ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16p16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 392 e-106
2dbj|AK070814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 392 e-106
3ref|XM_470956.1| Oryza sativa (japonica cultivar-group), predic... 383 e-103
4gb|AY109846.1| Zea mays CL5362_2 mRNA sequence 167 5e-38
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
6emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4,... 149 1e-32
7gb|AC134503.2| Homo sapiens 3 BAC RP11-657G5 (Roswell Park Cance... 42 2.1
8emb|AL355605.10| Human DNA sequence from clone RP11-456P14 on ch... 42 2.1
9gb|AC007623.33| Homo sapiens 12 BAC RP11-608E13 (Roswell Park Ca... 42 2.1
10gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complet... 42 2.1
11gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca... 42 2.1
12gb|AC102775.6| Mus musculus chromosome 8, clone RP23-115C10, com... 40 8.3
13gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 8.3
14gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, com... 40 8.3
15gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, com... 40 8.3
16emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 8.3
17gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosom... 40 8.3
18gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete s... 40 8.3
19gb|AC154637.2| Mus musculus BAC clone RP23-303N14 from chromosom... 40 8.3
20gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromoso... 40 8.3
21emb|CT485787.6| Mouse DNA sequence from clone RP23-412N8 on chro... 40 8.3

>dbj|AK104417.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A03, full
           insert sequence
          Length = 1035

 Score =  392 bits (198), Expect = e-106
 Identities = 467/557 (83%)
 Strand = Plus / Minus

                                                                       
Query: 56  attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 115
           |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 883 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 824

                                                                       
Query: 116 ggtgaatcctggaacatggctacacggctgttgtccactggaccatgatcgacggcagtt 175
           ||||||||||||  |||||| |  |||||||| |||||||| ||||| ||||| || |||
Sbjct: 823 ggtgaatcctggttcatggccattcggctgttctccactgggccatggtcgacagccgtt 764

                                                                       
Query: 176 cttaaagagtatatgactctgccaacaatatcagtcatagggacaggcccaaataagcgg 235
           |||||||||||||| ||||||||||  ||||||||||||||||| || ||||| ||||||
Sbjct: 763 cttaaagagtatatcactctgccaaggatatcagtcatagggactggtccaaacaagcgg 704

                                                                       
Query: 236 ctgtccctagcgtcctttgcctttagttcttggttatctgccatgacccagcattcgtcc 295
           || |||||||| ||||||| |||||||  |||||| |||||||  ||||||||||  |||
Sbjct: 703 ctatccctagcttcctttggctttagtgattggttgtctgccagaacccagcattgatcc 644

                                                                       
Query: 296 ttgtcaagtacaaagggctcatccttctcatcagtagagaccatctcatagccttgcacg 355
           |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||  | |
Sbjct: 643 ttgtcaagtacaaacggctcatccttctcatcattagagaccatctcataaccttctagg 584

                                                                       
Query: 356 gcagccagtcgccggacaattaaatcatcggatttctctgggtccttcaacaagacgatg 415
           ||||||| ||| || || ||||||||||| |||||||||||||| || |  ||||| |  
Sbjct: 583 gcagccaatcgtcgaacgattaaatcatcagatttctctgggtcttttagtaagacaaca 524

                                                                       
Query: 416 tccccaacaaagagttcttttggggataaagtagcgagctttctgacgaggacggttcct 475
           || |||||||||| || | |||| || ||| |  |||||||||| || |||| |||||||
Sbjct: 523 tcaccaacaaagacttgtgttggagacaaattgacgagctttctaacaaggagggttcct 464

                                                                       
Query: 476 ccggtgggagcaacgacaggggccatggcttcgccccctttgatccactgcgggaaggtg 535
           || || | ||   |||  |||||||||||||| ||||| ||| |||| |||  | |||||
Sbjct: 463 cccgtagtagattcgatgggggccatggcttctccccccttgttccaatgcatgtaggtg 404

                                                                       
Query: 536 agcttgccctggaagaagctcttncagatggcatcggtcatctcagtgctgttgatctgc 595
           |||||||| ||||||||| |||| |||| ||||||||| | ||  |||||||||||||| 
Sbjct: 403 agcttgccttggaagaagttcttccagacggcatcggttaactgggtgctgttgatctgg 344

                            
Query: 596 ccaacggtgtacttctt 612
           |||||| | ||||||||
Sbjct: 343 ccaacgttatacttctt 327



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>dbj|AK070814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072A16, full
           insert sequence
          Length = 1035

 Score =  392 bits (198), Expect = e-106
 Identities = 467/557 (83%)
 Strand = Plus / Minus

                                                                       
Query: 56  attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 115
           |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 883 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 824

                                                                       
Query: 116 ggtgaatcctggaacatggctacacggctgttgtccactggaccatgatcgacggcagtt 175
           ||||||||||||  |||||| |  |||||||| |||||||| ||||| ||||| || |||
Sbjct: 823 ggtgaatcctggttcatggccattcggctgttctccactgggccatggtcgacagccgtt 764

                                                                       
Query: 176 cttaaagagtatatgactctgccaacaatatcagtcatagggacaggcccaaataagcgg 235
           |||||||||||||| ||||||||||  ||||||||||||||||| || ||||| ||||||
Sbjct: 763 cttaaagagtatatcactctgccaaggatatcagtcatagggactggtccaaacaagcgg 704

                                                                       
Query: 236 ctgtccctagcgtcctttgcctttagttcttggttatctgccatgacccagcattcgtcc 295
           || |||||||| ||||||| |||||||  |||||| |||||||  ||||||||||  |||
Sbjct: 703 ctatccctagcttcctttggctttagtgattggttgtctgccagaacccagcattgatcc 644

                                                                       
Query: 296 ttgtcaagtacaaagggctcatccttctcatcagtagagaccatctcatagccttgcacg 355
           |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||  | |
Sbjct: 643 ttgtcaagtacaaacggctcatccttctcatcattagagaccatctcataaccttctagg 584

                                                                       
Query: 356 gcagccagtcgccggacaattaaatcatcggatttctctgggtccttcaacaagacgatg 415
           ||||||| ||| || || ||||||||||| |||||||||||||| || |  ||||| |  
Sbjct: 583 gcagccaatcgtcgaacgattaaatcatcagatttctctgggtcttttagtaagacaaca 524

                                                                       
Query: 416 tccccaacaaagagttcttttggggataaagtagcgagctttctgacgaggacggttcct 475
           || |||||||||| || | |||| || ||| |  |||||||||| || |||| |||||||
Sbjct: 523 tcaccaacaaagacttgtgttggagacaaattgacgagctttctaacaaggagggttcct 464

                                                                       
Query: 476 ccggtgggagcaacgacaggggccatggcttcgccccctttgatccactgcgggaaggtg 535
           || || | ||   |||  |||||||||||||| ||||| ||| |||| |||  | |||||
Sbjct: 463 cccgtagtagattcgatgggggccatggcttctccccccttgttccaatgcatgtaggtg 404

                                                                       
Query: 536 agcttgccctggaagaagctcttncagatggcatcggtcatctcagtgctgttgatctgc 595
           |||||||| ||||||||| |||| |||| ||||||||| | ||  |||||||||||||| 
Sbjct: 403 agcttgccttggaagaagttcttccagacggcatcggttaactgggtgctgttgatctgg 344

                            
Query: 596 ccaacggtgtacttctt 612
           |||||| | ||||||||
Sbjct: 343 ccaacgttatacttctt 327



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>ref|XM_470956.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 621

 Score =  383 bits (193), Expect = e-103
 Identities = 462/552 (83%)
 Strand = Plus / Minus

                                                                       
Query: 61  ctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaaccggtga 120
           ||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| |||||
Sbjct: 621 ctacactttattattcttcgccatctcttccacatcaagctctactgccagaactggtga 562

                                                                       
Query: 121 atcctggaacatggctacacggctgttgtccactggaccatgatcgacggcagttcttaa 180
           |||||||  |||||| |  |||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 561 atcctggttcatggccattcggctgttctccactgggccatggtcgacagccgttcttaa 502

                                                                       
Query: 181 agagtatatgactctgccaacaatatcagtcatagggacaggcccaaataagcggctgtc 240
           ||||||||| ||||||||||  ||||||||||||||||| || ||||| |||||||| ||
Sbjct: 501 agagtatatcactctgccaaggatatcagtcatagggactggtccaaacaagcggctatc 442

                                                                       
Query: 241 cctagcgtcctttgcctttagttcttggttatctgccatgacccagcattcgtccttgtc 300
           |||||| ||||||| |||||||  |||||| |||||||  ||||||||||  ||||||||
Sbjct: 441 cctagcttcctttggctttagtgattggttgtctgccagaacccagcattgatccttgtc 382

                                                                       
Query: 301 aagtacaaagggctcatccttctcatcagtagagaccatctcatagccttgcacggcagc 360
           ||||||||| |||||||||||||||||| |||||||||||||||| ||||  | ||||||
Sbjct: 381 aagtacaaacggctcatccttctcatcattagagaccatctcataaccttctagggcagc 322

                                                                       
Query: 361 cagtcgccggacaattaaatcatcggatttctctgggtccttcaacaagacgatgtcccc 420
           || ||| || || ||||||||||| |||||||||||||| || |  ||||| |  || ||
Sbjct: 321 caatcgtcgaacgattaaatcatcagatttctctgggtcttttagtaagacaacatcacc 262

                                                                       
Query: 421 aacaaagagttcttttggggataaagtagcgagctttctgacgaggacggttcctccggt 480
           |||||||| || | |||| || ||| |  |||||||||| || |||| ||||||||| ||
Sbjct: 261 aacaaagacttgtgttggagacaaattgacgagctttctaacaaggagggttcctcccgt 202

                                                                       
Query: 481 gggagcaacgacaggggccatggcttcgccccctttgatccactgcgggaaggtgagctt 540
            | ||   |||  |||||||||||||| ||||| ||| |||| |||  | ||||||||||
Sbjct: 201 agtagattcgatgggggccatggcttctccccccttgttccaatgcatgtaggtgagctt 142

                                                                       
Query: 541 gccctggaagaagctcttncagatggcatcggtcatctcagtgctgttgatctgcccaac 600
           ||| ||||||||| |||| |||| ||||||||| | ||  |||||||||||||| |||||
Sbjct: 141 gccttggaagaagttcttccagacggcatcggttaactgggtgctgttgatctggccaac 82

                       
Query: 601 ggtgtacttctt 612
           | | ||||||||
Sbjct: 81  gttatacttctt 70



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>gb|AY109846.1| Zea mays CL5362_2 mRNA sequence
          Length = 1355

 Score =  167 bits (84), Expect = 5e-38
 Identities = 255/312 (81%)
 Strand = Plus / Plus

                                                                       
Query: 206 tcagtcatagggacaggcccaaataagcggctgtccctagcgtcctttgcctttagttct 265
           |||||||| |||||||| ||||| |||||||| || ||||| ||||||| ||| ||  ||
Sbjct: 495 tcagtcattgggacaggtccaaacaagcggctatctctagcttcctttggcttaaggact 554

                                                                       
Query: 266 tggttatctgccatgacccagcattcgtccttgtcaagtacaaagggctcatccttctca 325
            |||| ||||||| ||||||||||| ||| || || || ||||| |||||||||||||||
Sbjct: 555 aggttgtctgccaggacccagcattggtctttctcgagcacaaacggctcatccttctca 614

                                                                       
Query: 326 tcagtagagaccatctcatagccttgcacggcagccagtcgccggacaattaaatcatcg 385
           ||| ||||||||||||||||||||| || |||||||||||| || | ||  ||||   | 
Sbjct: 615 tcattagagaccatctcatagccttccagggcagccagtcgtcgaataacaaaattgcca 674

                                                                       
Query: 386 gatttctctgggtccttcaacaagacgatgtccccaacaaagagttcttttggggataaa 445
           |||||||||||||| || |||||||| | |||||| ||||| | |||  | |||   |||
Sbjct: 675 gatttctctgggtcttttaacaagacaacgtccccgacaaacacttccgtggggctcaaa 734

                                                                       
Query: 446 gtagcgagctttctgacgaggacggttcctccggtgggagcaacgacaggggccatggct 505
            | |||||||||||||| ||||||| |||||| || ||||  ||||  || |||||||||
Sbjct: 735 tttgcgagctttctgacaaggacggctcctccagttggagatacgatgggagccatggct 794

                       
Query: 506 tcgccccctttg 517
           ||  ||||||||
Sbjct: 795 tcttcccctttg 806



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score =  149 bits (75), Expect = 1e-32
 Identities = 132/151 (87%)
 Strand = Plus / Plus

                                                                          
Query: 249    cctttgcctttagttcttggttatctgccatgacccagcattcgtccttgtcaagtacaa 308
              |||||| |||||||  |||||| |||||||  ||||||||||  ||||||||||||||||
Sbjct: 173812 cctttggctttagtgattggttgtctgccagaacccagcattgatccttgtcaagtacaa 173871

                                                                          
Query: 309    agggctcatccttctcatcagtagagaccatctcatagccttgcacggcagccagtcgcc 368
              | |||||||||||||||||| |||||||||||||||| ||||  | |||||||| ||| |
Sbjct: 173872 acggctcatccttctcatcattagagaccatctcataaccttctagggcagccaatcgtc 173931

                                             
Query: 369    ggacaattaaatcatcggatttctctgggtc 399
              | || ||||||||||| ||||||||||||||
Sbjct: 173932 gaacgattaaatcatcagatttctctgggtc 173962



 Score =  113 bits (57), Expect = 7e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                          
Query: 143    ctgttgtccactggaccatgatcgacggcagttcttaaagagtatatgactctgccaaca 202
              ||||| |||||||| ||||| ||||| || ||||||||||||||||| ||||||||||  
Sbjct: 173398 ctgttctccactgggccatggtcgacagccgttcttaaagagtatatcactctgccaagg 173457

                                                               
Query: 203    atatcagtcatagggacaggcccaaataagcggctgtccctagcgtcct 251
              ||||||||||||||||| || ||||| |||||||| |||||||| ||||
Sbjct: 173458 atatcagtcatagggactggtccaaacaagcggctatccctagcttcct 173506



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 100/118 (84%)
 Strand = Plus / Plus

                                                                          
Query: 494    ggggccatggcttcgccccctttgatccactgcgggaaggtgagcttgccctggaagaag 553
              |||||||||||||| ||||| ||| |||| |||  | ||||||||||||| |||||||||
Sbjct: 176173 ggggccatggcttctccccccttgttccaatgcatgtaggtgagcttgccttggaagaag 176232

                                                                        
Query: 554    ctcttncagatggcatcggtcatctcagtgctgttgatctgcccaacggtgtacttct 611
               |||| |||| ||||||||| | ||  |||||||||||||| |||||| | |||||||
Sbjct: 176233 ttcttccagacggcatcggttaactgggtgctgttgatctggccaacgttatacttct 176290



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                          
Query: 56     attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 115
              |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 173215 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 173274

                                               
Query: 116    ggtgaatcctggaacatggctacacggctgttg 148
              ||||||||||||  |||||| |  |||||||||
Sbjct: 173275 ggtgaatcctggttcatggccattcggctgttg 173307



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>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06,
              complete sequence
          Length = 145517

 Score =  149 bits (75), Expect = 1e-32
 Identities = 132/151 (87%)
 Strand = Plus / Plus

                                                                          
Query: 249    cctttgcctttagttcttggttatctgccatgacccagcattcgtccttgtcaagtacaa 308
              |||||| |||||||  |||||| |||||||  ||||||||||  ||||||||||||||||
Sbjct: 105099 cctttggctttagtgattggttgtctgccagaacccagcattgatccttgtcaagtacaa 105158

                                                                          
Query: 309    agggctcatccttctcatcagtagagaccatctcatagccttgcacggcagccagtcgcc 368
              | |||||||||||||||||| |||||||||||||||| ||||  | |||||||| ||| |
Sbjct: 105159 acggctcatccttctcatcattagagaccatctcataaccttctagggcagccaatcgtc 105218

                                             
Query: 369    ggacaattaaatcatcggatttctctgggtc 399
              | || ||||||||||| ||||||||||||||
Sbjct: 105219 gaacgattaaatcatcagatttctctgggtc 105249



 Score =  113 bits (57), Expect = 7e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                          
Query: 143    ctgttgtccactggaccatgatcgacggcagttcttaaagagtatatgactctgccaaca 202
              ||||| |||||||| ||||| ||||| || ||||||||||||||||| ||||||||||  
Sbjct: 104685 ctgttctccactgggccatggtcgacagccgttcttaaagagtatatcactctgccaagg 104744

                                                               
Query: 203    atatcagtcatagggacaggcccaaataagcggctgtccctagcgtcct 251
              ||||||||||||||||| || ||||| |||||||| |||||||| ||||
Sbjct: 104745 atatcagtcatagggactggtccaaacaagcggctatccctagcttcct 104793



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 100/118 (84%)
 Strand = Plus / Plus

                                                                          
Query: 494    ggggccatggcttcgccccctttgatccactgcgggaaggtgagcttgccctggaagaag 553
              |||||||||||||| ||||| ||| |||| |||  | ||||||||||||| |||||||||
Sbjct: 107460 ggggccatggcttctccccccttgttccaatgcatgtaggtgagcttgccttggaagaag 107519

                                                                        
Query: 554    ctcttncagatggcatcggtcatctcagtgctgttgatctgcccaacggtgtacttct 611
               |||| |||| ||||||||| | ||  |||||||||||||| |||||| | |||||||
Sbjct: 107520 ttcttccagacggcatcggttaactgggtgctgttgatctggccaacgttatacttct 107577



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                          
Query: 56     attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 115
              |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 104502 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 104561

                                               
Query: 116    ggtgaatcctggaacatggctacacggctgttg 148
              ||||||||||||  |||||| |  |||||||||
Sbjct: 104562 ggtgaatcctggttcatggccattcggctgttg 104594



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>gb|AC134503.2| Homo sapiens 3 BAC RP11-657G5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 73801

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    ttatctacattttattgttct 77
             |||||||||||||||||||||
Sbjct: 14337 ttatctacattttattgttct 14317



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>emb|AL355605.10| Human DNA sequence from clone RP11-456P14 on chromosome 13, complete
             sequence
          Length = 55142

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 185   tatatgactctgccaacaata 205
             |||||||||||||||||||||
Sbjct: 11287 tatatgactctgccaacaata 11307



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>gb|AC007623.33| Homo sapiens 12 BAC RP11-608E13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 87201

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 506   tcgccccctttgatccactgc 526
             |||||||||||||||||||||
Sbjct: 59157 tcgccccctttgatccactgc 59177



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>gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complete sequence
          Length = 169483

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 57     ttatctacattttattgttcttcac 81
              |||| ||||||||||||||||||||
Sbjct: 149198 ttatatacattttattgttcttcac 149174



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>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160095

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 54     ccattatctacattttattgttctt 78
              |||||||||||||||| ||||||||
Sbjct: 137091 ccattatctacatttttttgttctt 137115



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>gb|AC102775.6| Mus musculus chromosome 8, clone RP23-115C10, complete sequence
          Length = 185846

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     cattatctacattttattgttctt 78
              |||||| |||||||||||||||||
Sbjct: 129821 cattatttacattttattgttctt 129798



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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tattgttcttcaccatctct 88
              ||||||||||||||||||||
Sbjct: 483183 tattgttcttcaccatctct 483202



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>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence
          Length = 170831

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     attatctacattttattgtt 75
              ||||||||||||||||||||
Sbjct: 149377 attatctacattttattgtt 149358



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>gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, complete sequence
          Length = 213829

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     cattatctacattttattgttctt 78
              |||||| |||||||||||||||||
Sbjct: 155283 cattatttacattttattgttctt 155306



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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     tgcacggcagccagtcgccg 369
               ||||||||||||||||||||
Sbjct: 3859530 tgcacggcagccagtcgccg 3859511



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>gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosome ul, complete sequence
          Length = 191648

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    gtcctttgcctttagttctt 266
              ||||||||||||||||||||
Sbjct: 176529 gtcctttgcctttagttctt 176548



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>gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete sequence
          Length = 240447

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tattgttcttcaccatctct 88
              ||||||||||||||||||||
Sbjct: 159906 tattgttcttcaccatctct 159925



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>gb|AC154637.2| Mus musculus BAC clone RP23-303N14 from chromosome 14, complete
             sequence
          Length = 198799

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cagtcatagggacaggccca 226
             ||||||||||||||||||||
Sbjct: 97912 cagtcatagggacaggccca 97931



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>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete sequence
          Length = 230767

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    gtcctttgcctttagttctt 266
              ||||||||||||||||||||
Sbjct: 129308 gtcctttgcctttagttctt 129327



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>emb|CT485787.6| Mouse DNA sequence from clone RP23-412N8 on chromosome 14, complete
              sequence
          Length = 210837

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    cagtcatagggacaggccca 226
              ||||||||||||||||||||
Sbjct: 169197 cagtcatagggacaggccca 169216


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,713,575
Number of Sequences: 3902068
Number of extensions: 4713575
Number of successful extensions: 80816
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80717
Number of HSP's gapped (non-prelim): 99
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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