ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full i... 500 e-138
2ref|XM_470138.1| Oryza sativa (japonica cultivar-group), mRNA 103 6e-19
3dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 6e-19
4dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 6e-19
5gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 96 1e-16
6ref|XM_470137.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 3e-11
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 78 3e-11
10ref|XM_473455.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
11emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing f... 74 5e-10
12dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
13gb|AY112267.1| Zea mays CL5157_2 mRNA sequence 74 5e-10
14gb|AY104025.1| Zea mays PCO095832 mRNA sequence 74 5e-10
15emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing ... 72 2e-09
16emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing ... 72 2e-09
17gb|BT016543.1| Zea mays clone Contig376 mRNA sequence 64 5e-07
18gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence 64 5e-07
19gb|AY103749.1| Zea mays PCO115125 mRNA sequence 64 5e-07
20emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
22ref|XM_478113.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
24dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
25dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
27dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
28dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
29gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCO... 48 0.031
30gb|AY109068.1| Zea mays PCO068743 mRNA sequence 46 0.12
31gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.48
32gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete seq... 44 0.48
33gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, com... 42 1.9
34ref|NM_173884.2| Bos taurus tyrosine hydroxylase (TH), mRNA 40 7.4
35gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, compl... 40 7.4
36gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, co... 40 7.4
37gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, co... 40 7.4
38dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 7.4
39gb|AC068907.53| Mus musculus strain C57BL/6J clone rp23-347f7 ma... 40 7.4
40gb|AF195612.1|AF195612 Lophopyrum elongatum actin depolymerizati... 40 7.4
41gb|AF196350.1|AF196350 Lophopyrum elongatum actin depolymerizati... 40 7.4
42gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 7.4
43gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 7.4
44emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on ch... 40 7.4
45emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, comp... 40 7.4
46emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, ... 40 7.4
47gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, comp... 40 7.4
48gb|M36705.1|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete... 40 7.4
49gb|M36794.1|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds 40 7.4 
>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA
           sequence
          Length = 2114

 Score =  500 bits (252), Expect = e-138
 Identities = 291/304 (95%)
 Strand = Plus / Plus

                                                                       
Query: 246 tagtgtgcgcgctccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatc 305
           ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 288 tagtgcgcgcgctccttgatcacgtcgaggctcatttcgctggggtcggtggcctgcatc 347

                                                                       
Query: 306 tcgatctggatgccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatc 365
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 tcgatctggatgccgtccagggtcctcttgaacttctcgttggtgctcgcgtacgtcatc 407

                                                                       
Query: 366 ttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctttggc 425
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttgctcctcacctttgccgtgtcgggggaccagaagatatagaagatcctgctctttggc 467

                                                                       
Query: 426 acatcctccggggtggtgaagtcgaagtcaaacactgcgaatcggcagtcgttttcaggg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 468 acatcctccggggtggtgaagtcgaagtcaaacactgcgaatcggcagtcgttctcaggg 527

                                                                       
Query: 486 agggtcttggtgaaatcctcataggtggcatcgcgctgcccggtttggtccacaatgacc 545
           |||||||||||||| ||||||||||| || || |||| ||| ||||||||||||||||||
Sbjct: 528 agggtcttggtgaagtcctcataggttgcctcacgctccccagtttggtccacaatgacc 587

               
Query: 546 tcct 549
           ||||
Sbjct: 588 tcct 591



 Score =  145 bits (73), Expect = 2e-31
 Identities = 76/77 (98%)
 Strand = Plus / Plus

                                                                       
Query: 104 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 237

                            
Query: 164 atctataattgacataa 180
           ||||||| |||||||||
Sbjct: 238 atctatatttgacataa 254



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 55/64 (85%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagcagcataacgtcccggcatataaatgggcagcggaagaaggaacggattacatga 60
           ||||||||||||| | |||||||||| ||||||||   ||| ||| ||| ||||||||||
Sbjct: 77  tgcagcagcataagg-cccggcatatcaatgggcacaagaaaaag-aacagattacatga 134

               
Query: 61  taga 64
           ||||
Sbjct: 135 taga 138
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>ref|XM_470138.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 778

 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                       
Query: 362 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 421
           ||||||||||||||| |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 438 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 379

                       
Query: 422 tggcacatcctc 433
           ||||||||||||
Sbjct: 378 tggcacatcctc 367
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>dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B04, full
            insert sequence
          Length = 2390

 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                        
Query: 362  catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 421
            ||||||||||||||| |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 2047 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 1988

                        
Query: 422  tggcacatcctc 433
            ||||||||||||
Sbjct: 1987 tggcacatcctc 1976
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>dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H02, full
           insert sequence
          Length = 758

 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                       
Query: 362 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 421
           ||||||||||||||| |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 420 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 361

                       
Query: 422 tggcacatcctc 433
           ||||||||||||
Sbjct: 360 tggcacatcctc 349
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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
              hypothetical protein, putative NAM protein, putative
              cis-zeatin O-glucosyltransferases, putative small nuclear
              ribonucleoprotein, putative cis-zeatin
              O-glucosyltransferase, putative glutathione peroxidase,
              putative copper-exporting ATPases, putative
              serine/threonine dehydratase, and putative actin
              depolymerizing factor genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 157237

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                          
Query: 269    gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 328
              ||||| ||| || |||||||||||||||||||||| ||| | |||||||||||||||   
Sbjct: 148416 gtccatgctcatctcgctggggtcggtggcctgcagctccacctggatgccgtccagctc 148357

                                                                          
Query: 329    cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 388
              ||||||||||   || |||| ||| ||||||  |||||||||||||||||| | ||||||
Sbjct: 148356 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgaggtgtc 148297

                      
Query: 389    tggggacc 396
               |||||||
Sbjct: 148296 cggggacc 148289
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>ref|XM_470137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 703

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                       
Query: 258 tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 317
           ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 533 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 474

                                                                      
Query: 318 ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 376
           ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 473 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 415
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                            
Query: 258      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 317
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34127301 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34127242

                                                                           
Query: 318      ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 376
                ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34127241 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34127183



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 394      accagaagatatagaagatcctgctctttggcacatcctc 433
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 34129842 accataagatatagaatatcctgctctttggcacatcctc 34129803



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 362      catcttgctcctcacctttgcggtgtctggggacc 396
                ||||||||||||||| |||||  ||||||||||||
Sbjct: 34129963 catcttgctcctcacttttgcattgtctggggacc 34129929
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                            
Query: 258      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 317
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34217773 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34217714

                                                                           
Query: 318      ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 376
                ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34217713 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34217655



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 394      accagaagatatagaagatcctgctctttggcacatcctc 433
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 34220314 accataagatatagaatatcctgctctttggcacatcctc 34220275



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 362      catcttgctcctcacctttgcggtgtctggggacc 396
                ||||||||||||||| |||||  ||||||||||||
Sbjct: 34220435 catcttgctcctcacttttgcattgtctggggacc 34220401
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                         
Query: 258   tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 317
             ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 91113 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 91054

                                                                        
Query: 318   ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 376
             ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 91053 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 90995



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 394   accagaagatatagaagatcctgctctttggcacatcctc 433
             |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 93654 accataagatatagaatatcctgctctttggcacatcctc 93615



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 362   catcttgctcctcacctttgcggtgtctggggacc 396
             ||||||||||||||| |||||  ||||||||||||
Sbjct: 93775 catcttgctcctcacttttgcattgtctggggacc 93741
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>ref|XM_473455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 124/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 269 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 328
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 396 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 337

                                                                       
Query: 329 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 388
           ||||||||||   || |||| ||| ||||||  |||||||||||||||||| |  |||||
Sbjct: 336 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgacgtgtc 277

                                            
Query: 389 tggggaccagaagatatagaagatcctgctctt 421
            || |||||| ||||  |||||||| |||||||
Sbjct: 276 cggcgaccaggagatgaagaagatcttgctctt 244
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>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor
          Length = 589

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 273 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 332
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 474 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 415

                                                    
Query: 333 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 373
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 414 ctgaacctgtccttggagctggcgtacagcatcttgctcct 374
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>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full
           insert sequence
          Length = 778

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 124/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 269 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 328
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 482 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 423

                                                                       
Query: 329 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 388
           ||||||||||   || |||| ||| ||||||  |||||||||||||||||| |  |||||
Sbjct: 422 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgacgtgtc 363

                                            
Query: 389 tggggaccagaagatatagaagatcctgctctt 421
            || |||||| ||||  |||||||| |||||||
Sbjct: 362 cggcgaccaggagatgaagaagatcttgctctt 330
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>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence
          Length = 779

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 124/153 (81%)
 Strand = Plus / Plus

                                                                       
Query: 269 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 328
           ||||| ||| || |||||||||||||||||||||| ||| | ||||||||| |||||   
Sbjct: 421 gtccatgctcatctcgctggggtcggtggcctgcagctccagctggatgccctccagctc 480

                                                                       
Query: 329 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 388
           ||||||||||   || |||| ||| |||||   |||||||||||| ||| | | ||||||
Sbjct: 481 cctcttgaaccggtccttggagctcgcgtaaagcatcttgctcctgaccctcgaggtgtc 540

                                            
Query: 389 tggggaccagaagatatagaagatcctgctctt 421
            ||||||||| ||||  | |||||| |||||||
Sbjct: 541 cggggaccaggagatgaacaagatcttgctctt 573
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>gb|AY104025.1| Zea mays PCO095832 mRNA sequence
          Length = 894

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 273 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 332
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 460 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 401

                                                    
Query: 333 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 373
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 400 ctgaacctgtccttggagctggcgtacagcatcttgctcct 360
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>emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing factor
          Length = 801

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 330 ctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtct 389
           |||||||| |||| ||| | |||||||||   |||||||||| ||||||| |||| |  |
Sbjct: 479 ctcttgaatttctggtttgagcttgcgtaaagcatcttgctcttcaccttggcggaggat 420

                                           
Query: 390 ggggaccagaagatatagaagatcctgctctt 421
           |||||||| | |||||||||||||||||||||
Sbjct: 419 ggggaccataggatatagaagatcctgctctt 388
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>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor
          Length = 546

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 273 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 332
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 411 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 352

                                                   
Query: 333 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcc 372
            ||||| | || |||| ||| ||||||  |||||||||||
Sbjct: 351 ctgaacctgtccttggagctggcgtacagcatcttgctcc 312
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>gb|BT016543.1| Zea mays clone Contig376 mRNA sequence
          Length = 881

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 362 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 421
           |||||||||| ||||||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 473 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 414
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>gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence
          Length = 837

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 362 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 421
           |||||||||| ||||||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 446 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 387
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>gb|AY103749.1| Zea mays PCO115125 mRNA sequence
          Length = 965

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 362 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 421
           |||||||||| ||||||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 496 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 437
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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                         
Query: 269   gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 328
             ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 61399 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 61458

                                                                
Query: 329   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 379
             ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 61459 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 61509
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 269      gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 328
                ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 27792729 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 27792788

                                                                   
Query: 329      cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 379
                ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 27792789 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 27792839
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>ref|XM_478113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 273 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 332
           ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 333 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 373
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                            
Query: 273      aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 332
                ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 17688290 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 17688231

                                                         
Query: 333      ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 373
                 ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 17688230 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 17688190
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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                         
Query: 273   aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 332
             ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 92323 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 92264

                                                      
Query: 333   ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 373
              ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 92263 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 92223
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>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full
           insert sequence
          Length = 884

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 273 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 332
           ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 333 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 373
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                            
Query: 288      gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 347
                ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 26938807 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 26938866

                                              
Query: 348      gtgcttgcgtacgtcatcttgctcctcacc 377
                | ||| || |||  ||||||||||||||||
Sbjct: 26938867 gagctagcatacagcatcttgctcctcacc 26938896
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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1001_D02
          Length = 129081

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                          
Query: 288    gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 347
              ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 117350 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 117409

                                            
Query: 348    gtgcttgcgtacgtcatcttgctcctcacc 377
              | ||| || |||  ||||||||||||||||
Sbjct: 117410 gagctagcatacagcatcttgctcctcacc 117439
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>dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full
           insert sequence
          Length = 914

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 288 gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 347
           ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 506 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 447

                                         
Query: 348 gtgcttgcgtacgtcatcttgctcctcacc 377
           | ||| || |||  ||||||||||||||||
Sbjct: 446 gagctagcatacagcatcttgctcctcacc 417
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>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA,
           complete cds
          Length = 648

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 282 tcgctggggtcggtggcctgcatctcgatctggatgccgtccag 325
           ||||||| ||||||||||||||  |||||||| | |||||||||
Sbjct: 470 tcgctggcgtcggtggcctgcacgtcgatctgcacgccgtccag 427
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>gb|AY109068.1| Zea mays PCO068743 mRNA sequence
          Length = 731

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                       
Query: 290 gtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttggt 349
           |||||||||||| |  || | ||| |||||||||||   || ||||||| |||| |||| 
Sbjct: 502 gtcggtggcctggagatccacctgaatgccgtccagctcccgcttgaacctctccttgga 443

                                      
Query: 350 gcttgcgtacgtcatcttgctcctcac 376
           ||| |||||  ||||||||||||||||
Sbjct: 442 gctggcgtagatcatcttgctcctcac 416
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 269     gtccaggctgatttcgctggggtcgg 294
               |||| |||||||||||||||||||||
Sbjct: 4866116 gtcccggctgatttcgctggggtcgg 4866091
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>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 329   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgc 382
             |||||||||| | || ||||||||||| ||  |||||||||| |||||| ||||
Sbjct: 67112 cctcttgaacctttctttggtgcttgcataaatcatcttgcttctcacccttgc 67059
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>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence
          Length = 180645

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 323    cagggtcctcttgaacttctc 343
              |||||||||||||||||||||
Sbjct: 138047 cagggtcctcttgaacttctc 138067
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>ref|NM_173884.2| Bos taurus tyrosine hydroxylase (TH), mRNA
          Length = 1706

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 296  ggcctgcatctcgatctggatgccgtccaggg 327
            |||||||||||||  ||||| |||||||||||
Sbjct: 1464 ggcctgcatctcgtcctggacgccgtccaggg 1433
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>gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    aaatcctcataggtggcatc 517
              ||||||||||||||||||||
Sbjct: 129508 aaatcctcataggtggcatc 129527
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>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ctataattgacataataaat 185
              ||||||||||||||||||||
Sbjct: 200019 ctataattgacataataaat 200000
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>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence
          Length = 170969

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    ctataattgacataataaat 185
              ||||||||||||||||||||
Sbjct: 127777 ctataattgacataataaat 127796
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 422     tggcacatcctccggggtgg 441
               ||||||||||||||||||||
Sbjct: 5583257 tggcacatcctccggggtgg 5583276
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>gb|AC068907.53| Mus musculus strain C57BL/6J clone rp23-347f7 map 13, complete sequence
          Length = 232472

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   aaatcctcataggtggcatc 517
             ||||||||||||||||||||
Sbjct: 51767 aaatcctcataggtggcatc 51786
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>gb|AF195612.1|AF195612 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1349

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 282 tcgctggggtcggtggcctgcatctcgatctggatgccgtccag 325
           ||||||| ||||||||||||||  ||||| || | |||||||||
Sbjct: 734 tcgctggcgtcggtggcctgcacgtcgatttgcacgccgtccag 691
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>gb|AF196350.1|AF196350 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1013

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 282 tcgctggggtcggtggcctgcatctcgatctggatgccgtccag 325
           ||||||| ||||||||||||||  ||||| || | |||||||||
Sbjct: 734 tcgctggcgtcggtggcctgcacgtcgatttgcacgccgtccag 691
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>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    aaatctataattgacataataaat 185
              |||||||||||||||||| |||||
Sbjct: 150960 aaatctataattgacatactaaat 150937
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 162     aaatctataattgacataataaat 185
               |||||||||||||| |||||||||
Sbjct: 2915373 aaatctataattgaaataataaat 2915396
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>emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on chromosome X, complete
             sequence
          Length = 160230

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   caaatctataattgacataa 180
             ||||||||||||||||||||
Sbjct: 31926 caaatctataattgacataa 31945
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>emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, complete sequence
          Length = 246777

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   ttggatggatggttggtttg 239
             ||||||||||||||||||||
Sbjct: 93043 ttggatggatggttggtttg 93024
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>emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, complete sequence
          Length = 175575

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tggatggatggttggtttgc 240
              ||||||||||||||||||||
Sbjct: 130295 tggatggatggttggtttgc 130314
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>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   ctataattgacataataaat 185
             ||||||||||||||||||||
Sbjct: 26898 ctataattgacataataaat 26917
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>gb|M36705.1|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1706

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 296  ggcctgcatctcgatctggatgccgtccaggg 327
            |||||||||||||  ||||| |||||||||||
Sbjct: 1464 ggcctgcatctcgtcctggacgccgtccaggg 1433
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>gb|M36794.1|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1696

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 296  ggcctgcatctcgatctggatgccgtccaggg 327
            |||||||||||||  ||||| |||||||||||
Sbjct: 1460 ggcctgcatctcgtcctggacgccgtccaggg 1429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,043,671
Number of Sequences: 3902068
Number of extensions: 4043671
Number of successful extensions: 69233
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68974
Number of HSP's gapped (non-prelim): 251
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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