>IMP2_YEAST (P46972) Mitochondrial inner membrane protease subunit 2 (EC|
           3.4.99.-)
          Length = 177

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
 Frame = -1

Query: 510 GEAMAPVVAPTGGT-----VLVRKLATLSPKELFVGDIVLLKDPEKSDDLIVRRLAAVQG 346
           G +M P + P   T     VL+ K    +P  L   DI+L K P     +  +R   V+G
Sbjct: 39  GTSMQPTLNPQTETLATDWVLLWKFGVKNPSNLSRDDIILFKAPTNPRKVYCKR---VKG 95

Query: 345 YEMVSTDEK---DEPFV-LDKDECWVMADNQELKAKDARDSRLFGPVPMTDIVGRVI 187
               + D K    +P V L +   WV  DN       + DS  FGP+    ++G+ I
Sbjct: 96  LPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYF----HSIDSNTFGPISSGLVIGKAI 148

>RL4_CLOPE (Q8XHS4) 50S ribosomal protein L4|
          Length = 204

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 546 QGKLTFPQWIKGGEAMAPVVAPTGGTV--LVRKLATLSPKELFVGDIVLLKD 397
           QG +  PQWIKGG   AP       ++   +RK+A  S     V D+V+L+D
Sbjct: 75  QGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVADMVVLED 126

>ETFA_CRYNE (Q8J0W1) Probable electron transfer flavoprotein alpha-subunit,|
           mitochondrial precursor (Alpha-ETF)
          Length = 346

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/64 (35%), Positives = 37/64 (57%)
 Frame = -1

Query: 282 VMADNQELKAKDARDSRLFGPVPMTDIVGRVIYSLRTAVDHGPVDNSRVAMFQDSPVLAV 103
           V++  + LK+K++ D+ L    P+ D +G  + + R AVD G  DNS + + Q   V+A 
Sbjct: 228 VVSGGRALKSKESFDTILD---PLADSLGAAVGASRAAVDAGYADNS-LQVGQTGKVVAP 283

Query: 102 ELDV 91
           EL V
Sbjct: 284 ELYV 287

>ETFA_CRYGA (Q5Y223) Probable electron transfer flavoprotein alpha-subunit,|
           mitochondrial precursor (Alpha-ETF)
          Length = 346

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/64 (35%), Positives = 37/64 (57%)
 Frame = -1

Query: 282 VMADNQELKAKDARDSRLFGPVPMTDIVGRVIYSLRTAVDHGPVDNSRVAMFQDSPVLAV 103
           V++  + LK+K++ D+ L    P+ D +G  + + R AVD G  DNS + + Q   V+A 
Sbjct: 228 VVSGGRALKSKESFDAILN---PLADSLGAAVGASRAAVDAGYADNS-LQVGQTGKVVAP 283

Query: 102 ELDV 91
           EL V
Sbjct: 284 ELYV 287

>ETFA_CRYNV (Q8J112) Probable electron transfer flavoprotein alpha-subunit,|
           mitochondrial precursor (Alpha-ETF)
          Length = 346

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = -1

Query: 282 VMADNQELKAKDARDSRLFGPVPMTDIVGRVIYSLRTAVDHGPVDNSRVAMFQDSPVLAV 103
           V++  + LK+K++ D  L    P+ D +G  + + R AVD G  DNS + + Q   V+A 
Sbjct: 228 VVSGGRALKSKESFDKILD---PLADSLGAAVGASRAAVDAGYADNS-LQVGQTGKVVAP 283

Query: 102 ELDV 91
           EL V
Sbjct: 284 ELYV 287

>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)|
          Length = 1759

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 491 TGAMASPPLIHCGKVSLPWK 550
           + + A PPL+HC   SLPWK
Sbjct: 271 SASAAIPPLVHCSDKSLPWK 290

>E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ETS-related|
           protein E74B)
          Length = 883

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +2

Query: 353 TAASRRTIKSSDFSGSFNKTMSPTKSSFGDKVASFLTRTVPPVGATTGAMASPP 514
           +++S  +  SS  S S + + S   S+    VAS +T T PP  A   A ASPP
Sbjct: 29  SSSSSSSSSSSSLSLSSSSSSSSLSSATPTPVASPVTPTSPPPAAAAPAEASPP 82

>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)|
          Length = 1755

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 503 ASPPLIHCGKVSLPWK 550
           A PPL+HC   SLPWK
Sbjct: 275 AIPPLVHCADKSLPWK 290

>LEP_BUCBP (Q89AM6) Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader|
           peptidase I)
          Length = 310

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 13/47 (27%), Positives = 31/47 (65%)
 Frame = -1

Query: 324 EKDEPFVLDKDECWVMADNQELKAKDARDSRLFGPVPMTDIVGRVIY 184
           +K   +++ K + +V+ DN++    ++ DSR +G VP  +++G+V++
Sbjct: 243 QKQGTWIVPKHKYFVLGDNRD----NSLDSRYWGFVPEKNLIGKVVF 285

>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor|
          Length = 317

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +2

Query: 353 TAASRRTIKSSDFSGSFNKTMSPTKSSFGDKVASFLTRTVPPVGATTGAMAS 508
           +++S ++  SS  S   + + S +KSS     +SF+T T P   +++GA+ S
Sbjct: 192 SSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVS 243

>ESPL1_MOUSE (P60330) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein|
            ESPL1) (Extra spindle poles-like 1 protein)
          Length = 2118

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
 Frame = -1

Query: 543  GKLTFPQWIKGGEAMAPVVAPTGGTVLVRKLATLSPKELFVGDIVLLKDPEKSDDLIVRR 364
            G   FPQ  K        + P+G TV V  LATL P  L   + +LL   EK +  I  +
Sbjct: 1679 GSGCFPQAEKESFQERLALIPSGVTVCVLALATLQPGTL--SNTLLLTRLEKDNPPITVK 1736

Query: 363  L----------AAVQGYEMVSTDEKDEPFVLDKDECWV--MADNQELKA 253
            +          A ++ ++ +  D+K+     +K   W   +A +Q ++A
Sbjct: 1737 IPTAQNKLPLSAVLKEFDAIQKDQKENSSCTEKRVWWTGRLALDQRMEA 1785

>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 347 PCTAASRRTIKSSDFSGSFNKTMSPTKSSFGDKVASFLTRTVPPVGATTGAMASPP 514
           P TAA+  T  ++  +G+    M P  SS     AS  T   P    TT + +S P
Sbjct: 32  PATAATPTTAPAASANGTAANAMKPEASSNSSNSASNGTTPAPSTTPTTASNSSAP 87

>IMP1_YEAST (P28627) Mitochondrial inner membrane protease subunit 1 (EC|
           3.4.99.-)
          Length = 189

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
 Frame = -1

Query: 510 GEAMAPVVAPTGGTVLVRKLATLSPKELFVGDIVLLKDPEKSDDLIVRRLAAVQGY---- 343
           GE+M P ++ T   V V K    + + + +GD ++   P   +  I +R+  + G     
Sbjct: 37  GESMLPTLSATNDYVHVLKNFQ-NGRGIKMGDCIVALKPTDPNHRICKRVTGMPGDLVLV 95

Query: 342 ----------EMVSTDEKDEPFV-LDKDECWVMADNQELKAKDARDSRLFGPVPMTDIVG 196
                     +++  +E+   ++ + +   WV  DN       + DSR +  +PM  I+G
Sbjct: 96  DPSTIVNYVGDVLVDEERFGTYIKVPEGHVWVTGDN----LSHSLDSRTYNALPMGLIMG 151

Query: 195 RVI 187
           +++
Sbjct: 152 KIV 154

>RL9_LACPL (Q890J8) 50S ribosomal protein L9|
          Length = 150

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 327 DEKDEPFVLDKDECWVMADNQELKAKDARDSRLFGPVPMTDIVGRVIYSLRTAVDHGPVD 148
           + K    VL+ DE  V     ELKAK   D RLFG +P   I   +    +  +D   ++
Sbjct: 64  EAKQVKTVLEADETVV-----ELKAKAGTDGRLFGSIPSKQIATALADQYQVKLDKRKIE 118

>HNFAA_XENLA (Q05041) Hepatocyte nuclear factor 1-alpha A (HNF-1A-A)|
           (HNF-1-alpha A) (LFB1) (XLFB1A)
          Length = 605

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 306 QRAHPSHQ*RPSHSLARQPVAGQLNHRISLGP 401
           Q+ HPSHQ  PSH   +QP+  Q+   ++  P
Sbjct: 444 QQLHPSHQLHPSH---QQPIVQQVQSHMAQNP 472

>TAN_DROME (Q8T0D4) Protein tantalus|
          Length = 299

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -1

Query: 612 KKYTVGQINSTEMTDAIXKSFFQGKLTFPQWIKGGEAMAPVVAPTGGTVLVRKLATLSPK 433
           K++ + +I+ TE  D + KSF    L       GG A A  +  T  T+   +L T+S +
Sbjct: 229 KRFALKKISMTEFHDRLNKSFDSAMLEGDDAEAGGSAEAVNIPKTSMTMEDIQLPTMSSQ 288

Query: 432 ELFV 421
             F+
Sbjct: 289 HQFL 292

>ETFA_SCHPO (P78790) Probable electron transfer flavoprotein alpha-subunit,|
           mitochondrial precursor (Alpha-ETF)
          Length = 341

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -1

Query: 282 VMADNQELKAKDARDSRLFGPVPMTDIVGRVIYSLRTAVDHGPVDNSRVAMFQDSPVLAV 103
           V+A  + LK K+  +  L    P+ D +G  I + R AVD G  DNS + + Q   ++A 
Sbjct: 228 VVAGGRPLKDKETFERIL---TPLADKLGAAIGATRVAVDSGYADNS-LQIGQTGKIIAP 283

Query: 102 EL 97
           +L
Sbjct: 284 KL 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,360,382
Number of Sequences: 219361
Number of extensions: 1531541
Number of successful extensions: 4037
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4033
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)