) Frame = -1 Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457 FL+ + P D G+ + +K+DI GNIT+++ Y ++PAK+ L +++ E E Sbjct: 22 FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYG 81 Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+HG Sbjct: 82 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHG 140 Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223 W+ F A+ AP K F++ +S Sbjct: 141 WIVQKIFQAALYAAPYKSDFLKALS 165
>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)| Length = 208 Score = 75.9 bits (185), Expect = 9e-14 Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 8/145 (5%) Frame = -1 Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457 FL+ + P D G+ + +K+DI GNIT+++ Y +DPAK++ L +++ E Sbjct: 22 FLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMYG 81 Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298 A+ T LLWL R + F+ +++ D HP+ A +Y LKK+HG Sbjct: 82 AEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-NKAYEMALKKYHG 140 Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223 WL F A+ AP K F++ +S Sbjct: 141 WLVQKIFKAALYAAPYKSDFLKALS 165
>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)| Length = 208 Score = 75.5 bits (184), Expect = 1e-13 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 8/145 (5%) Frame = -1 Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457 FL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 22 FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYG 81 Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+HG Sbjct: 82 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHG 140 Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223 W+ F A+ AP K F++ +S Sbjct: 141 WIVQKIFQAALYAAPYKSDFLKALS 165
>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)| Length = 208 Score = 75.5 bits (184), Expect = 1e-13 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 8/145 (5%) Frame = -1 Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457 FL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 22 FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYG 81 Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+HG Sbjct: 82 AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHG 140 Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223 W+ F A+ AP K F++ +S Sbjct: 141 WIVQKIFQAALYAAPYKSDFLKALS 165
>TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit| Length = 603 Score = 32.7 bits (73), Expect = 0.92 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Frame = -1 Query: 558 IGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKTAKGSSSCT--NGLLWLTRAMDFLVEL 385 +G +T L+N+ S D ++++ YT ++E+E LL + A+D + Sbjct: 405 LGDRLTDLQNRESIDLVQFQNTYTRYEQEIEGNQVDLQRQLVTYQQLLDVKTALDAEIAT 464 Query: 384 FRNLLDHPDWTMSQACTDSYTKTLKKWHGWLASSS 280 ++ LL+ + + A D + G L +S Sbjct: 465 YKKLLEGQELMVRTAMADDFAHATVVRSGTLGGAS 499
>GUTA_BACSU (O34368) Probable glucitol transport protein gutA| Length = 463 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = +2 Query: 380 RNSSTRKSMALVSHRSPLVQLDEPFAVF---FSTSSWTMVYKCSYFAGSEEYLFSNLVIF 550 + +K+++++ PL+ L F F F+ TMVY +Y +E++F V+F Sbjct: 230 KKQGIKKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNVNHKEFVFMGTVLF 289
>MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1487 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = -1 Query: 618 KQILPVLDKFGAAMAIVKSD-IGGNITRLENKYS--SDPAKYEHLYTMVQEEVEKKTA 454 KQ L +LDK MA++ D IG LE K + +D ++ + + E++E + A Sbjct: 871 KQALTMLDKLAPMMAVISDDTIGERFAELEEKIAQLADAKQFLNAHAKAVEQLESQLA 928
>ARO1_PNECA (Q12659) Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate| synthase (EC 4.2.3.4); 3-dehydroquinate dehydratase (EC 4.2.1.10) (3-dehydroquinase); Shikimate dehydrogenase (EC 1.1.1.25); Shikimate kinase (EC 2.7.1.71); 3-phosphoshikima Length = 1581 Score = 30.0 bits (66), Expect = 6.0 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 29/183 (15%) Frame = -1 Query: 576 AIVKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKTAKGSSSCTNGLLWLTRAMDF 397 +I++ DI I KYS D + + L+ + EKK SC G++ A D Sbjct: 901 SIIEEDIKTTILEFIQKYSWDVFRRKELHFLKTLLTEKK-ENYIISCGGGIIETEEARDL 959 Query: 396 L----------VELFRNLLDHPDWTMSQACTDSYTKTL-------KKWHGWLASSSF--- 277 L + + RN+ D + + Y + K+W+ +S F Sbjct: 960 LISYIEANGIVIHIHRNIQDIIKYLNTDKTRAPYQDNIMHVWERRKRWYNLCSSHQFHMT 1019 Query: 276 ---------TVAMKLAPNKDKFMEVISGTGDIKADIEKFCTTFYPFLKENHDFLASVGLD 124 + + L + + F+ I+G +I F LK+ + S+ Sbjct: 1020 STDPTEFKKNIPLNLKSSFNNFLRTITGKNNI----------FSLILKKKRSYFLSLAFS 1069 Query: 123 DMK 115 D++ Sbjct: 1070 DLE 1072 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,355,138 Number of Sequences: 219361 Number of extensions: 1875906 Number of successful extensions: 5621 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 5485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5616 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
