Clone Information

BLAST Search Result

Clone Name	rbasd17e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_472380.1\| Oryza sativa (japonica cultivar-group), predic...	394	e-106
2	emb\|AL731639.3\|OSJN00288 Oryza sativa genomic DNA, chromosome 4,...	278	2e-71
3	emb\|AL607005.3\|OSJN00124 Oryza sativa genomic DNA, chromosome 4,...	278	2e-71
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	278	2e-71
5	gb\|AY104266.1\| Zea mays PCO077834 mRNA sequence	52	0.002
6	ref\|NM_112529.2\| Arabidopsis thaliana catalytic/ protein phospha...	46	0.13
7	gb\|BT008864.1\| Arabidopsis thaliana At3g16560 mRNA, complete cds	46	0.13
8	gb\|AY136458.1\| Arabidopsis thaliana expressed protein (At3g16560...	46	0.13
9	dbj\|AB022217.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	46	0.13
10	gb\|AC087213.2\| Rattus norvegicus strain Brown Norway clone RP31-...	42	2.1
11	gb\|AC090444.2\| Rattus norvegicus strain Brown Norway clone RP31-...	42	2.1
12	gb\|AC115816.9\| Mus musculus chromosome 6, clone RP23-432K18, com...	42	2.1
13	gb\|AY528719.1\| Homo sapiens estrogen-related receptor gamma (ESR...	42	2.1
14	emb\|AJ965256.1\| Dehalococcoides sp. CBDB1 complete genome	42	2.1
15	emb\|AL512626.8\| Human DNA sequence from clone RP11-163I12 on chr...	42	2.1
16	emb\|AL391235.4\| Human DNA sequence from clone RP11-320L5 on chro...	42	2.1
17	gb\|AC113633.5\| Rattus norvegicus 4 BAC CH230-350N19 (Children's ...	42	2.1
18	emb\|BX511073.3\| Zebrafish DNA sequence from clone DKEY-245I10 in...	42	2.1
19	emb\|BX890571.10\| Zebrafish DNA sequence from clone CH211-57F7, c...	42	2.1
20	gb\|AF417202.1\|AF417202 Mus musculus strain 129/SvJ chromosome 6 ...	42	2.1
21	gb\|DP000027.1\| Rattus norvegicus target 1 genomic scaffold	42	2.1
22	emb\|BX548076.6\| Zebrafish DNA sequence from clone CH211-154A22 i...	42	2.1
23	emb\|AL935283.16\| Zebrafish DNA sequence from clone CH211-247O1 i...	42	2.1
24	emb\|AL954717.9\| Zebrafish DNA sequence from clone CH211-215E6 in...	42	2.1
25	gb\|AC118646.23\| Mus musculus chromosome 15, clone RP24-116A18, c...	40	8.3
26	gb\|AC092189.3\| Drosophila melanogaster clone BACR34M11, complete...	40	8.3
27	gb\|AC119382.7\| Rattus norvegicus 4 BAC CH230-125G2 (Children's H...	40	8.3
28	gb\|AC183611.2\| Pan troglodytes BAC clone CH251-193J21 from chrom...	40	8.3
29	gb\|AC122397.2\| Mus musculus BAC clone RP24-90D21 from chromosome...	40	8.3
30	ref\|XM_761461.1\| Theileria parva strain Muguga chromosome 1 hypo...	40	8.3
31	gb\|AC004006.1\| Homo sapiens PAC clone RP4-740B21 from 7, complet...	40	8.3
32	emb\|BX005297.22\| Zebrafish DNA sequence from clone CH211-271B8 i...	40	8.3
33	emb\|AL590966.10\| Human DNA sequence from clone RP11-191N8 on chr...	40	8.3
34	emb\|AL391097.13\| Human DNA sequence from clone RP11-15M15 on chr...	40	8.3
35	emb\|AJ250129.2\|LLA250129 Lactococcus lactis argS gene (partial),...	40	8.3
36	gb\|AC104383.4\| Homo sapiens chromosome 11, clone CTD-2381F24, co...	40	8.3
37	gb\|AC053479.8\| Homo sapiens chromosome 8, clone RP11-782A18, com...	40	8.3
38	emb\|BX465211.8\| Zebrafish DNA sequence from clone CH211-142D23 i...	40	8.3
39	gb\|AF312913.1\|AF312913 Homo sapiens chromosome 20 clone h119, co...	40	8.3
40	gb\|AC025519.10\|AC025519 Homo sapiens, clone RP11-484J3, complete...	40	8.3
41	gb\|AC106045.5\| Homo sapiens BAC clone RP11-29H20 from 4, complet...	40	8.3
42	gb\|AC020595.7\| Homo sapiens BAC clone RP11-358M9 from 2, complet...	40	8.3
43	gb\|AF282249.1\|AF282249 Lactococcus lactis subsp. lactis putative...	40	8.3
44	emb\|BX323829.16\| Zebrafish DNA sequence from clone RP71-14B1 in ...	40	8.3
45	gb\|AE003583.3\| Drosophila melanogaster chromosome 2L, section 8 ...	40	8.3
46	emb\|AL139074.2\|CJ11168X1 Campylobacter jejuni subsp. jejuni NCTC...	40	8.3
47	gb\|BC111475.1\| Xenopus laevis cDNA clone MGC:131050 IMAGE:798092...	40	8.3
48	gb\|AC161198.5\| Mus musculus chromosome 15, clone RP23-34E23, com...	40	8.3
49	gb\|AC003055.1\|AC003055 Drosophila melanogaster (P1 DS06332 (D91)...	40	8.3
50	emb\|CR388092.29\| Zebrafish DNA sequence from clone DKEY-285J13 i...	40	8.3
51	dbj\|AP004537.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	40	8.3
52	emb\|AL672228.14\| Mouse DNA sequence from clone RP24-133C15 on ch...	40	8.3

>ref|XM_472380.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1563

 Score =  394 bits (199), Expect = e-106
 Identities = 319/359 (88%)
 Strand = Plus / Minus

                                                                        
Query: 246  ccaaggatgataactatgacagtcacgtcgtcgtggtactttctcctgctcccaacaggt 305
            |||||||||||||| ||||  || || || ||||||||||||||||||||||||||||||
Sbjct: 1523 ccaaggatgataacaatgatggtaacatcatcgtggtactttctcctgctcccaacaggt 1464

                                                                        
Query: 306  atcctcatcaactgttcagctgttaaagctgcttctttggcagctttatgtacaacttgc 365
            ||||||||||| | ||||||||||||||||||||| || || |||||| ||| || ||||
Sbjct: 1463 atcctcatcaattcttcagctgttaaagctgcttccttcgctgctttaagtaaaagttgc 1404

                                                                        
Query: 366  tcgataagatatttcgcaggatcgccagttggattatcatgcataaattgataaaccaac 425
            || || ||||| || |||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1403 tcaatgagatactttgcaggatcaccaattggattatcatgcataaattgataaaccaac 1344

                                                                        
Query: 426  tgaacaacttcatcgttactgaagaaatcaaataagccatcactgccaagcacaacaaac 485
            ||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1343 tgaacaacttcgtcattgctgaagaaatcaaataagccatcactaccaagcacaacaaac 1284

                                                                        
Query: 486  agatcgtcctccgtaaccttgtgactgagtgtgtgtggatttgtatatacgtaaggcgga 545
            | ||| ||||| || || || ||||| | |||||| |||||||| || || |||||||| 
Sbjct: 1283 aaatcatcctctgtgactttatgactaactgtgtgaggatttgtgtacacataaggcggg 1224

                                                                       
Query: 546  ctgcacaaattacgaactcggagaattcccatgagtgcatcattgaactttttctgttt 604
            ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 1223 ctgcacaaattacgaactcggagaattcccatgagtgcatcgttcaacttcttctgttt 1165

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>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02,
           complete sequence
          Length = 112404

 Score =  278 bits (140), Expect = 2e-71
 Identities = 236/268 (88%)
 Strand = Plus / Plus

                                                                       
Query: 334 ctgcttctttggcagctttatgtacaacttgctcgataagatatttcgcaggatcgccag 393
           ||||||| || || |||||| ||| || |||||| || ||||| || |||||||| ||| 
Sbjct: 455 ctgcttccttcgctgctttaagtaaaagttgctcaatgagatactttgcaggatcaccaa 514

                                                                       
Query: 394 ttggattatcatgcataaattgataaaccaactgaacaacttcatcgttactgaagaaat 453
           ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 515 ttggattatcatgcataaattgataaaccaactgaacaacttcgtcattgctgaagaaat 574

                                                                       
Query: 454 caaataagccatcactgccaagcacaacaaacagatcgtcctccgtaaccttgtgactga 513
           |||||||||||||||| |||||||||||||||| ||| ||||| || || || ||||| |
Sbjct: 575 caaataagccatcactaccaagcacaacaaacaaatcatcctctgtgactttatgactaa 634

                                                                       
Query: 514 gtgtgtgtggatttgtatatacgtaaggcggactgcacaaattacgaactcggagaattc 573
            |||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||
Sbjct: 635 ctgtgtgaggatttgtgtacacataaggcgggctgcacaaattacgaactcggagaattc 694

                                       
Query: 574 ccatgagtgcatcattgaactttttctg 601
           ||||||||||||| || ||||| |||||
Sbjct: 695 ccatgagtgcatcgttcaacttcttctg 722



 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                       
Query: 246 ccaaggatgataactatgacagtcacgtcgtcgtggtactttctcctgctcccaacaggt 305
           |||||||||||||| ||||  || || || ||||||||||||||||||||||||||||||
Sbjct: 67  ccaaggatgataacaatgatggtaacatcatcgtggtactttctcctgctcccaacaggt 126

                                          
Query: 306 atcctcatcaactgttcagctgttaaagctg 336
           ||||||||||| | |||||||||||||||||
Sbjct: 127 atcctcatcaattcttcagctgttaaagctg 157

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>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14,
             complete sequence
          Length = 158312

 Score =  278 bits (140), Expect = 2e-71
 Identities = 236/268 (88%)
 Strand = Plus / Plus

                                                                         
Query: 334   ctgcttctttggcagctttatgtacaacttgctcgataagatatttcgcaggatcgccag 393
             ||||||| || || |||||| ||| || |||||| || ||||| || |||||||| ||| 
Sbjct: 93214 ctgcttccttcgctgctttaagtaaaagttgctcaatgagatactttgcaggatcaccaa 93273

                                                                         
Query: 394   ttggattatcatgcataaattgataaaccaactgaacaacttcatcgttactgaagaaat 453
             ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 93274 ttggattatcatgcataaattgataaaccaactgaacaacttcgtcattgctgaagaaat 93333

                                                                         
Query: 454   caaataagccatcactgccaagcacaacaaacagatcgtcctccgtaaccttgtgactga 513
             |||||||||||||||| |||||||||||||||| ||| ||||| || || || ||||| |
Sbjct: 93334 caaataagccatcactaccaagcacaacaaacaaatcatcctctgtgactttatgactaa 93393

                                                                         
Query: 514   gtgtgtgtggatttgtatatacgtaaggcggactgcacaaattacgaactcggagaattc 573
              |||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||
Sbjct: 93394 ctgtgtgaggatttgtgtacacataaggcgggctgcacaaattacgaactcggagaattc 93453

                                         
Query: 574   ccatgagtgcatcattgaactttttctg 601
             ||||||||||||| || ||||| |||||
Sbjct: 93454 ccatgagtgcatcgttcaacttcttctg 93481



 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                         
Query: 246   ccaaggatgataactatgacagtcacgtcgtcgtggtactttctcctgctcccaacaggt 305
             |||||||||||||| ||||  || || || ||||||||||||||||||||||||||||||
Sbjct: 92826 ccaaggatgataacaatgatggtaacatcatcgtggtactttctcctgctcccaacaggt 92885

                                            
Query: 306   atcctcatcaactgttcagctgttaaagctg 336
             ||||||||||| | |||||||||||||||||
Sbjct: 92886 atcctcatcaattcttcagctgttaaagctg 92916

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  278 bits (140), Expect = 2e-71
 Identities = 236/268 (88%)
 Strand = Plus / Plus

                                                                            
Query: 334      ctgcttctttggcagctttatgtacaacttgctcgataagatatttcgcaggatcgccag 393
                ||||||| || || |||||| ||| || |||||| || ||||| || |||||||| ||| 
Sbjct: 20030551 ctgcttccttcgctgctttaagtaaaagttgctcaatgagatactttgcaggatcaccaa 20030610

                                                                            
Query: 394      ttggattatcatgcataaattgataaaccaactgaacaacttcatcgttactgaagaaat 453
                ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 20030611 ttggattatcatgcataaattgataaaccaactgaacaacttcgtcattgctgaagaaat 20030670

                                                                            
Query: 454      caaataagccatcactgccaagcacaacaaacagatcgtcctccgtaaccttgtgactga 513
                |||||||||||||||| |||||||||||||||| ||| ||||| || || || ||||| |
Sbjct: 20030671 caaataagccatcactaccaagcacaacaaacaaatcatcctctgtgactttatgactaa 20030730

                                                                            
Query: 514      gtgtgtgtggatttgtatatacgtaaggcggactgcacaaattacgaactcggagaattc 573
                 |||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||
Sbjct: 20030731 ctgtgtgaggatttgtgtacacataaggcgggctgcacaaattacgaactcggagaattc 20030790

                                            
Query: 574      ccatgagtgcatcattgaactttttctg 601
                ||||||||||||| || ||||| |||||
Sbjct: 20030791 ccatgagtgcatcgttcaacttcttctg 20030818



 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                            
Query: 246      ccaaggatgataactatgacagtcacgtcgtcgtggtactttctcctgctcccaacaggt 305
                |||||||||||||| ||||  || || || ||||||||||||||||||||||||||||||
Sbjct: 20030163 ccaaggatgataacaatgatggtaacatcatcgtggtactttctcctgctcccaacaggt 20030222

                                               
Query: 306      atcctcatcaactgttcagctgttaaagctg 336
                ||||||||||| | |||||||||||||||||
Sbjct: 20030223 atcctcatcaattcttcagctgttaaagctg 20030253

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>gb|AY104266.1| Zea mays PCO077834 mRNA sequence
          Length = 1016

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 131/164 (79%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                        
Query: 441  ttactgaagaaatcaaataagccatcact-gccaagcacaacaaacagatcgtcctccgt 499
            |||||||||||||||||||  |||||| |  |||||||| || |||| ||| || || ||
Sbjct: 1007 ttactgaagaaatcaaatagnccatcattacccaagcacnacgaacaaatcatcatctgt 948

                                                                        
Query: 500  aac-cttgtgactgagtgtgtgtggatttgtatatacgtaaggcggactgc-acaaatta 557
             ||  |||||| | | ||||||||||||||| || || || || || ||||  |||||  
Sbjct: 947  nacttttgtgantcaatgtgtgtggatttgtgtaaacatatggagggctgcttcaaatcg 888

                                                        
Query: 558  cgaactcggagaattcccatgagtgcatcattgaactttttctg 601
            || ||||| || || |||||||||||||||||| |||| |||||
Sbjct: 887  cggactcgtagnatgcccatgagtgcatcattgnacttcttctg 844

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>ref|NM_112529.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT3G16560
            mRNA, complete cds
          Length = 2166

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 555  ttacgaactcggagaattcccatgagtgcatcatt 589
            |||||||| ||||| || |||||||||||||||||
Sbjct: 1362 ttacgaacgcggaggatccccatgagtgcatcatt 1328

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>gb|BT008864.1| Arabidopsis thaliana At3g16560 mRNA, complete cds
          Length = 1482

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 555  ttacgaactcggagaattcccatgagtgcatcatt 589
            |||||||| ||||| || |||||||||||||||||
Sbjct: 1133 ttacgaacgcggaggatccccatgagtgcatcatt 1099

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>gb|AY136458.1| Arabidopsis thaliana expressed protein (At3g16560) mRNA, complete cds
          Length = 2165

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 555  ttacgaactcggagaattcccatgagtgcatcatt 589
            |||||||| ||||| || |||||||||||||||||
Sbjct: 1362 ttacgaacgcggaggatccccatgagtgcatcatt 1328

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>dbj|AB022217.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGL6
          Length = 79459

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 555  ttacgaactcggagaattcccatgagtgcatcatt 589
            |||||||| ||||| || |||||||||||||||||
Sbjct: 2539 ttacgaacgcggaggatccccatgagtgcatcatt 2573

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>gb|AC087213.2| Rattus norvegicus strain Brown Norway clone RP31-422M21, complete
             sequence
          Length = 64575

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 586   cattgaactttttctgtttaa 606
             |||||||||||||||||||||
Sbjct: 59157 cattgaactttttctgtttaa 59177

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>gb|AC090444.2| Rattus norvegicus strain Brown Norway clone RP31-210K23, complete
             sequence
          Length = 37897

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 586   cattgaactttttctgtttaa 606
             |||||||||||||||||||||
Sbjct: 18220 cattgaactttttctgtttaa 18240

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>gb|AC115816.9| Mus musculus chromosome 6, clone RP23-432K18, complete sequence
          Length = 229261

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 441    ttactgaagaaatcaaataag 461
              |||||||||||||||||||||
Sbjct: 137123 ttactgaagaaatcaaataag 137103

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>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds
          Length = 590284

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     aaaatttccaaaggatataca 94
              |||||||||||||||||||||
Sbjct: 145026 aaaatttccaaaggatataca 145006

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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 389    gccagttggattatcatgcataaat 413
              |||||||||||||||| ||||||||
Sbjct: 849579 gccagttggattatcaggcataaat 849555

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>emb|AL512626.8| Human DNA sequence from clone RP11-163I12 on chromosome 1 Contains part
             of the ESRRG gene for  estrogen-related receptor gamma,
             complete sequence
          Length = 106859

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    aaaatttccaaaggatataca 94
             |||||||||||||||||||||
Sbjct: 81455 aaaatttccaaaggatataca 81475

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>emb|AL391235.4| Human DNA sequence from clone RP11-320L5 on chromosome 1 Contains the
             5' end of the VAV3 gene for vav 3 oncogene, the 5' end of
             a novel gene and a CpG island, complete sequence
          Length = 74581

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 328   ttaaagctgcttctttggcagcttt 352
             |||||||||||||||||| ||||||
Sbjct: 57955 ttaaagctgcttctttggaagcttt 57931

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>gb|AC113633.5| Rattus norvegicus 4 BAC CH230-350N19 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 133392

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 586    cattgaactttttctgtttaa 606
              |||||||||||||||||||||
Sbjct: 118144 cattgaactttttctgtttaa 118124

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>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8,
              complete sequence
          Length = 218866

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 505    tgtgactgagtgtgtgtggat 525
              |||||||||||||||||||||
Sbjct: 179788 tgtgactgagtgtgtgtggat 179768

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>emb|BX890571.10| Zebrafish DNA sequence from clone CH211-57F7, complete sequence
          Length = 167315

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 505   tgtgactgagtgtgtgtggat 525
             |||||||||||||||||||||
Sbjct: 97272 tgtgactgagtgtgtgtggat 97252

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>gb|AF417202.1|AF417202 Mus musculus strain 129/SvJ chromosome 6 map 6F1-F2 sequence
          Length = 17529

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 441  ttactgaagaaatcaaataag 461
            |||||||||||||||||||||
Sbjct: 6804 ttactgaagaaatcaaataag 6824

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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 586     cattgaactttttctgtttaa 606
               |||||||||||||||||||||
Sbjct: 1192642 cattgaactttttctgtttaa 1192662

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>emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 in linkage group 15,
              complete sequence
          Length = 175161

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 505    tgtgactgagtgtgtgtggat 525
              |||||||||||||||||||||
Sbjct: 109253 tgtgactgagtgtgtgtggat 109273



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 505   tgtgactgagtgtgtgtggat 525
             |||||||||||||||||||||
Sbjct: 95941 tgtgactgagtgtgtgtggat 95961

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>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7,
             complete sequence
          Length = 197927

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 505   tgtgactgagtgtgtgtggat 525
             |||||||||||||||||||||
Sbjct: 83672 tgtgactgagtgtgtgtggat 83692

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>emb|AL954717.9| Zebrafish DNA sequence from clone CH211-215E6 in linkage group 24,
              complete sequence
          Length = 211099

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 505    tgtgactgagtgtgtgtggatttgt 529
              |||||||||||||||||| ||||||
Sbjct: 185048 tgtgactgagtgtgtgtgaatttgt 185024

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>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence
          Length = 205272

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    tatacacacattattatgtt 108
             ||||||||||||||||||||
Sbjct: 74200 tatacacacattattatgtt 74181

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>gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete sequence
          Length = 168540

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 511   tgagtgtgtgtggatttgta 530
             ||||||||||||||||||||
Sbjct: 92672 tgagtgtgtgtggatttgta 92691

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>gb|AC119382.7| Rattus norvegicus 4 BAC CH230-125G2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 189442

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   gaagaaatcaaataagccat 465
             ||||||||||||||||||||
Sbjct: 81226 gaagaaatcaaataagccat 81245

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>gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chromosome 4, complete
              sequence
          Length = 166748

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     tatacacacattattatgtttatt 112
              |||||||||| |||||||||||||
Sbjct: 143505 tatacacacagtattatgtttatt 143482

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>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence
          Length = 181742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   aaagatccatgtcctaacac 155
             ||||||||||||||||||||
Sbjct: 71315 aaagatccatgtcctaacac 71334

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>ref|XM_761461.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
           (TP01_1033) partial mRNA
          Length = 1356

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 ttgataaaccaactgaacaa 432
           ||||||||||||||||||||
Sbjct: 719 ttgataaaccaactgaacaa 738

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>gb|AC004006.1| Homo sapiens PAC clone RP4-740B21 from 7, complete sequence
          Length = 119453

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 397   gattatcatgcataaattgataaa 420
             |||||||||||||||||| |||||
Sbjct: 86588 gattatcatgcataaatttataaa 86565

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>emb|BX005297.22| Zebrafish DNA sequence from clone CH211-271B8 in linkage group 3,
             complete sequence
          Length = 156906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 502   ccttgtgactgagtgtgtgtggat 525
             |||||||| |||||||||||||||
Sbjct: 87006 ccttgtgaatgagtgtgtgtggat 87029

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>emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chromosome 1 Contains the
              DUSP10 gene for dual specificity phosphatase 10 (DUSP10), a
              novel gene and a CpG island, complete sequence
          Length = 165588

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     tatacacacattattatgtttatt 112
              |||||||||| |||||||||||||
Sbjct: 128708 tatacacacagtattatgtttatt 128685

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>emb|AL391097.13| Human DNA sequence from clone RP11-15M15 on chromosome 20 Contains
            ESTs, STSs and GSSs, complete sequence
          Length = 125201

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 241  cgttcccaaggatgataactatga 264
            |||||||||||||| |||||||||
Sbjct: 8894 cgttcccaaggatggtaactatga 8917

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>emb|AJ250129.2|LLA250129 Lactococcus lactis argS gene (partial), arcA gene, arcB gene, arcD
            gene, arcC1 gene, arcC2 gene and arcT gene (partial)
          Length = 8222

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 311  catcaactgttcagctgtta 330
            ||||||||||||||||||||
Sbjct: 5391 catcaactgttcagctgtta 5372

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>gb|AC104383.4| Homo sapiens chromosome 11, clone CTD-2381F24, complete sequence
          Length = 143501

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   gccatcactgccaagcacaa 480
             ||||||||||||||||||||
Sbjct: 76298 gccatcactgccaagcacaa 76279

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>gb|AC053479.8| Homo sapiens chromosome 8, clone RP11-782A18, complete sequence
          Length = 133053

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   gctgttaaagctgcttcttt 343
             ||||||||||||||||||||
Sbjct: 11246 gctgttaaagctgcttcttt 11227

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>emb|BX465211.8| Zebrafish DNA sequence from clone CH211-142D23 in linkage group 17,
             complete sequence
          Length = 173690

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   caaggatgataactatgaca 266
             ||||||||||||||||||||
Sbjct: 74502 caaggatgataactatgaca 74483

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>gb|AF312913.1|AF312913 Homo sapiens chromosome 20 clone h119, complete sequence
          Length = 122951

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   cgttcccaaggatgataactatga 264
             |||||||||||||| |||||||||
Sbjct: 11637 cgttcccaaggatggtaactatga 11614

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>gb|AC025519.10|AC025519 Homo sapiens, clone RP11-484J3, complete sequence
          Length = 171464

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   gctgttaaagctgcttcttt 343
             ||||||||||||||||||||
Sbjct: 88348 gctgttaaagctgcttcttt 88329

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>gb|AC106045.5| Homo sapiens BAC clone RP11-29H20 from 4, complete sequence
          Length = 183003

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    ttgtgactgagtgtgtgtgg 523
              ||||||||||||||||||||
Sbjct: 113336 ttgtgactgagtgtgtgtgg 113355

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>gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complete sequence
          Length = 189219

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tactttctcctgctcccaac 301
             ||||||||||||||||||||
Sbjct: 46325 tactttctcctgctcccaac 46306

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>gb|AF282249.1|AF282249 Lactococcus lactis subsp. lactis putative UDP-N-acetyl
            muramate-alanine ligase gene, partial cds; and arginine
            deiminase gene cluster, complete sequence
          Length = 12850

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 311  catcaactgttcagctgtta 330
            ||||||||||||||||||||
Sbjct: 7555 catcaactgttcagctgtta 7536

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>emb|BX323829.16| Zebrafish DNA sequence from clone RP71-14B1 in linkage group 18,
             complete sequence
          Length = 148650

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   gtgactgagtgtgtgtggat 525
             ||||||||||||||||||||
Sbjct: 90642 gtgactgagtgtgtgtggat 90661

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>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete
              sequence
          Length = 303641

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    tgagtgtgtgtggatttgta 530
              ||||||||||||||||||||
Sbjct: 276381 tgagtgtgtgtggatttgta 276400

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>emb|AL139074.2|CJ11168X1 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              1/6
          Length = 314150

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    tgcttctttggcagctttat 354
              ||||||||||||||||||||
Sbjct: 240395 tgcttctttggcagctttat 240414

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>gb|BC111475.1| Xenopus laevis cDNA clone MGC:131050 IMAGE:7980920, complete cds
          Length = 2745

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   atatacacacattattatgtttat 111
            |||||||||||||||||| |||||
Sbjct: 2155 atatacacacattattatatttat 2132

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>gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, complete sequence
          Length = 237801

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tatacacacattattatgtt 108
              ||||||||||||||||||||
Sbjct: 212869 tatacacacattattatgtt 212850

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>gb|AC003055.1|AC003055 Drosophila melanogaster (P1 DS06332 (D91)) DNA sequence, complete
             sequence
          Length = 73076

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 511   tgagtgtgtgtggatttgta 530
             ||||||||||||||||||||
Sbjct: 63083 tgagtgtgtgtggatttgta 63064

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>emb|CR388092.29| Zebrafish DNA sequence from clone DKEY-285J13 in linkage group 1,
             complete sequence
          Length = 161368

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 504   ttgtgactgagtgtgtgtggattt 527
             |||||| |||||||||||||||||
Sbjct: 38987 ttgtgaatgagtgtgtgtggattt 39010

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>dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04C07, TM0098a,
             complete sequence
          Length = 33254

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    cccaaaatttccaaaggata 90
             ||||||||||||||||||||
Sbjct: 30724 cccaaaatttccaaaggata 30705

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>emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on chromosome 11, complete
              sequence
          Length = 162556

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    acaccagaaccctgaaaaag 139
              ||||||||||||||||||||
Sbjct: 123349 acaccagaaccctgaaaaag 123368


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,008,746
Number of Sequences: 3902068
Number of extensions: 6008746
Number of successful extensions: 115427
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115257
Number of HSP's gapped (non-prelim): 169
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result