ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd17e21 |
|---|---|
| Clone Library Name | barley_pub |
>YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c| Length = 1310 Score = 32.7 bits (73), Expect = 0.81 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 8/133 (6%) Frame = -1 Query: 566 ELLAAYIGGKNKTLDA----KTKAECTKALKEGDELMNAGRLKQALPYYEKVMQAADFK- 402 +LL A+ G K +D K+K ECT AL + N +K L ++ + A D Sbjct: 30 QLLQAFQAGDIKQVDNLLHNKSKDECTHALFISIQCANVQMVKHILSVFDVDVNAYDKNK 89 Query: 401 -TELH--GMAALQWSICLDSLCRSKEAMGMYSKLKYHPNDRVSKKAKMFMFSFQAADFLK 231 T LH MA Q + EA+ ++ + Y+ + +KKA S Q DF+K Sbjct: 90 NTPLHLAAMAGRQDIV---------EALLLHPDINYNLVNANNKKAYQVATSPQLMDFMK 140 Query: 230 VDGVPVPRNTGYE 192 V + T E Sbjct: 141 GFYVTYTKETARE 153
>NLAL2_ARATH (Q9FK53) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 2 Length = 189 Score = 32.7 bits (73), Expect = 0.81 Identities = 22/66 (33%), Positives = 28/66 (42%) Frame = -3 Query: 363 LSRFTLQVQGSHGHV*QAEIPPKRSSQQEGKNVHVQLSGGGLPEGRWRAGAPQHGLRGVL 184 LSRF Q +G G + +PP+ G+ G G P G R P+ G RG Sbjct: 127 LSRFLPQPKGQSGGRGEGRVPPRGRGPPRGRG---NFRGRGAPRGASRGFQPRGGPRGGF 183 Query: 183 RPVRRA 166 R RA Sbjct: 184 RGRGRA 189
>PMA1_KLULA (P49380) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 899 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -1 Query: 359 LDSLCRSKEAMGMYSKLKYHPNDRVSKKAKMFMFSFQAADFLKVDGVPV 213 L S R+K A+ Y L++HP D VSKK + S + + V G P+ Sbjct: 411 LISYPRAKAALTKYKLLEFHPFDPVSKKVTAIVESPEGERIICVKGAPL 459
>PMA1_AJECA (Q07421) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 916 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -1 Query: 344 RSKEAMGMYSKLKYHPNDRVSKKAKMFMFSFQAADFLKVDGVPV 213 R+K + Y L++HP D VSKK + S Q V G P+ Sbjct: 431 RAKSVLTQYKVLEFHPFDPVSKKVSAVVLSPQGERITCVKGAPL 474
>PMA2_YEAST (P19657) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = -1 Query: 344 RSKEAMGMYSKLKYHPNDRVSKKAKMFMFSFQAADFLKVDGVPV 213 ++K+A+ Y L++HP D VSKK + S + + V G P+ Sbjct: 464 KAKDALTKYKVLEFHPFDPVSKKVTAVVESPEGERIVCVKGAPL 507
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -3 Query: 366 HLSRFTLQVQGSHGHV*QAEIPPKRSSQQEGKNVHVQLSGGGLPEG--RWR 220 H++R LQV G G + ++ P+R+ EG+ V + G+P WR Sbjct: 1941 HVARAMLQVHGGSGP--RVQVSPERTQVHEGRTVRLYCRAAGVPSASITWR 1989
>PMA1_YEAST (P05030) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 918 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = -1 Query: 344 RSKEAMGMYSKLKYHPNDRVSKKAKMFMFSFQAADFLKVDGVPV 213 ++K+A+ Y L++HP D VSKK + S + + V G P+ Sbjct: 435 KAKDALTKYKVLEFHPFDPVSKKVTAVVESPEGERIVCVKGAPL 478
>PMA1_NEUCR (P07038) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 920 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -1 Query: 344 RSKEAMGMYSKLKYHPNDRVSKKAKMFMFSFQAADFLKVDGVPV 213 R+K + Y L++HP D VSKK + S Q V G P+ Sbjct: 435 RAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPL 478
>DNAJ_GEOKA (Q5KWZ8) Chaperone protein dnaJ| Length = 382 Score = 30.8 bits (68), Expect = 3.1 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Frame = -3 Query: 348 LQVQGSHGHV*QAEIPPKRSSQQEGKNVHVQLSGGGLPEGRWRAGAPQHGLRGVLRPVRR 169 ++V HGHV + +IP + Q G +L G G+P R QH + V+ P + Sbjct: 290 IEVPTLHGHV-KLKIP---AGTQTG--TRFRLKGKGVPNVRGYGQGDQHVIVRVVTPTKL 343 Query: 168 AE---ELLREPGRARGGDWADRPLHG 100 E +LLRE R G D P HG Sbjct: 344 TEKQKQLLREFERLGGDTMHDGP-HG 368
>PMA1_ZYGRO (P24545) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 920 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 344 RSKEAMGMYSKLKYHPNDRVSKKAKMFMFSFQAADFLKVDGVPV 213 ++K A+ Y L++HP D VSKK + S + + V G P+ Sbjct: 437 KAKGALTKYKVLEFHPFDPVSKKVTAVVESPEGERIICVKGAPL 480
>HIRL_SCHPO (P87314) Histone transcription regulator 1 homolog| Length = 932 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +3 Query: 414 SLHHFFIIRQSLFQPSSIHKLVTFLQCLGALCLCFCIECLVFSTNI 551 SLH + + L P I +FL C A LC +V++ N+ Sbjct: 656 SLHLYSLTGSRLLPPIMIESKASFLHCNNAYLLCISSSGMVYAWNV 701
>K1PF_BACSU (O31714) 1-phosphofructokinase (EC 2.7.1.56) (Fructose 1-phosphate| kinase) Length = 303 Score = 29.3 bits (64), Expect = 8.9 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Frame = -1 Query: 548 IGGKNKTL---DAKTKAECTKALKEGDELMNAGRLKQALPY--YEKVMQA 414 I G+ T+ D K E ++L+EGD ++ AG + +LP+ YEK+ +A Sbjct: 101 INGQGPTISDEDFKAFLEQFQSLQEGDIVVLAGSIPSSLPHDTYEKIAEA 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,215,130 Number of Sequences: 219361 Number of extensions: 1776937 Number of successful extensions: 5273 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5269 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
