ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP) 77 4e-14
2GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP) 76 9e-14
3GLTP_PIG (P68266) Glycolipid transfer protein (GLTP) 75 1e-13
4GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP) 75 1e-13
5TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit 33 0.92
6GUTA_BACSU (O34368) Probable glucitol transport protein gutA 31 3.5
7MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structura... 30 6.0
8ARO1_PNECA (Q12659) Pentafunctional AROM polypeptide [Includes: ... 30 6.0

>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
 Frame = -1

Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457
           FL+    + P  D  G+ +   +K+DI GNIT+++  Y ++PAK+  L  +++ E E   
Sbjct: 22  FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYG 81

Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298
           A+      T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+HG
Sbjct: 82  AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHG 140

Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223
           W+    F  A+  AP K  F++ +S
Sbjct: 141 WIVQKIFQAALYAAPYKSDFLKALS 165



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>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
 Frame = -1

Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457
           FL+    + P  D  G+ +   +K+DI GNIT+++  Y +DPAK++ L  +++ E     
Sbjct: 22  FLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMYG 81

Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298
           A+      T  LLWL R + F+    +++ D      HP+     A   +Y   LKK+HG
Sbjct: 82  AEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-NKAYEMALKKYHG 140

Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223
           WL    F  A+  AP K  F++ +S
Sbjct: 141 WLVQKIFKAALYAAPYKSDFLKALS 165



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>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
 Frame = -1

Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457
           FL+    + P  D  G+ +   +K+DI GNIT+++  Y ++P K+  L  +++ E E   
Sbjct: 22  FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYG 81

Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298
           A+      T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+HG
Sbjct: 82  AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHG 140

Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223
           W+    F  A+  AP K  F++ +S
Sbjct: 141 WIVQKIFQAALYAAPYKSDFLKALS 165



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>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
 Frame = -1

Query: 633 FLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKT 457
           FL+    + P  D  G+ +   +K+DI GNIT+++  Y ++P K+  L  +++ E E   
Sbjct: 22  FLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYG 81

Query: 456 AKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHG 298
           A+      T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+HG
Sbjct: 82  AEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHG 140

Query: 297 WLASSSFTVAMKLAPNKDKFMEVIS 223
           W+    F  A+  AP K  F++ +S
Sbjct: 141 WIVQKIFQAALYAAPYKSDFLKALS 165



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>TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit|
          Length = 603

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = -1

Query: 558 IGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKTAKGSSSCT--NGLLWLTRAMDFLVEL 385
           +G  +T L+N+ S D  ++++ YT  ++E+E               LL +  A+D  +  
Sbjct: 405 LGDRLTDLQNRESIDLVQFQNTYTRYEQEIEGNQVDLQRQLVTYQQLLDVKTALDAEIAT 464

Query: 384 FRNLLDHPDWTMSQACTDSYTKTLKKWHGWLASSS 280
           ++ LL+  +  +  A  D +        G L  +S
Sbjct: 465 YKKLLEGQELMVRTAMADDFAHATVVRSGTLGGAS 499



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>GUTA_BACSU (O34368) Probable glucitol transport protein gutA|
          Length = 463

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 380 RNSSTRKSMALVSHRSPLVQLDEPFAVF---FSTSSWTMVYKCSYFAGSEEYLFSNLVIF 550
           +    +K+++++    PL+ L   F  F   F+    TMVY  +Y    +E++F   V+F
Sbjct: 230 KKQGIKKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNVNHKEFVFMGTVLF 289



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>MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1487

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 618  KQILPVLDKFGAAMAIVKSD-IGGNITRLENKYS--SDPAKYEHLYTMVQEEVEKKTA 454
            KQ L +LDK    MA++  D IG     LE K +  +D  ++ + +    E++E + A
Sbjct: 871  KQALTMLDKLAPMMAVISDDTIGERFAELEEKIAQLADAKQFLNAHAKAVEQLESQLA 928



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>ARO1_PNECA (Q12659) Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate|
            synthase (EC 4.2.3.4); 3-dehydroquinate dehydratase (EC
            4.2.1.10) (3-dehydroquinase); Shikimate dehydrogenase (EC
            1.1.1.25); Shikimate kinase (EC 2.7.1.71);
            3-phosphoshikima
          Length = 1581

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 29/183 (15%)
 Frame = -1

Query: 576  AIVKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKKTAKGSSSCTNGLLWLTRAMDF 397
            +I++ DI   I     KYS D  + + L+ +     EKK      SC  G++    A D 
Sbjct: 901  SIIEEDIKTTILEFIQKYSWDVFRRKELHFLKTLLTEKK-ENYIISCGGGIIETEEARDL 959

Query: 396  L----------VELFRNLLDHPDWTMSQACTDSYTKTL-------KKWHGWLASSSF--- 277
            L          + + RN+ D   +  +      Y   +       K+W+   +S  F   
Sbjct: 960  LISYIEANGIVIHIHRNIQDIIKYLNTDKTRAPYQDNIMHVWERRKRWYNLCSSHQFHMT 1019

Query: 276  ---------TVAMKLAPNKDKFMEVISGTGDIKADIEKFCTTFYPFLKENHDFLASVGLD 124
                      + + L  + + F+  I+G  +I          F   LK+   +  S+   
Sbjct: 1020 STDPTEFKKNIPLNLKSSFNNFLRTITGKNNI----------FSLILKKKRSYFLSLAFS 1069

Query: 123  DMK 115
            D++
Sbjct: 1070 DLE 1072


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,355,138
Number of Sequences: 219361
Number of extensions: 1875906
Number of successful extensions: 5621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5616
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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