ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (E... 191 1e-85
2RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (E... 142 2e-65
3RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (E... 142 2e-65
4RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (E... 142 5e-65
5RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (E... 142 5e-63
6RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (E... 142 5e-63
7RPOC2_SORBI (Q01923) DNA-directed RNA polymerase beta'' chain (E... 127 6e-45
8RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (E... 101 4e-29
9RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (E... 101 7e-29
10RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (E... 101 7e-29
11RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (E... 101 1e-28
12RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (E... 101 1e-28
13RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (E... 97 2e-28
14RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (E... 101 2e-28
15RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (E... 97 1e-26
16RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (E... 99 4e-26
17RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (E... 97 5e-25
18RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (E... 91 9e-24
19RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC ... 91 6e-23
20RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (E... 101 2e-21
21RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (E... 96 1e-19
22RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (E... 96 1e-19
23RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (E... 95 2e-19
24RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (E... 95 2e-19
25RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (E... 92 2e-18
26RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (E... 91 3e-18
27RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (E... 91 4e-18
28RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (E... 88 3e-17
29RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (E... 83 7e-16
30RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (E... 55 2e-07
31RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (E... 52 1e-06
32RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (E... 52 2e-06
33RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (E... 52 2e-06
34RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (E... 42 0.001
35YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative s... 37 0.047
36WDR43_HUMAN (Q15061) WD-repeat protein 43 35 0.18
37PP2CG_BOVIN (P79126) Protein phosphatase 2C isoform gamma (EC 3.... 35 0.30
38NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neur... 34 0.40
39SPT6H_BRARE (Q8UVK2) Transcription elongation factor SPT6 (Prote... 34 0.40
40PP2CG_MOUSE (Q61074) Protein phosphatase 2C isoform gamma (EC 3.... 34 0.52
41PP2CG_HUMAN (O15355) Protein phosphatase 2C isoform gamma (EC 3.... 33 0.67
42AN32E_HUMAN (Q9BTT0) Acidic leucine-rich nuclear phosphoprotein ... 33 0.67
43CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 ... 33 0.88
44AN32B_SHEEP (Q6A1I3) Acidic leucine-rich nuclear phosphoprotein ... 32 1.5
45IWS1_MOUSE (Q8C1D8) IWS1-like protein 32 2.0
46LEGA_GOSHI (P09802) Legumin A precursor (Beta-globulin) (LEGA-C9... 32 2.0
47BFR2_CRYNE (Q5KBS9) Protein BFR2 32 2.0
48AN32E_MOUSE (P97822) Acidic leucine-rich nuclear phosphoprotein ... 32 2.0
49SET_HUMAN (Q01105) Protein SET (Phosphatase 2A inhibitor I2PP2A)... 32 2.0
50TNNT2_CHICK (P02642) Troponin T, cardiac muscle isoforms (TnTC) 32 2.0
51CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC... 32 2.6
52CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC... 32 2.6
53ZO2_CANFA (Q95168) Tight junction protein ZO-2 (Zonula occludens... 32 2.6
54TRI44_MOUSE (Q9QXA7) Tripartite motif protein 44 (DIPB protein) ... 31 3.3
55TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger pr... 31 3.3
56TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger pr... 31 3.3
57IWS1_RAT (Q3SWT4) IWS1-like protein 31 3.3
58ODPA_STAES (Q8CPN3) Pyruvate dehydrogenase E1 component, alpha s... 31 3.3
59ODPA_STAEQ (Q5HQ76) Pyruvate dehydrogenase E1 component, alpha s... 31 3.3
60MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.4... 31 3.3
61NSBP1_MOUSE (Q9JL35) Nucleosome-binding protein 1 (Nucleosome-bi... 31 3.3
62SCG3_HUMAN (Q8WXD2) Secretogranin-3 precursor (Secretogranin III... 31 4.4
63ODPA_STAAW (P60090) Pyruvate dehydrogenase E1 component, alpha s... 31 4.4
64ODPA_STAAS (Q6GAC1) Pyruvate dehydrogenase E1 component, alpha s... 31 4.4
65ODPA_STAAR (Q6GHZ2) Pyruvate dehydrogenase E1 component, alpha s... 31 4.4
66ODPA_STAAN (Q820A6) Pyruvate dehydrogenase E1 component, alpha s... 31 4.4
67ODPA_STAAM (P60089) Pyruvate dehydrogenase E1 component, alpha s... 31 4.4
68ODPA_STAAC (Q5HGZ1) Pyruvate dehydrogenase E1 component, alpha s... 31 4.4
69CENPB_MOUSE (P27790) Major centromere autoantigen B (Centromere ... 31 4.4
70TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger prot... 31 4.4
71NFL_HUMAN (P07196) Neurofilament triplet L protein (68 kDa neuro... 31 4.4
72DDX27_MOUSE (Q921N6) Probable ATP-dependent RNA helicase DDX27 (... 30 5.7
73AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein ... 30 5.7
74TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger pr... 30 5.7
75YNL1_SCHPO (Q9P6S6) Hypothetical protein SPBC27.01c in chromosom... 30 5.7
76HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein... 30 7.5
77HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein... 30 7.5
78NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof... 30 7.5
79DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx) 30 7.5
80APLP2_HUMAN (Q06481) Amyloid-like protein 2 precursor (Amyloid p... 30 7.5
81CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere ... 30 7.5
82UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-b... 30 7.5
83MNN4_YEAST (P36044) Protein MNN4 30 7.5
84GCN5_YARLI (Q8WZM0) Histone acetyltransferase GCN5 (EC 2.3.1.48) 30 7.5
85GLMM_BORPE (Q7VZ59) Phosphoglucosamine mutase (EC 5.4.2.10) 30 9.7
86GLMM_BORPA (Q7W8R3) Phosphoglucosamine mutase (EC 5.4.2.10) 30 9.7
87GLMM_BORBR (Q7WMD0) Phosphoglucosamine mutase (EC 5.4.2.10) 30 9.7
88RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type r... 30 9.7
89RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.... 30 9.7
90BFR2_YEAST (Q06631) Protein BFR2 (Brefeldin A resistance protein 2) 30 9.7
91TRI44_RAT (Q6QA27) Tripartite motif protein 44 (DIPB protein) 30 9.7
92AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-relate... 30 9.7
93SIAL_PIG (P31936) Bone sialoprotein-2 (Bone sialoprotein II) (BS... 30 9.7
94NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilamen... 30 9.7
95FKBP4_YEAST (Q06205) FK506-binding protein 4 (EC 5.2.1.8) (Pepti... 30 9.7
96DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx) 30 9.7
97PTMS_HUMAN (P20962) Parathymosin 30 9.7 
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1479

 Score =  191 bits (484), Expect(2) = 1e-85
 Identities = 97/131 (74%), Positives = 100/131 (76%)
 Frame = -2

Query: 624  SKYGILXXXXXXXXXXXXYGSPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGT 445
            SKYGIL            YGSPEN+YGNPENEYRTLEKDSEEEYG+PESKYRTQEDEYGT
Sbjct: 649  SKYGILEDEYEYETLEDEYGSPENEYGNPENEYRTLEKDSEEEYGSPESKYRTQEDEYGT 708

Query: 444  LEEDSEDEYGSPGESGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSL 265
            +EEDSEDEYGSPGES EEKYGTL                  SILKKEGLIEHRGTKEFSL
Sbjct: 709  IEEDSEDEYGSPGESAEEKYGTLEEDSEEDSEDEYESPEEDSILKKEGLIEHRGTKEFSL 768

Query: 264  KYQKEVDRFFF 232
            KYQKEVDRFFF
Sbjct: 769  KYQKEVDRFFF 779



 Score =  146 bits (368), Expect(2) = 1e-85
 Identities = 73/74 (98%), Positives = 73/74 (98%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRS LGGLVRVKRKKSHTELKIFSGD
Sbjct: 777 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGD 836

Query: 59  IHFPEEADKILGGC 18
           IHFPEEADKILGGC
Sbjct: 837 IHFPEEADKILGGC 850
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>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1534

 Score =  142 bits (358), Expect(2) = 2e-65
 Identities = 71/73 (97%), Positives = 72/73 (98%)
 Frame = -3

Query: 239  FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
            FFFILQELHILPRSSSLK+LDNSIIGVDTQLTKNTRS LGGLVRVKRKKSHTELKIFSGD
Sbjct: 821  FFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGD 880

Query: 59   IHFPEEADKILGG 21
            IHFPEEADKILGG
Sbjct: 881  IHFPEEADKILGG 893



 Score =  127 bits (319), Expect(2) = 2e-65
 Identities = 70/115 (60%), Positives = 80/115 (69%), Gaps = 6/115 (5%)
 Frame = -2

Query: 558  ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDE--YGTLEEDSEDEYGSPGESGEEKY 385
            E++YG  E+EYRTLEKDSEEEYG+ E+KYRT+E E  Y  LEEDSE+EYGS  +  E++Y
Sbjct: 709  EDEYGILEDEYRTLEKDSEEEYGSLENKYRTREGEGEYEILEEDSEEEYGSSEDGSEKEY 768

Query: 384  GTLXXXXXXXXXXXXXXXXXX----SILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
            GTL                      SILKKEG IEHRGTKEFSLKYQKEVDRFFF
Sbjct: 769  GTLEEDSEEDSEEDSEDEYGSPEENSILKKEGFIEHRGTKEFSLKYQKEVDRFFF 823



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 32/58 (55%), Positives = 36/58 (62%)
 Frame = -2

Query: 552 KYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           +Y   E EYRT     EEEY   E +YRT+E+EY T EEDSEDEY SP    E KY T
Sbjct: 635 RYRTLEEEYRT----QEEEYRTREEEYRTREEEYRTREEDSEDEYESP----ENKYRT 684
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>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1534

 Score =  142 bits (358), Expect(2) = 2e-65
 Identities = 71/73 (97%), Positives = 72/73 (98%)
 Frame = -3

Query: 239  FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
            FFFILQELHILPRSSSLK+LDNSIIGVDTQLTKNTRS LGGLVRVKRKKSHTELKIFSGD
Sbjct: 821  FFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGD 880

Query: 59   IHFPEEADKILGG 21
            IHFPEEADKILGG
Sbjct: 881  IHFPEEADKILGG 893



 Score =  127 bits (319), Expect(2) = 2e-65
 Identities = 70/115 (60%), Positives = 80/115 (69%), Gaps = 6/115 (5%)
 Frame = -2

Query: 558  ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDE--YGTLEEDSEDEYGSPGESGEEKY 385
            E++YG  E+EYRTLEKDSEEEYG+ E+KYRT+E E  Y  LEEDSE+EYGS  +  E++Y
Sbjct: 709  EDEYGILEDEYRTLEKDSEEEYGSLENKYRTREGEGEYEILEEDSEEEYGSSEDGSEKEY 768

Query: 384  GTLXXXXXXXXXXXXXXXXXX----SILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
            GTL                      SILKKEG IEHRGTKEFSLKYQKEVDRFFF
Sbjct: 769  GTLEEDSEEDSEEDSEDEYGSPEENSILKKEGFIEHRGTKEFSLKYQKEVDRFFF 823



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 32/58 (55%), Positives = 36/58 (62%)
 Frame = -2

Query: 552 KYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           +Y   E EYRT     EEEY   E +YRT+E+EY T EEDSEDEY SP    E KY T
Sbjct: 635 RYRTLEEEYRT----QEEEYRTREEEYRTREEEYRTREEDSEDEYESP----ENKYRT 684
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>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1527

 Score =  142 bits (358), Expect(2) = 5e-65
 Identities = 71/73 (97%), Positives = 72/73 (98%)
 Frame = -3

Query: 239  FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
            FFFILQELHILPRSSSLK+LDNSIIGVDTQLTKNTRS LGGLVRVKRKKSHTELKIFSGD
Sbjct: 814  FFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGD 873

Query: 59   IHFPEEADKILGG 21
            IHFPEEADKILGG
Sbjct: 874  IHFPEEADKILGG 886



 Score =  125 bits (315), Expect(2) = 5e-65
 Identities = 69/115 (60%), Positives = 80/115 (69%), Gaps = 6/115 (5%)
 Frame = -2

Query: 558  ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDE--YGTLEEDSEDEYGSPGESGEEKY 385
            E++YG  E+EYRTLEKDSEEEYG+ E+KYRT+E E  Y  LEE+SE+EYGS  +  E++Y
Sbjct: 702  EDEYGILEDEYRTLEKDSEEEYGSLENKYRTREGEGEYEILEEESEEEYGSSEDGSEKEY 761

Query: 384  GTLXXXXXXXXXXXXXXXXXX----SILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
            GTL                      SILKKEG IEHRGTKEFSLKYQKEVDRFFF
Sbjct: 762  GTLEEDSEEDSEEDSEDEYGSPEEDSILKKEGFIEHRGTKEFSLKYQKEVDRFFF 816



 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 30/50 (60%), Positives = 33/50 (66%)
 Frame = -2

Query: 528 YRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           YRTLE    EEY   E +YRT+E+EY T EEDSEDEY SP    E KY T
Sbjct: 636 YRTLE----EEYRTQEEEYRTREEEYRTREEDSEDEYESP----ENKYRT 677
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>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1513

 Score =  142 bits (358), Expect(2) = 5e-63
 Identities = 71/73 (97%), Positives = 72/73 (98%)
 Frame = -3

Query: 239  FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
            FFFILQELHILPRSSSLK+LDNSIIGVDTQLTKNTRS LGGLVRVKRKKSHTELKIFSGD
Sbjct: 795  FFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGD 854

Query: 59   IHFPEEADKILGG 21
            IHFPEEADKILGG
Sbjct: 855  IHFPEEADKILGG 867



 Score =  119 bits (298), Expect(2) = 5e-63
 Identities = 65/113 (57%), Positives = 79/113 (69%), Gaps = 4/113 (3%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE---- 391
           E++YG  E+EYRT E++SE+EYG+PE+KYR +ED+YGTLEEDSEDE+G+  E  EE    
Sbjct: 700 EDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSED 759

Query: 390 KYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           +YG                    S+LKK  LIEHRGTKEFSLKYQKEVDRFFF
Sbjct: 760 EYGN---------------PEEDSVLKKGVLIEHRGTKEFSLKYQKEVDRFFF 797



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = -2

Query: 513 KDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           K  ++  G  + +YRT EDEY T E+DSE+EYGSP    E +Y T
Sbjct: 623 KKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSP----ENEYRT 663
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>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1513

 Score =  142 bits (358), Expect(2) = 5e-63
 Identities = 71/73 (97%), Positives = 72/73 (98%)
 Frame = -3

Query: 239  FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
            FFFILQELHILPRSSSLK+LDNSIIGVDTQLTKNTRS LGGLVRVKRKKSHTELKIFSGD
Sbjct: 795  FFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGD 854

Query: 59   IHFPEEADKILGG 21
            IHFPEEADKILGG
Sbjct: 855  IHFPEEADKILGG 867



 Score =  119 bits (298), Expect(2) = 5e-63
 Identities = 65/113 (57%), Positives = 79/113 (69%), Gaps = 4/113 (3%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE---- 391
           E++YG  E+EYRT E++SE+EYG+PE+KYR +ED+YGTLEEDSEDE+G+  E  EE    
Sbjct: 700 EDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSED 759

Query: 390 KYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           +YG                    S+LKK  LIEHRGTKEFSLKYQKEVDRFFF
Sbjct: 760 EYGN---------------PEEDSVLKKGVLIEHRGTKEFSLKYQKEVDRFFF 797



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = -2

Query: 513 KDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           K  ++  G  + +YRT EDEY T E+DSE+EYGSP    E +Y T
Sbjct: 623 KKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSP----ENEYRT 663
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>RPOC2_SORBI (Q01923) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit) (Fragment)
          Length = 435

 Score =  127 bits (319), Expect(2) = 6e-45
 Identities = 70/115 (60%), Positives = 80/115 (69%), Gaps = 6/115 (5%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDE--YGTLEEDSEDEYGSPGESGEEKY 385
           E++YG  E+EYRTLEKDSEEEYG+ E+KYRT+E E  Y  LEEDSE+EYGS  +  E++Y
Sbjct: 287 EDEYGILEDEYRTLEKDSEEEYGSLENKYRTREGEGEYEILEEDSEEEYGSSEDGSEKEY 346

Query: 384 GTLXXXXXXXXXXXXXXXXXX----SILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           GTL                      SILKKEG IEHRGTKEFSLKYQKEVDRFFF
Sbjct: 347 GTLEEDSEEDSEEDSEDEYGSPEEDSILKKEGFIEHRGTKEFSLKYQKEVDRFFF 401



 Score = 73.9 bits (180), Expect(2) = 6e-45
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRS 129
           FFFILQELHILPRSSSLK+LDNSIIGVDTQLTKNTRS
Sbjct: 399 FFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRS 435



 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 23/39 (58%), Positives = 26/39 (66%)
 Frame = -2

Query: 495 YGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           Y   E +YRT+E+EY T EEDSEDEY SP    E KY T
Sbjct: 228 YRTLEEEYRTREEEYRTREEDSEDEYESP----ENKYRT 262
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>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1387

 Score =  101 bits (252), Expect(2) = 4e-29
 Identities = 50/70 (71%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSIIGVDTQ+T  TRS +GGLVRV+RKK   ELKIFSGD
Sbjct: 664 FFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLTTRSRVGGLVRVERKKKRIELKIFSGD 723

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 724 IHFPGETDKI 733



 Score = 46.6 bits (109), Expect(2) = 4e-29
 Identities = 27/57 (47%), Positives = 31/57 (54%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           SG  KYGT+                   I+KKE LIE+RG KEF  KYQ +VDRFFF
Sbjct: 625 SGITKYGTIEVHS---------------IVKKEDLIEYRGVKEFRPKYQMKVDRFFF 666
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>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1392

 Score =  101 bits (251), Expect(2) = 7e-29
 Identities = 49/70 (70%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSI+GVDTQ+T N RS +GGLVRV+RKK   ELKIFSGD
Sbjct: 667 FFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGD 726

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 727 IHFPGETDKI 736



 Score = 46.2 bits (108), Expect(2) = 7e-29
 Identities = 26/57 (45%), Positives = 31/57 (54%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           SG  KYGT+                   ++KKE LIE+RG KEF  KYQ +VDRFFF
Sbjct: 628 SGIIKYGTIETHS---------------VIKKEDLIEYRGVKEFRPKYQMKVDRFFF 669
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>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1389

 Score =  101 bits (251), Expect(2) = 7e-29
 Identities = 49/70 (70%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSI+GVDTQ+T N RS +GGLVRV+RKK   ELKIFSGD
Sbjct: 667 FFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGD 726

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 727 IHFPGETDKI 736



 Score = 46.2 bits (108), Expect(2) = 7e-29
 Identities = 26/57 (45%), Positives = 31/57 (54%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           SG  KYGT+                   ++KKE LIE+RG KEF  KYQ +VDRFFF
Sbjct: 628 SGIIKYGTIETHS---------------VIKKEDLIEYRGVKEFRPKYQMKVDRFFF 669
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>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1392

 Score =  101 bits (251), Expect(2) = 1e-28
 Identities = 49/70 (70%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSI+GVDTQ+T N RS +GGLVRV+RKK   ELKIFSGD
Sbjct: 667 FFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGD 726

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 727 IHFPGETDKI 736



 Score = 45.1 bits (105), Expect(2) = 1e-28
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           ++KKE L+E+RG KEF  KYQ +VDRFFF
Sbjct: 641 VIKKEDLLEYRGVKEFRPKYQMKVDRFFF 669
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>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1388

 Score =  101 bits (251), Expect(2) = 1e-28
 Identities = 49/70 (70%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSI+GVDTQ+T N RS +GGLVRV+RKK   ELKIFSGD
Sbjct: 663 FFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGD 722

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 723 IHFPGETDKI 732



 Score = 45.1 bits (105), Expect(2) = 1e-28
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           ++KKE L+E+RG KEF  KYQ +VDRFFF
Sbjct: 637 VIKKEDLLEYRGVKEFRPKYQMKVDRFFF 665
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>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1386

 Score = 97.1 bits (240), Expect(2) = 2e-28
 Identities = 47/70 (67%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NS+IGVDT++T N RS +GGLVRV+RKK + ELKI SGD
Sbjct: 666 FFFIPEEVHILPGSSSIMVRNNSLIGVDTRITLNIRSRVGGLVRVERKKKNIELKIVSGD 725

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 726 IHFPGETDKI 735



 Score = 48.9 bits (115), Expect(2) = 2e-28
 Identities = 28/57 (49%), Positives = 32/57 (56%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           SG  KYGT+                   I+KKE  IE+RGTKEFS KYQ +VDRFFF
Sbjct: 627 SGITKYGTVEIDS---------------IVKKEDFIEYRGTKEFSSKYQMKVDRFFF 668
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>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1392

 Score =  101 bits (251), Expect(2) = 2e-28
 Identities = 49/70 (70%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSI+GVDTQ+T N RS +GGLVRV+RKK   ELKIFSGD
Sbjct: 667 FFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKQIELKIFSGD 726

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 727 IHFPGETDKI 736



 Score = 44.3 bits (103), Expect(2) = 2e-28
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           ++KKE L+E+RG KEFS KYQ +VD FFF
Sbjct: 641 VIKKEDLLEYRGVKEFSPKYQMKVDLFFF 669
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>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1377

 Score = 96.7 bits (239), Expect(2) = 1e-26
 Identities = 47/70 (67%), Positives = 57/70 (81%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SS + + +NSIIGV+T++  NTRS +GGLVRV+RKK   ELKIFSGD
Sbjct: 668 FFFIPEEVHILPASSPVMVRNNSIIGVNTRIALNTRSRVGGLVRVERKKKRIELKIFSGD 727

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 728 IHFPGETDKI 737



 Score = 43.5 bits (101), Expect(2) = 1e-26
 Identities = 26/57 (45%), Positives = 30/57 (52%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           SG  KYGT+                   I+KKE LIE+R  KEF  KYQ +VDRFFF
Sbjct: 629 SGITKYGTIGVDS---------------IVKKEDLIEYRRAKEFRPKYQMKVDRFFF 670
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>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1392

 Score = 99.0 bits (245), Expect(2) = 4e-26
 Identities = 47/70 (67%), Positives = 57/70 (81%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HI P SSS+ + +NS+IGVDT++  NTRS +GGLVRV+RKK   ELKIFSGD
Sbjct: 668 FFFIPEEVHIFPESSSIMVRNNSLIGVDTRIALNTRSRVGGLVRVERKKKRIELKIFSGD 727

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 728 IHFPGETDKI 737



 Score = 39.3 bits (90), Expect(2) = 4e-26
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           SG  KYGTL                   ++KKE LIE+RG KEF  K Q ++D FFF
Sbjct: 629 SGIIKYGTLGVHS---------------VVKKEDLIEYRGIKEFKQKCQMKLDPFFF 670
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>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1373

 Score = 96.7 bits (239), Expect(2) = 5e-25
 Identities = 47/70 (67%), Positives = 57/70 (81%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILPRSSS+ + +NSIIGVDT++T N RS +GGLVRV++KK   ELKI SGD
Sbjct: 664 FFFIPEEVHILPRSSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVEKKKKRIELKISSGD 723

Query: 59  IHFPEEADKI 30
           IHFP E D I
Sbjct: 724 IHFPGETDNI 733



 Score = 37.7 bits (86), Expect(2) = 5e-25
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKE--VDRFFF 232
           SG  KYGT+                   I+KKE LIE+R T+EF  KYQ +  V+RFFF
Sbjct: 623 SGIAKYGTIEVDS---------------IIKKEDLIEYRKTREFGPKYQIQIKVNRFFF 666
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>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1401

 Score = 90.9 bits (224), Expect(2) = 9e-24
 Identities = 46/70 (65%), Positives = 57/70 (81%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FF I +E+HILP SSS+ + +NSIIGVDT++T NTRS +GGLVR+++KK   ELKIFSG 
Sbjct: 669 FFVIPEEVHILPGSSSIMVRNNSIIGVDTRITFNTRSQIGGLVRIEKKKK-IELKIFSGG 727

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 728 IHFPGETDKI 737



 Score = 39.3 bits (90), Expect(2) = 9e-24
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFF 235
           I+KKEGL+E+R  KE   KYQ +VDRFF
Sbjct: 643 IVKKEGLVEYRRPKESRPKYQMKVDRFF 670
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>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit) (Fragment)
          Length = 1163

 Score = 91.3 bits (225), Expect(2) = 6e-23
 Identities = 43/70 (61%), Positives = 56/70 (80%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP+SSSL + +NS++G+ T +T N RS +GGLVR+ +KK   ELKIFSG+
Sbjct: 458 FFFIPEEVHILPKSSSLMVRNNSLVGIGTPITFNIRSRVGGLVRLDKKKKKIELKIFSGN 517

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 518 IHFPGEMDKI 527



 Score = 36.2 bits (82), Expect(2) = 6e-23
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFFF 232
           I +KE  IE+RG KE   K Q +VDRFFF
Sbjct: 432 IFQKEDFIEYRGIKELKPKSQIQVDRFFF 460
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>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1373

 Score =  101 bits (252), Expect = 2e-21
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI QE+HILP SSS+ + +NSIIGVDTQ+T NTRS +GG+VRV+RKK   ELKIFSGD
Sbjct: 661 FFFISQEVHILPGSSSIMVRNNSIIGVDTQITLNTRSRVGGVVRVERKKKKIELKIFSGD 720

Query: 59  IHFPEEADKI 30
           I+FP E DKI
Sbjct: 721 IYFPGETDKI 730



 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = -2

Query: 315 LKKEGLIEHRGTKEFSLKYQKEVDRFFFHSSRTSYL 208
           +KKE LIE+RG KEF  KYQ +VDRFFF S     L
Sbjct: 636 VKKEDLIEYRGVKEFRPKYQMKVDRFFFISQEVHIL 671
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>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1384

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 45/70 (64%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SS++ + + SIIGVDT++T N RS +GGL+RV+RKK   ELKIFSGD
Sbjct: 670 FFFIPEEVHILPESSAIMVENYSIIGVDTRITLNIRSQVGGLIRVERKKKRIELKIFSGD 729

Query: 59  IHFPEEADKI 30
           IHFP++ DKI
Sbjct: 730 IHFPDKTDKI 739



 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = -2

Query: 528 YRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDS-----EDEYGSPGESGEEKYGTLXXXX 364
           ++++++  +E+   P S    +    G    +S     +D       SG  KYGTL    
Sbjct: 584 FQSIQEQEQEKEFIPHSGISVEIPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADS 643

Query: 363 XXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFFHSSRTSYLAE 202
                          I++KE +IE+RG ++F  KY+ +VDRFFF       L E
Sbjct: 644 ---------------IIQKEDMIEYRGVQKFKTKYEMKVDRFFFIPEEVHILPE 682
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>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1376

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 45/70 (64%), Positives = 58/70 (82%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SS++ + + SIIGVDT+LT N RS +GGL+RV++KK   ELKIFSGD
Sbjct: 665 FFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKIFSGD 724

Query: 59  IHFPEEADKI 30
           IHFP++ DKI
Sbjct: 725 IHFPDKTDKI 734



 Score = 40.4 bits (93), Expect = 0.006
 Identities = 24/67 (35%), Positives = 32/67 (47%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFFHSS 223
           SG  KYGTL                   I++KE +IE+RG ++   KY+ +VDRFFF   
Sbjct: 626 SGILKYGTLKADS---------------IIQKEDMIEYRGVQKIKTKYEMKVDRFFFIPE 670

Query: 222 RTSYLAE 202
               L E
Sbjct: 671 EVHILPE 677
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>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1394

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 47/70 (67%), Positives = 57/70 (81%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSIIGV T+LT + RS +GGLVRV++KK   ELKIFSGD
Sbjct: 669 FFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGD 728

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 729 IHFPGEMDKI 738



 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKE--VDRFFFH 229
           SG  KYGT+                   ILKKE LIE+RG K+F  KYQ +  VDRFFF 
Sbjct: 628 SGITKYGTIGVHS---------------ILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFI 672

Query: 228 SSRTSYLAE 202
                 L E
Sbjct: 673 PEEVHILPE 681
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>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1361

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 47/70 (67%), Positives = 56/70 (80%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HIL  SSS+ + +NSIIGVDT +T NTRS +GG+VRV+RKK   EL IFSGD
Sbjct: 659 FFFIPEEVHILAGSSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGD 718

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 719 IHFPGETDKI 728



 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 29/66 (43%), Positives = 33/66 (50%)
 Frame = -2

Query: 402 SGEEKYGTLXXXXXXXXXXXXXXXXXXSILKKEGLIEHRGTKEFSLKYQKEVDRFFFHSS 223
           SG  KYGT+                   I+KKE LIE+RG KEF  KYQ +VDRFFF   
Sbjct: 620 SGITKYGTIEMHS---------------IVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPE 664

Query: 222 RTSYLA 205
               LA
Sbjct: 665 EVHILA 670
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>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1386

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 45/70 (64%), Positives = 55/70 (78%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NS+IGVDT++  NTRS  GGLVRV+RKK    L+IFSG 
Sbjct: 665 FFFIPEEVHILPESSSIMVRNNSLIGVDTRIALNTRSRAGGLVRVERKKRGIALQIFSGT 724

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 725 IHFPGETDKI 734



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFFFHSSRTSYLAE 202
           I+KKEGL+++RG  EF  KYQ  +DRFFF       L E
Sbjct: 639 IVKKEGLVDYRGINEFKPKYQMTIDRFFFIPEEVHILPE 677
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>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1332

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 45/70 (64%), Positives = 55/70 (78%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI QE+HIL  SSS+ + +NSIIGV+T +T N +S +GGLVRV++ K   ELKIFSGD
Sbjct: 638 FFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGD 697

Query: 59  IHFPEEADKI 30
           IHFP E DKI
Sbjct: 698 IHFPGEIDKI 707



 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFFFHSSRTSYLAE 202
           I +KE LIE+RG +EF  KYQ +VDRFFF       L+E
Sbjct: 612 IFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSE 650
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>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1388

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 50/79 (63%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
 Frame = -3

Query: 260 TKKK*IGFFFILQELHILPRSSSLKILDNSIIGVDTQLTKN--TRSGLGGLVRVKRKKSH 87
           T+ K   FFFI +E+HILP SS + + +NSIIGVDT+L  N  TRS +GGLVRV+RKK  
Sbjct: 659 TQMKVDQFFFIPEEIHILPGSSPIMVRNNSIIGVDTRLVLNINTRSRVGGLVRVERKKKS 718

Query: 86  TELKIFSGDIHFPEEADKI 30
            ELKIFSGDIHF  E DKI
Sbjct: 719 LELKIFSGDIHFYGEVDKI 737



 Score = 40.4 bits (93), Expect = 0.006
 Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 2/31 (6%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKE--VDRFFF 232
           I+KKE LIE+RG K+FS KYQ +  VD+FFF
Sbjct: 638 IVKKEDLIEYRGAKDFSPKYQTQMKVDQFFF 668
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>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1386

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 43/70 (61%), Positives = 55/70 (78%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI +E+HILP SSS+ + +NSI+ VDT +T N RS + GLVR+++KK   ELKIFSGD
Sbjct: 666 FFFIPEEVHILPESSSIMVRNNSIVEVDTLITLNIRSRVRGLVRLEKKKKKIELKIFSGD 725

Query: 59  IHFPEEADKI 30
           I+FP E DKI
Sbjct: 726 IYFPGEMDKI 735



 Score = 38.9 bits (89), Expect = 0.016
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 318 ILKKEG-LIEHRGTKEFSLKYQKEVDRFFFHSSRTSYLAE 202
           I KKE  LIE++G KEF  KYQ +VD+FFF       L E
Sbjct: 639 IFKKEDFLIEYQGVKEFKTKYQIKVDQFFFIPEEVHILPE 678
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>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1381

 Score = 83.2 bits (204), Expect = 7e-16
 Identities = 42/69 (60%), Positives = 51/69 (73%)
 Frame = -3

Query: 239 FFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSGD 60
           FFFI  E+HIL  SSS+ +  NSIIG DTQ+T N RS +GGLVRVK+K    +L IFSGD
Sbjct: 669 FFFIPVEVHILSESSSIMVRHNSIIGADTQITFNRRSRVGGLVRVKKKAEKMKLIIFSGD 728

Query: 59  IHFPEEADK 33
           IHFP + +K
Sbjct: 729 IHFPGKTNK 737



 Score = 39.3 bits (90), Expect = 0.012
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = -2

Query: 318 ILKKEGLIEHRGTKEFSLKYQKEVDRFFFHSSRTSYLAE 202
           I+ +E LIE+RG K F  KYQKEV+ FFF       L+E
Sbjct: 643 IVNEENLIEYRGVKVFWPKYQKEVNPFFFIPVEVHILSE 681
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>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1386

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
 Frame = -3

Query: 239 FFFILQELHILPRS-SSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHT-ELKIFS 66
           FFFI +E+++L +S SS+ I +N  I   T +T N RS   GLV++++K ++  ELKI  
Sbjct: 647 FFFIPEEVYVLTQSLSSVFIKNNKFIQAGTLITSNIRSNTNGLVKIQKKGNNNYELKILP 706

Query: 65  GDIHFPEEADKI 30
           G I++P E  KI
Sbjct: 707 GTIYYPNETYKI 718
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>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1330

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
 Frame = -3

Query: 239 FFFILQELHILPRSS--SLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFS 66
           FF + +E++IL +SS  S+ + +NS I   T++T N  S + G V++K+K ++ ++KI  
Sbjct: 611 FFLLPEEVYILDQSSFSSILVKNNSFIKAGTKITFNISSKITGFVKIKKKFNNFKIKILP 670

Query: 65  GDIHFPEEADK 33
           G I++P+E  K
Sbjct: 671 GSIYYPKEKQK 681
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>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1408

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -3

Query: 239 FFFILQELHILPRSSS-LKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHTELKIFSG 63
           FFF+  E++I+  SS+ + + +NSI+   TQ+T    S LGGLV++K  +   E++I  G
Sbjct: 660 FFFLPGEIYIVHESSAYILVSNNSIVQAGTQITPTLTSQLGGLVQIKNIQKSFEIRILPG 719

Query: 62  DIHFPEEADKI 30
            IH P+    I
Sbjct: 720 TIHHPKRIPSI 730
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>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1445

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
 Frame = -3

Query: 239 FFFILQELHILPRS-SSLKILDNSIIGVDTQLTKNTRSGLGGLVRVKRKKSHT-ELKIFS 66
           FF I +E+HIL  S   + + ++S+I  +TQ+T + RS +GGLVR++RK + + E+K+  
Sbjct: 663 FFPIPEEVHILYESFPPILVRNDSLIKKNTQITSDIRSQVGGLVRIRRKMNDSYEVKVLP 722

Query: 65  GDIHFPEEADKI 30
           G ++ PEE   I
Sbjct: 723 GRVYHPEERRNI 734
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>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1420

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = -3

Query: 239 FFFILQELHILPR-SSSLKILDNSIIGVDTQLTKNTRSGLGGLVRV-KRKKSHTELKIFS 66
           FF I +E+++    SSS+ + +N+I+    Q+T N  +  GGL+R+ KR +  T ++I  
Sbjct: 657 FFLIPEEVYLTHEPSSSILVTNNAIVKKGAQITNNIITKSGGLIRMRKRSRDATTIRILP 716

Query: 65  GDIHFPEE 42
           G I+ PE+
Sbjct: 717 GYIYNPEK 724
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>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor|
           YT521)
          Length = 727

 Score = 37.4 bits (85), Expect = 0.047
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 567 GSPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQE-DEYGTLEEDSEDEYGSPGESGEE 391
           GS + +  N ENE   +E+D EE+    E     +E DE G  EE+ E+E     E  EE
Sbjct: 189 GSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEE 248

Query: 390 KY 385
           +Y
Sbjct: 249 EY 250
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>WDR43_HUMAN (Q15061) WD-repeat protein 43|
          Length = 720

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           E +    E++    +KDSE+ +   E +  +++DE   +EE+ ED  G   E+GE++
Sbjct: 643 EEESSEEESDDEIADKDSEDNWDEDEEESESEKDE--DVEEEDEDAEGKDEENGEDR 697
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>PP2CG_BOVIN (P79126) Protein phosphatase 2C isoform gamma (EC 3.1.3.16)|
           (PP2C-gamma) (Protein phosphatase magnesium-dependent 1
           gamma) (Protein phosphatase 1B) (Magnesium-dependent
           calcium inhibitable phosphatase) (MCPP)
          Length = 543

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGT---LEEDSEDEYGSPGESGEEK 388
           E++    E E    E+ SEEE G    +   +EDE  T    E+D E+E   PG  G+E+
Sbjct: 261 EDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEEAEEDDEEEEMMVPGMEGKEE 320

Query: 387 YGT 379
            G+
Sbjct: 321 PGS 323
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>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 848

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2

Query: 522 TLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
           +LEKD++EE   P+ K + + +E G  EE+  D   SP ES +E
Sbjct: 689 SLEKDTKEEKPQPQEKVKEKAEEEGGSEEEGSDR--SPQESKKE 730
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>SPT6H_BRARE (Q8UVK2) Transcription elongation factor SPT6 (Protein pandora)|
          Length = 1726

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTL---------EEDSEDEYGSP- 409
           E K   P+   R +E+D EEE  N E      +DE+G L         EE+ E+E G P 
Sbjct: 17  EEKDLKPKKTQRFMEEDEEEEEENTED-----QDEHGNLRGLIDDDDVEEEEEEERGEPP 71

Query: 408 ----GESGEE 391
                +SGEE
Sbjct: 72  AGEDSDSGEE 81
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>PP2CG_MOUSE (Q61074) Protein phosphatase 2C isoform gamma (EC 3.1.3.16)|
           (PP2C-gamma) (Protein phosphatase magnesium-dependent 1
           gamma) (Protein phosphatase 1C) (Fibroblast growth
           factor-inducible protein 13) (FIN13)
          Length = 542

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEE--YGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKY 385
           E++    E E    E+ SE+E  Y + E++    ED+    EED ++E   PG  G+E+ 
Sbjct: 261 EDESDEVEEEEDDSEECSEDEDGYSSEEAENEEDEDDTEEAEEDDDEEMMVPGMEGKEEP 320

Query: 384 GT 379
           G+
Sbjct: 321 GS 322
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>PP2CG_HUMAN (O15355) Protein phosphatase 2C isoform gamma (EC 3.1.3.16)|
           (PP2C-gamma) (Protein phosphatase magnesium-dependent 1
           gamma) (Protein phosphatase 1C)
          Length = 546

 Score = 33.5 bits (75), Expect = 0.67
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLE-----EDSEDEYGSPGESGE 394
           E++    E E    E+ SEEE G    +   +EDE  T E     E+ E+E   PG  G+
Sbjct: 261 EDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEEAEEDDEEEEEEMMVPGMEGK 320

Query: 393 EKYGT 379
           E+ G+
Sbjct: 321 EEPGS 325
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>AN32E_HUMAN (Q9BTT0) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member E (LANP-like protein) (LANP-L)
          Length = 268

 Score = 33.5 bits (75), Expect = 0.67
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPE--SKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
           +P+++  + E+     E++ E E G PE   +   +E+E    E++ EDE GS    GEE
Sbjct: 155 APDSEEEDDEDGDEDDEEEEENEAGPPEGYEEEEEEEEEEDEDEDEDEDEAGSELGEGEE 214

Query: 390 KYG 382
           + G
Sbjct: 215 EVG 217
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>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen
           240 kDa protein) (Mi2-alpha) (Zinc-finger helicase)
           (hZFH)
          Length = 2000

 Score = 33.1 bits (74), Expect = 0.88
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGS-PGESGEEKY 385
           ENK G P    +   +DSEEE+G+       + DEY    E    EYG+ PG     K+
Sbjct: 59  ENKPGKPRKRKK---RDSEEEFGS-------ERDEYREKSESGGSEYGTGPGRKRRRKH 107



 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 516 EKDSEEEYGNPES-KYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           +K  E + G P   K R  E+E+G+      DEY    ESG  +YGT
Sbjct: 55  KKQKENKPGKPRKRKKRDSEEEFGS----ERDEYREKSESGGSEYGT 97
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>AN32B_SHEEP (Q6A1I3) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member B (Leucine-rich acidic nuclear protein) (LAN)
           (Acidic protein rich in leucines)
          Length = 261

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -2

Query: 537 ENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEED----SEDEYGSPGESGEE 391
           ENE +  ++D EEE  + E      ED  G  +ED     E+E+G  GE+ E+
Sbjct: 175 ENEDKEEDEDGEEEEFDDEEDDDEDEDVEGEEDEDKVSGEEEEFGHDGEADED 227
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>IWS1_MOUSE (Q8C1D8) IWS1-like protein|
          Length = 766

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 522 TLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           T+  DSEEE G  ES  + +ED         +D +GS  ESG E+
Sbjct: 381 TVASDSEEEAGKEESSVKKKED---------KDLFGSDSESGNEE 416
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>LEGA_GOSHI (P09802) Legumin A precursor (Beta-globulin) (LEGA-C94) [Contains:|
           Legumin A acidic chain; Legumin A basic chain]
          Length = 509

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 546 GNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           GNPE E R L + +++  G  E    ++E+E    EE+ ED         EE+
Sbjct: 188 GNPEEEQRQLRRLAQQMQGRSERGEESEEEEGEGEEEEEEDNPSRRSRHQEEE 240
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>BFR2_CRYNE (Q5KBS9) Protein BFR2|
          Length = 463

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 567 GSPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           GS E   G  + +    ++D E+E    E +  + EDE G  E++ E+E   P  +G ++
Sbjct: 96  GSEEGSDGEGDED-EDGDEDDEDEEDEDEDEEESDEDEQGEDEDEDEEEQPQPRANGSKQ 154
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>AN32E_MOUSE (P97822) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member E (LANP-like protein) (LANP-L) (Cerebellar
           postnatal development protein 1)
          Length = 260

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -2

Query: 549 YGNPENEYRTLEKDSEEEYGNPESKYRTQEDE------YGTLEEDSEDEYGSPGESGEEK 388
           +   +NE    E++ +++    E +    EDE      Y   E+D EDE GS    GEE+
Sbjct: 148 FDQEDNEAPDSEEEDDDDEDGDEDEEDEDEDEAGPPEGYEEEEDDDEDEAGSEVGEGEEE 207

Query: 387 YG 382
            G
Sbjct: 208 VG 209
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>SET_HUMAN (Q01105) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)|
           (Template-activating factor I) (TAF-I)
           (HLA-DR-associated protein II) (PHAPII) (Inhibitor of
           granzyme A-activated DNase) (IGAAD)
          Length = 290

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = -2

Query: 543 NPENEYRTLEKDSEEEYGNPESKYRTQE------DEYGTLEEDSEDEYGSPGESGEEKYG 382
           NP   Y   + D EE  G  +     +E      DE G  +E  EDE    GE GEE  G
Sbjct: 228 NPLQYYLVPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEG 287
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>TNNT2_CHICK (P02642) Troponin T, cardiac muscle isoforms (TnTC)|
          Length = 301

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -2

Query: 537 ENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGE 394
           E E   LE+D  +E    E +  T+E    T  E+ EDE  +PGE GE
Sbjct: 21  EEEEEWLEEDDGQEDQVDEEEEETEE----TTAEEQEDETKAPGEGGE 64
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>CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1)
          Length = 784

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           S E+  G+ E E    E++ EEE G+   +   +E+E    EE+ E+E GS  E   E+
Sbjct: 283 SAESGSGSEEEEEE--EEEEEEEEGSTSEESEEEEEEE---EEEEEEETGSNSEEASEQ 336



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
           E K  + E+        SEEE    E +   +E+E G+  E+SE+E     E  EE+ G+
Sbjct: 273 ERKTSSAESSSAESGSGSEEE----EEEEEEEEEEEGSTSEESEEEEEEEEEEEEEETGS 328
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>CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1) (CLK-1) (CDK11) (p58 CLK-1)
          Length = 795

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           S E+  G+ E E    E++ EEE G+   +   +E+E    EE+ E+E GS  E   E+
Sbjct: 296 SAESGSGSEEEEE---EEEEEEEEGSTSEESEEEEEE----EEEEEEETGSNSEEASEQ 347
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>ZO2_CANFA (Q95168) Tight junction protein ZO-2 (Zonula occludens 2 protein)|
           (Zona occludens 2 protein) (Tight junction protein 2)
          Length = 1174

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -2

Query: 567 GSPENKYGNPENEY---RTLEK--DSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGE 403
           G P  +  + E E    R+LE+  D +++Y  P  + R +  E G    D +D+YG PGE
Sbjct: 155 GRPHERAWSQERERSRGRSLERGLDHDDDYRRPRERSRGRSLERGL---DHDDDYGRPGE 211
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>TRI44_MOUSE (Q9QXA7) Tripartite motif protein 44 (DIPB protein) (Mc7 protein)|
          Length = 346

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -2

Query: 567 GSPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           G  E++ G  E+E     +  EE     +S+  + E+     EE+ EDE  S  E   ++
Sbjct: 90  GEVESEVGEEESETEVDSESEEESETEEDSEDESDEESEEDSEEEMEDEQESEAEEDNQE 149

Query: 387 YG 382
            G
Sbjct: 150 EG 151
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>TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 539

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           S + + G+ E E    E++ E  YG+    + T EDE    +E+ E+E
Sbjct: 380 SEDEEEGDEEEEGEEEEEEEEAGYGDGYDDWETDEDEESLGDEEEEEE 427
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>TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger protein 173)|
           (Acid finger protein) (AFP) (RING finger protein 95)
          Length = 539

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           S + + G+ E E    E++ E  YG+    + T EDE    +E+ E+E
Sbjct: 380 SEDEEEGDEEEEGEEEEEEEEAGYGDGYDDWETDEDEESLGDEEEEEE 427
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>IWS1_RAT (Q3SWT4) IWS1-like protein|
          Length = 764

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 525 RTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           +T+  DSEEE G  ES  +  E++         D +GS  ESG E+
Sbjct: 379 KTVASDSEEEVGKEESSVKKSEEK---------DLFGSDSESGNEE 415
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>ODPA_STAES (Q8CPN3) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKYLEAKGLWNEDKENE 318
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>ODPA_STAEQ (Q5HQ76) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKYLEAKGLWNEDKENE 318
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>MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            3) (Runt-related transcription factor-binding protein 2)
            (Monocytic leukemia zinc finger protein) (Zinc finger
            protei
          Length = 2004

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 564  SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEE-DSEDEYGSPGESGE 394
            SP +   +PE E +  E + EEE      + R  E+E   LEE + E+E  +  E+ +
Sbjct: 1253 SPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEEEEDAAAETAQ 1310
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>NSBP1_MOUSE (Q9JL35) Nucleosome-binding protein 1 (Nucleosome-binding protein|
           45) (NBP-45) (GARP45 protein)
          Length = 406

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPE---SKYRTQED-EYGTLEEDSEDEYGSPGESGEE 391
           + K G PE + + +  + + + G PE    +Y  +ED E G  +ED ++  G P E G+E
Sbjct: 261 DGKEGQPEEDGKEIHHEEDGKEGQPEEDGKEYLHEEDGEEGQPKEDQKE--GQPEEDGKE 318
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>SCG3_HUMAN (Q8WXD2) Secretogranin-3 precursor (Secretogranin III) (SgIII)|
          Length = 468

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYG 382
           +N   N    +    + S EE  + + +    E EYG+L++ ++D+  +PG   +E  G
Sbjct: 345 KNATDNISKLFPAPSEKSHEETDSTKEEAAKMEKEYGSLKDSTKDDNSNPGGKTDEPKG 403
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>ODPA_STAAW (P60090) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENE 318
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>ODPA_STAAS (Q6GAC1) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENE 318
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>ODPA_STAAR (Q6GHZ2) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENE 318
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>ODPA_STAAN (Q820A6) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENE 318
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>ODPA_STAAM (P60089) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENE 318
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>ODPA_STAAC (Q5HGZ1) Pyruvate dehydrogenase E1 component, alpha subunit (EC|
           1.2.4.1)
          Length = 370

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           P    G+    YRT ++D+E E  +P  ++R   +  G   ED E+E
Sbjct: 272 PHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENE 318
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>CENPB_MOUSE (P27790) Major centromere autoantigen B (Centromere protein B)|
           (CENP-B)
          Length = 599

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 537 ENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           E E    E++ EEE    E +   +E+E    EE+ E+E G   E GEE+
Sbjct: 404 EGEEEEEEEEEEEEEEEEEGEGEEEEEE----EEEGEEEGGEGEEEGEEE 449



 Score = 30.0 bits (66), Expect = 7.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 546 GNPENEYRTLEKDSEEEYGNPESKYRTQED---EYGTLEEDSEDEYGSPGE 403
           G  E E    E++ EEE G  E +   +E+   E G  EE+ E+E    GE
Sbjct: 405 GEEEEEEEEEEEEEEEEEGEGEEEEEEEEEGEEEGGEGEEEGEEEVEEEGE 455
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>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 542

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           S + + G  E E    E+D E  YG+    + T E++    EE+ E+E
Sbjct: 383 SEDEEEGEEEEEGEEEEEDEEPGYGDRYEDWETDEEDESLGEEEEEEE 430
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>NFL_HUMAN (P07196) Neurofilament triplet L protein (68 kDa neurofilament|
           protein) (Neurofilament light polypeptide) (NF-L)
          Length = 542

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
           E     P +E    E++ ++E    E     +E      EE  E+E G  GE GEE
Sbjct: 463 EEAKDEPPSEGEAEEEEKDKEEAEEEEAAEEEEAAKEESEEAKEEEEGGEGEEGEE 518
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>DDX27_MOUSE (Q921N6) Probable ATP-dependent RNA helicase DDX27 (EC 3.6.1.-)|
           (DEAD box protein 27)
          Length = 760

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 504 EEEYGNPESKYRTQE----DEYGTLEEDSEDEYGSPGESGEEKYGTL 376
           EE+ G  +S  + QE    DE G+ +EDSE +Y S  E    K  TL
Sbjct: 110 EEKEGQADSDLKGQENPGEDEAGSKDEDSETDYSSEDEEILTKADTL 156
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>AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member C (Tumorigenic protein pp32r1)
          Length = 234

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 567 GSPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSE--DEYGSPGESGE 394
           G  + + G  E EY    +  E+E G  E +   +ED  G  EED E  ++    GE  E
Sbjct: 162 GLDDEEEGEHEEEYDEDAQVVEDEEGEEEEEEGEEEDVSGGDEEDEEGYNDGEVDGEEDE 221

Query: 393 EKYG 382
           E+ G
Sbjct: 222 EELG 225
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>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 545

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           S + + G  E E    E+D E  YG+    + T E++    EE+ E+E
Sbjct: 386 SEDEEEGEEEEEGEEEEEDEEVGYGDGYEDWETDEEDESLGEEEEEEE 433
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>YNL1_SCHPO (Q9P6S6) Hypothetical protein SPBC27.01c in chromosome II|
          Length = 132

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKY----------RTQEDEYGTLEEDSE-DEYG 415
           PE  +G    E+   + D EEE  NP++++          R Q +EY   ++ S  D Y 
Sbjct: 61  PEMTHGTKPKEHGEFDTDDEEEEENPDAEFRWGYSARRRIRKQREEYFKNQDKSPLDAYA 120

Query: 414 SPGESGEE 391
              E  EE
Sbjct: 121 DDDEDIEE 128
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>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (E3Histone)
          Length = 4377

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -2

Query: 543  NPENEYRTLEKDSEEEY-------GNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
            N E+    L+ + EEE+       G+ E +  +Q++E    E++ +D+    GE G+E
Sbjct: 2399 NREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDE 2456



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 537  ENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
            + E  T E+DS     + +     +E+E    E+D ED+ G  G+  ++  G+
Sbjct: 2411 DEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGS 2463
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>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin
            ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1)
          Length = 4374

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -2

Query: 543  NPENEYRTLEKDSEEEY-------GNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
            N E+    L+ + EEE+       G+ E +  +Q++E    E++ +D+    GE G+E
Sbjct: 2399 NREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDE 2456



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 537  ENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYGT 379
            + E  T E+DS     + +     +E+E    E+D ED+ G  G+  ++  G+
Sbjct: 2411 DEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGS 2463
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>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 845

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -2

Query: 522 TLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
           +LEKD++EE    + K + + +E G  EE+  D+  SP ES +E
Sbjct: 686 SLEKDTKEEKPQQQEKVKEKAEEEGGSEEEVGDK--SPQESKKE 727
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>DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx)|
          Length = 731

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -2

Query: 561 PENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGT--LEEDSEDEYGSPGESGEEK 388
           P       E+E    E D EEE    E +  T++++     L+ED +DE    G++ ++K
Sbjct: 425 PTTPKAETEDEEDDEESDDEEEEEEEEEEEATEDEDEDLEQLQEDQDDEEEEEGDNEDDK 484
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>APLP2_HUMAN (Q06481) Amyloid-like protein 2 precursor (Amyloid protein homolog)|
           (APPH) (CDEI box-binding protein) (CDEBP)
          Length = 763

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -2

Query: 555 NKYGNPENEYRTLEKDSEEEYGNPESKYRTQED----EYGTLEEDSEDEYGSPGESGEE 391
           +K    E+E    E+D EE+Y   +S++ T+ D        ++ED EDE     E GEE
Sbjct: 213 SKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDE-----EEGEE 266
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>CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere protein B)|
           (CENP-B)
          Length = 606

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 537 ENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           E E    E++ EEE    E +   +E+E    EE+ E+E G   E GEE+
Sbjct: 404 EGEEEEEEEEEEEEEEEEEGEGEEEEEE----EEEGEEEGGEGEEVGEEE 449
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>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 765

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
 Frame = -2

Query: 543 NPENEYRTL-------EKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
           NP++   TL       E D EEE  + E +   ++DE G   ED  D   S  E   E
Sbjct: 663 NPKSSRTTLQSKSESEEDDDEEEEDDEEEEEEEEDDENGDSSEDGGDSSESSSEDESE 720
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>MNN4_YEAST (P36044) Protein MNN4|
          Length = 1178

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 543  NPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYG 382
            N +NE    +K+ EEE    E K +  EDE    +E+ E +     E  +++ G
Sbjct: 1122 NKKNEDEEKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQEEG 1175
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>GCN5_YARLI (Q8WZM0) Histone acetyltransferase GCN5 (EC 2.3.1.48)|
          Length = 464

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 510 DSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGE 394
           D +EE    E+K    ED+    E+D ED+    GE GE
Sbjct: 42  DEDEEEEEEEAKDEGDEDDEEKGEDDEEDDEEKEGEDGE 80
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>GLMM_BORPE (Q7VZ59) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 452

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 548 MGTQRTNIGL*RKTQKRNMGTQRANIGPK 462
           +GT  TN GL R+ Q+  +G +RAN+G +
Sbjct: 290 VGTLMTNYGLERQLQQIGVGFERANVGDR 318
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>GLMM_BORPA (Q7W8R3) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 452

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 548 MGTQRTNIGL*RKTQKRNMGTQRANIGPK 462
           +GT  TN GL R+ Q+  +G +RAN+G +
Sbjct: 290 VGTLMTNYGLERQLQQIGVGFERANVGDR 318
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>GLMM_BORBR (Q7WMD0) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 452

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 548 MGTQRTNIGL*RKTQKRNMGTQRANIGPK 462
           +GT  TN GL R+ Q+  +G +RAN+G +
Sbjct: 290 VGTLMTNYGLERQLQQIGVGFERANVGDR 318
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>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5038

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 516  EKDSEEEYGNPESKYRTQEDEYGTL----EEDSEDEYGSPGESGE 394
            E++ EEE G  E +   +EDE  T     +E+ E+E  + GE  E
Sbjct: 1876 EEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEE 1920
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>RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.7.7.6)|
          Length = 396

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 501 EEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGES 400
           EEY + +++++  EDEY   +ED ++  GS  E+
Sbjct: 20  EEYYDDDAEFQNSEDEYPPSDEDLDNSGGSDDEN 53
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>BFR2_YEAST (Q06631) Protein BFR2 (Brefeldin A resistance protein 2)|
          Length = 534

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 537 ENEYRTLEKDSEEEYGNPESKYRT-QEDEYGTLEEDSEDEYGSPGESGEEK 388
           ENE    E++ EEE       +RT  EDE   ++E+  D  G   E  ++K
Sbjct: 96  ENEDEEEEEEEEEEKEEDALSFRTDSEDEEVEIDEEESDADGGETEEAQQK 146
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>TRI44_RAT (Q6QA27) Tripartite motif protein 44 (DIPB protein)|
          Length = 344

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -2

Query: 567 GSPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEK 388
           G  E++ G  E+E     +  EE     +S+  + E+     EE+ EDE  S  E   ++
Sbjct: 89  GEVESEVGEEESESEVDSESEEESETEEDSEDESDEESEEDSEEEMEDEQESEAEEDNQE 148
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>AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (AP-3 complex
           beta-2 subunit) (Clathrin assembly protein complex 3
           beta-2 large chain) (Neu
          Length = 1082

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -2

Query: 567 GSPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEE 391
           G  E+   +PE+E  +  K S E      S     ED+    +ED E   GS  E  EE
Sbjct: 686 GPTESADSDPESESESDSKSSSESGSGESSSESDNEDQ----DEDEEKGRGSESEQSEE 740
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>SIAL_PIG (P31936) Bone sialoprotein-2 (Bone sialoprotein II) (BSP II)|
           (Cell-binding sialoprotein) (Integrin-binding
           sialoprotein)
          Length = 300

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 564 SPENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDE 421
           S EN  G+   E    E++S EE  N E+     ED  G  +EDSE E
Sbjct: 51  SEENGNGDSSEEEEEEEENSNEEENNEEN-----EDSDGNEDEDSEAE 93



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 510 DSEEEYGNPESKYRTQEDEYGTLE----EDSEDEYGSPGESGEEKYGTL 376
           DS EE GN +S    +E+E  + E    E++ED  G+  E  E +  TL
Sbjct: 49  DSSEENGNGDSSEEEEEEEENSNEEENNEENEDSDGNEDEDSEAENITL 97
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>NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilament light|
           polypeptide) (NF-L)
          Length = 555

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -2

Query: 567 GSPENKYGNPENEYRTLEKDSEEEYGNPES---KYRTQEDEYGTLEEDSEDEYGSPGESG 397
           G  E K    E E    E + EEE    ES   K   +E+   T  ED E+   +  E+G
Sbjct: 475 GEEEEKEEGEEEEAGGEEAEEEEEGAKEESEEGKEGEEEEGEETAAEDGEESQETAEETG 534

Query: 396 EEK 388
           EE+
Sbjct: 535 EEE 537
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>FKBP4_YEAST (Q06205) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 392

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSP 409
           E K  N ++  R  E+D EE     E K  T++D+     +DSE+    P
Sbjct: 232 EKKKNNKKDSKRKHEEDEEESAKPAEKKQTTKKDKKAEKVKDSEESKPKP 281
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>DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)|
          Length = 739

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 513 KDSEEEYGNPESKYRTQEDEYGTLEEDSEDEYGSPGESGEEKYG 382
           ++SEEE    E +    EDE   LE+  ED+ G   E G +  G
Sbjct: 456 EESEEEEEEEEEEKEATEDEDEDLEQLQEDQGGDEEEEGGDNEG 499
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>PTMS_HUMAN (P20962) Parathymosin|
          Length = 101

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = -2

Query: 558 ENKYGNPENEYRTLEKDSEEEYGNPESKYRTQEDEYGTL------EEDSEDEYGSPGESG 397
           E + G  E E  T E   EE+ G  E +   +ED+ G        EED  D      E+G
Sbjct: 39  EEENGAEEEEEETAEDGEEEDEGEEEDEEEEEEDDEGPALKRAAEEEDEADPKRQKTENG 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,673,061
Number of Sequences: 219361
Number of extensions: 1477449
Number of successful extensions: 6869
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 4893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6150
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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