ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSB3_ORYSA (Q9LST7) Proteasome subunit beta type 3 (EC 3.4.25.1)... 270 3e-72
2PSB3A_ARATH (Q9XI05) Proteasome subunit beta type 3-A (EC 3.4.25... 262 7e-70
3PSB3B_ARATH (O81153) Proteasome subunit beta type 3-B (EC 3.4.25... 254 1e-67
4PSB3_PICMA (O65084) Proteasome subunit beta type 3 (EC 3.4.25.1)... 253 3e-67
5PSB3_SCHPO (Q9Y7T8) Probable proteasome subunit beta type 3 (EC ... 186 7e-47
6PSB3_YEAST (P25451) Proteasome component PUP3 (EC 3.4.25.1) (Mac... 168 1e-41
7PSB3_ONCMY (O73817) Proteasome subunit beta type 3 (EC 3.4.25.1)... 168 1e-41
8PSB3_RAT (P40112) Proteasome subunit beta type 3 (EC 3.4.25.1) (... 162 6e-40
9PSB3_MOUSE (Q9R1P1) Proteasome subunit beta type 3 (EC 3.4.25.1)... 162 8e-40
10PSB3_DROME (Q9XYN7) Proteasome subunit beta type 3 (EC 3.4.25.1)... 160 2e-39
11PSB3_HUMAN (P49720) Proteasome subunit beta type 3 (EC 3.4.25.1)... 160 3e-39
12PSB3_TRYBB (Q9NDA1) Proteasome subunit beta type 3 (EC 3.4.25.1)... 145 1e-34
13PSB3_CAEEL (Q23237) Proteasome subunit beta type 3 (EC 3.4.25.1)... 143 4e-34
14PSB3_GIALA (Q9N9W8) Proteasome subunit beta type 3 (EC 3.4.25.1) 119 1e-26
15PSB3_BOVIN (P33672) Proteasome subunit beta type 3 (EC 3.4.25.1)... 92 1e-18
16PSMB_METJA (Q58634) Proteasome beta subunit precursor (EC 3.4.25... 68 2e-11
17PSMB_ARCFU (Q9P996) Proteasome beta subunit precursor (EC 3.4.25... 67 6e-11
18PSMB_METTH (O27270) Proteasome beta subunit precursor (EC 3.4.25... 59 2e-08
19PSMB_THEAC (P28061) Proteasome beta subunit precursor (EC 3.4.25... 58 3e-08
20PSMB_PYRAB (Q9V0N9) Proteasome beta subunit precursor (EC 3.4.25... 56 1e-07
21PSMB_PYRHO (O50110) Proteasome beta subunit precursor (EC 3.4.25... 53 7e-07
22PSB12_CARAU (Q9IB83) Proteasome subunit beta type 1-B (EC 3.4.25... 53 7e-07
23PSB11_CARAU (Q9IB84) Proteasome subunit beta type 1-A (EC 3.4.25... 53 7e-07
24PSB9_MUSMB (O35522) Proteasome subunit beta type 9 precursor (EC... 53 9e-07
25PSB1_MOUSE (O09061) Proteasome subunit beta type 1 (EC 3.4.25.1)... 52 2e-06
26PSB9_MUSSI (O35524) Proteasome subunit beta type 9 precursor (EC... 51 3e-06
27PSB9_MUSDU (O35521) Proteasome subunit beta type 9 precursor (EC... 51 3e-06
28PSB9_MOUSE (P28076) Proteasome subunit beta type 9 precursor (EC... 51 3e-06
29PSB1_RAT (P18421) Proteasome subunit beta type 1 (EC 3.4.25.1) (... 51 3e-06
30PSB1_HUMAN (P20618) Proteasome subunit beta type 1 (EC 3.4.25.1)... 50 4e-06
31PSB9_RAT (P28077) Proteasome subunit beta type 9 precursor (EC 3... 50 6e-06
32PSB9_HUMAN (P28065) Proteasome subunit beta type 9 precursor (EC... 50 8e-06
33PSB1_ARATH (P42742) Proteasome subunit beta type 1 (EC 3.4.25.1)... 50 8e-06
34PSB1_DROME (P40304) Proteasome subunit beta type 1 (EC 3.4.25.1)... 49 1e-05
35PSB1_ORYSA (O64464) Proteasome subunit beta type 1 (EC 3.4.25.1)... 49 1e-05
36PSB1_PETHY (O82531) Proteasome subunit beta type 1 (EC 3.4.25.1)... 48 2e-05
37PSB8_CANFA (Q5W416) Proteasome subunit beta type 8 precursor (EC... 47 4e-05
38PSB9_MUSPL (O35523) Proteasome subunit beta type 9 precursor (EC... 47 6e-05
39PSB1_SCHPO (Q9UQY2) Probable proteasome subunit beta type 1 (EC ... 46 8e-05
40PSMB_PYRFU (Q8U125) Proteasome beta subunit precursor (EC 3.4.25... 45 2e-04
41PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC... 44 4e-04
42PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 prec... 44 5e-04
43PSB1_YEAST (P23724) Proteasome component C5 (EC 3.4.25.1) (Multi... 44 5e-04
44PSB6_HUMAN (P28072) Proteasome subunit beta type 6 precursor (EC... 42 0.002
45PSB9_ORYLA (Q8UW64) Proteasome subunit beta type 9 precursor (EC... 41 0.003
46PSB8_RAT (P28064) Proteasome subunit beta type 8 precursor (EC 3... 41 0.003
47PSB6_RAT (P28073) Proteasome subunit beta type 6 precursor (EC 3... 40 0.006
48PSB6_MOUSE (Q60692) Proteasome subunit beta type 6 precursor (EC... 40 0.006
49PSB5A_ARATH (O23717) Proteasome subunit beta type 5-A precursor ... 39 0.010
50PSB5B_ARATH (Q9LIP2) Proteasome subunit beta type 5-B precursor ... 39 0.013
51PSB5_CHICK (P34065) Proteasome subunit beta type 5 precursor (EC... 39 0.013
52PSB1_TRYBB (Q9U794) Proteasome subunit beta type 1 (EC 3.4.25.1)... 39 0.013
53PSB8_MOUSE (P28063) Proteasome subunit beta type 8 precursor (EC... 38 0.023
54PSB1_CAEEL (P34286) Proteasome subunit beta type 1 (EC 3.4.25.1)... 38 0.030
55PSB4_DROME (Q9VNA5) Probable proteasome subunit beta type 4 (EC ... 35 0.25
56COQ10_YEAST (Q08058) Coenzyme Q-binding protein COQ10, mitochond... 33 0.95
57ATPD_CAEEL (Q09544) ATP synthase delta chain, mitochondrial prec... 32 1.6
58PSB2_YEAST (P22141) Proteasome component C11 (EC 3.4.25.1) (Macr... 32 2.1
59PSB8_PIG (Q29576) Proteasome subunit beta type 8 (EC 3.4.25.1) (... 31 3.6
60MUC13_MOUSE (P19467) Mucin-13 precursor (Cell surface antigen 11... 30 6.2

>PSB3_ORYSA (Q9LST7) Proteasome subunit beta type 3 (EC 3.4.25.1) (20S|
           proteasome alpha subunit C) (20S proteasome subunit
           beta-3)
          Length = 204

 Score =  270 bits (690), Expect = 3e-72
 Identities = 128/142 (90%), Positives = 139/142 (97%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           LYQRLVF+HKLYQLREERDMKP+TFASLVS++LYEKRFGPYFCQP+IAGLG+D+EPFICT
Sbjct: 63  LYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICT 122

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGW 290
           MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQAL SSVDRDCLSGW
Sbjct: 123 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGW 182

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
           GG+VL+VT TEV+E V+KGRMD
Sbjct: 183 GGFVLLVTPTEVKECVIKGRMD 204



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>PSB3A_ARATH (Q9XI05) Proteasome subunit beta type 3-A (EC 3.4.25.1) (20S|
           proteasome beta subunit C-1) (Proteasome component T)
          Length = 204

 Score =  262 bits (669), Expect = 7e-70
 Identities = 125/142 (88%), Positives = 136/142 (95%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           LYQRLVF+HKLYQLREERDMKPETFASLVS++LYEKRFGPY CQP+IAGLG DD+PFICT
Sbjct: 63  LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICT 122

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGW 290
           MD IGAKELAKDFVVSGTASESLYGACE+MYKP+ME EELFETISQALLSSVDRDCLSGW
Sbjct: 123 MDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGW 182

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
           GG+V IVT TE++ER+LKGRMD
Sbjct: 183 GGHVYIVTPTEIKERILKGRMD 204



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>PSB3B_ARATH (O81153) Proteasome subunit beta type 3-B (EC 3.4.25.1) (20S|
           proteasome beta subunit C-2)
          Length = 204

 Score =  254 bits (650), Expect = 1e-67
 Identities = 121/142 (85%), Positives = 135/142 (95%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           LYQRLVF+HKLYQLREERDMKPETFASLVS++LYEKRFGP+ CQP+IAGLG D++PFICT
Sbjct: 63  LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICT 122

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGW 290
           MD IGAKELAKDFVVSGTASESLYGACE+M+KP+ME EELFETISQALLSSVDRDCLSGW
Sbjct: 123 MDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGW 182

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
           GG+V +VT  EV+ER+LKGRMD
Sbjct: 183 GGHVYVVTPKEVKERILKGRMD 204



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>PSB3_PICMA (O65084) Proteasome subunit beta type 3 (EC 3.4.25.1) (20S|
           proteasome alpha subunit C) (20S proteasome subunit
           beta-3)
          Length = 204

 Score =  253 bits (647), Expect = 3e-67
 Identities = 118/142 (83%), Positives = 134/142 (94%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           LYQR  F+HKLYQLREER+M+PETFASLVS++LYEKRFGPYFCQP+IAGLG+DD+PFICT
Sbjct: 63  LYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICT 122

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGW 290
           MD IGAKELAKDFVV+GTA+ESLYGACESMYKP+MEPEELFETISQALLSS+DRDCLSGW
Sbjct: 123 MDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGW 182

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
           GG+V +V+  +V ER LKGRMD
Sbjct: 183 GGHVYVVSPNQVIERTLKGRMD 204



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>PSB3_SCHPO (Q9Y7T8) Probable proteasome subunit beta type 3 (EC 3.4.25.1)|
          Length = 204

 Score =  186 bits (471), Expect = 7e-47
 Identities = 84/142 (59%), Positives = 113/142 (79%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           LY+   +K  LY+ REER ++P+TFA+LVSS LYEKRFGPYF  P++AG+  D+ PFIC 
Sbjct: 63  LYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICG 122

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGW 290
            D IG  + A+DF+VSGTA+E LYG CES+Y+PN+EP++LFETISQALL++ DRDC+SGW
Sbjct: 123 FDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGW 182

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
           G  V ++TA +  +R++KGR D
Sbjct: 183 GCVVYVITADKCIKRLVKGRQD 204



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>PSB3_YEAST (P25451) Proteasome component PUP3 (EC 3.4.25.1) (Macropain subunit|
           PUP3) (Multicatalytic endopeptidase complex subunit
           PUP3)
          Length = 205

 Score =  168 bits (426), Expect = 1e-41
 Identities = 81/137 (59%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
 Frame = -1

Query: 631 FKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLG-QDDEPFICTMDCIG 455
           +K  LY+L+EER ++PETF  LVSS LYE+RFGPYF  P++AG+  +  +PFI   D IG
Sbjct: 69  YKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIG 128

Query: 454 AKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVL 275
             + AKDF+VSGTAS+ L+G CES+Y+PN+EPE+LFETISQALL++ DRD LSGWG  V 
Sbjct: 129 CIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVY 188

Query: 274 IVTATEVQERVLKGRMD 224
           I+   EV +R LK R D
Sbjct: 189 IIKKDEVVKRYLKMRQD 205



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>PSB3_ONCMY (O73817) Proteasome subunit beta type 3 (EC 3.4.25.1) (Proteasome|
           theta chain) (Proteasome chain 13) (Proteasome component
           C10-II)
          Length = 205

 Score =  168 bits (426), Expect = 1e-41
 Identities = 79/141 (56%), Positives = 109/141 (77%), Gaps = 1/141 (0%)
 Frame = -1

Query: 643 QRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDD-EPFICTM 467
           QRL F+  LY+L+E R +KP+TF S+VS++LYE+RFGPY+ +P+IAGL     EPFIC++
Sbjct: 65  QRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSL 124

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWG 287
           D IG   + +DFVVSGT SE +YG CES+++P+MEPE+LFETISQA+L++VDRD +SG G
Sbjct: 125 DLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMG 184

Query: 286 GYVLIVTATEVQERVLKGRMD 224
             V ++   ++  R LK RMD
Sbjct: 185 VVVQVIEKDKITTRTLKARMD 205



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>PSB3_RAT (P40112) Proteasome subunit beta type 3 (EC 3.4.25.1) (Proteasome|
           theta chain) (Proteasome chain 13) (Proteasome component
           C10-II)
          Length = 205

 Score =  162 bits (411), Expect = 6e-40
 Identities = 78/141 (55%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = -1

Query: 643 QRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDD-EPFICTM 467
           QRL F+  LY+L+E R +KP T  S+V+++LYEKRFGPY+ +P+IAGL     +PFIC++
Sbjct: 65  QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWG 287
           D IG   +  DFVVSGT SE +YG CES+++PNM+PE LFETISQA+L++VDRD +SG G
Sbjct: 125 DLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMG 184

Query: 286 GYVLIVTATEVQERVLKGRMD 224
             V I+   ++  R LK RMD
Sbjct: 185 VIVHIIEKDKITTRTLKARMD 205



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>PSB3_MOUSE (Q9R1P1) Proteasome subunit beta type 3 (EC 3.4.25.1) (Proteasome|
           theta chain) (Proteasome chain 13) (Proteasome component
           C10-II)
          Length = 205

 Score =  162 bits (410), Expect = 8e-40
 Identities = 77/141 (54%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = -1

Query: 643 QRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDD-EPFICTM 467
           QRL F+  LY+L+E R +KP T  S+V+++LYEKRFGPY+ +P+IAGL     +PFIC++
Sbjct: 65  QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWG 287
           D IG   +  DFVVSGT SE +YG CES+++PNM+PE LFETISQA+L++VDRD +SG G
Sbjct: 125 DLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMG 184

Query: 286 GYVLIVTATEVQERVLKGRMD 224
             V ++   ++  R LK RMD
Sbjct: 185 VIVHVIEKDKITTRTLKARMD 205



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>PSB3_DROME (Q9XYN7) Proteasome subunit beta type 3 (EC 3.4.25.1) (20S|
           proteasome subunit beta-3)
          Length = 205

 Score =  160 bits (406), Expect = 2e-39
 Identities = 72/140 (51%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
 Frame = -1

Query: 640 RLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDD-EPFICTMD 464
           RL+F+  LY+ RE R+M P+ F++++SS LYE RFGPYF +P++AGL     EPFIC MD
Sbjct: 66  RLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMD 125

Query: 463 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGG 284
            IG      DFVV+GT +E LYG CE+++KP++EP++LFE I+Q+++++ DRD +SGWG 
Sbjct: 126 LIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGA 185

Query: 283 YVLIVTATEVQERVLKGRMD 224
            V I+   ++ ER LK RMD
Sbjct: 186 TVYIIEKDKITERTLKTRMD 205



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>PSB3_HUMAN (P49720) Proteasome subunit beta type 3 (EC 3.4.25.1) (Proteasome|
           theta chain) (Proteasome chain 13) (Proteasome component
           C10-II)
          Length = 205

 Score =  160 bits (405), Expect = 3e-39
 Identities = 76/141 (53%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = -1

Query: 643 QRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDD-EPFICTM 467
           QRL F+  LY+L+E R +KP T  S+V+++LYEKRFGPY+ +P+IAGL     +PFIC++
Sbjct: 65  QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWG 287
           D IG   +  DFVVSGT +E +YG CES+++PNM+P+ LFETISQA+L++VDRD +SG G
Sbjct: 125 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 184

Query: 286 GYVLIVTATEVQERVLKGRMD 224
             V I+   ++  R LK RMD
Sbjct: 185 VIVHIIEKDKITTRTLKARMD 205



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>PSB3_TRYBB (Q9NDA1) Proteasome subunit beta type 3 (EC 3.4.25.1) (20S|
           proteasome subunit beta-3)
          Length = 205

 Score =  145 bits (365), Expect = 1e-34
 Identities = 69/141 (48%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
 Frame = -1

Query: 643 QRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDD-EPFICTM 467
           Q++ F+ ++Y+LREERD+  + FA+LVSSMLYE RFGP+F +P+I  + +   E ++C  
Sbjct: 65  QKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVYLCAT 124

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWG 287
           D IGA    +D+V +GT +ESL+G CE++++P +EPEELFE  +QA+LS+ DRD LSG+G
Sbjct: 125 DLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYG 184

Query: 286 GYVLIVTATEVQERVLKGRMD 224
               IVT  ++  R++KGR D
Sbjct: 185 AVAAIVTKDKLVTRLIKGRKD 205



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>PSB3_CAEEL (Q23237) Proteasome subunit beta type 3 (EC 3.4.25.1) (Proteasome|
           subunit beta 3)
          Length = 204

 Score =  143 bits (361), Expect = 4e-34
 Identities = 60/140 (42%), Positives = 95/140 (67%)
 Frame = -1

Query: 643 QRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMD 464
           ++++F+  LY+LRE R++KP+  + ++S++ Y+ RFG YF +P++AGL   ++P+IC MD
Sbjct: 65  EKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMD 124

Query: 463 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGG 284
            IG     +DFV  GT  E L G CE+ ++ NM+P+ELFE  +Q++LS ++RD  SGWG 
Sbjct: 125 TIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGA 184

Query: 283 YVLIVTATEVQERVLKGRMD 224
            V  +T  +V    +K RMD
Sbjct: 185 VVYTITKDKVNVSTIKARMD 204



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>PSB3_GIALA (Q9N9W8) Proteasome subunit beta type 3 (EC 3.4.25.1)|
          Length = 207

 Score =  119 bits (297), Expect = 1e-26
 Identities = 52/126 (41%), Positives = 83/126 (65%)
 Frame = -1

Query: 646 YQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTM 467
           Y+++  K  LY L+E+R+++P   A ++SS LY+ RFGPYF  PIIAG   D +P++  M
Sbjct: 66  YRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAM 125

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWG 287
           D IG  +   +F ++GTAS+ L G CE+  KP+M  +E+   + Q + S+ +RD  SGWG
Sbjct: 126 DTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGWG 185

Query: 286 GYVLIV 269
            +V+++
Sbjct: 186 AHVVVL 191



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>PSB3_BOVIN (P33672) Proteasome subunit beta type 3 (EC 3.4.25.1) (Proteasome|
           theta chain) (Proteasome chain 13) (Proteasome component
           C10-II) (Fragment)
          Length = 192

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 54/141 (38%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
 Frame = -1

Query: 643 QRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPF-ICTM 467
           QRL F+  LY+L+E           +V+++LYEKRFGPY+ +P+IAGL        IC++
Sbjct: 52  QRLKFRLNLYELKEGXXXXXXXXXCMVANLLYEKRFGPYYTEPVIAGLDPXXXXXXICSL 111

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWG 287
           D IG   +  DFVVSGT                  PE LFETISQA             G
Sbjct: 112 DLIGCPMVTDDFVVSGTXXXXXXXXXXXXXXXXXXPEXLFETISQAXXXXXXXXXXXXMG 171

Query: 286 GYVLIVTATEVQERVLKGRMD 224
             V I+   ++  R LK RMD
Sbjct: 172 VIVHIIEKDKITTRTLKARMD 192



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>PSMB_METJA (Q58634) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 224

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 40/129 (31%), Positives = 69/129 (53%)
 Frame = -1

Query: 637 LVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCI 458
           L+ + KLY++R  R++ P   A+L+S++L+  R  P+  Q II G    +   + ++D +
Sbjct: 65  LIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPL 124

Query: 457 GAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYV 278
           G     K F  +G+ S   YG  E+ Y  +M  EE  +    AL S+++RD  SG G  +
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISL 184

Query: 277 LIVTATEVQ 251
            ++T   V+
Sbjct: 185 AVITKDGVK 193



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>PSMB_ARCFU (Q9P996) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 213

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 40/121 (33%), Positives = 64/121 (52%)
 Frame = -1

Query: 619 LYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELA 440
           LY++R ER       A+L S++L   R+ PY  Q +I G+  + +  I ++D IG     
Sbjct: 76  LYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEE 134

Query: 439 KDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTAT 260
           KD V +G+ S + YG  E  + P +  +E  E   +A+ S++ RD  SG G  V+ +T  
Sbjct: 135 KDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITED 194

Query: 259 E 257
           E
Sbjct: 195 E 195



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>PSMB_METTH (O27270) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 210

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 35/121 (28%), Positives = 64/121 (52%)
 Frame = -1

Query: 619 LYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELA 440
           LY++R    +  E  A+L +++L+  RF P+  Q ++ G+ ++    I ++D  G   + 
Sbjct: 74  LYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAK-IYSLDPSGGM-IP 131

Query: 439 KDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTAT 260
             FV +G+ S   YG  E  Y   +  +E  +   +A+ S+++RD  SG G  +L+ T T
Sbjct: 132 DKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNG--ILVATVT 189

Query: 259 E 257
           E
Sbjct: 190 E 190



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>PSMB_THEAC (P28061) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 211

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 34/119 (28%), Positives = 64/119 (53%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           +LY+L+   +M  E  A+L+S+ML + ++ PY  Q ++ G+  D  P + ++D  G   +
Sbjct: 72  ELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGI--DTAPHVFSIDAAGG-SV 128

Query: 442 AKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVT 266
              +  +G+ S  +YG  ES Y   M  +E  + + +A+ ++  RD  SG    V ++T
Sbjct: 129 EDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVIT 187



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>PSMB_PYRAB (Q9V0N9) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 207

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 37/128 (28%), Positives = 68/128 (53%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           KLY  +  + M  +  A+L+++ML   R  PY    ++ G   D++P + ++D +G    
Sbjct: 74  KLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF--DEKPRLYSVDMMGGITE 131

Query: 442 AKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTA 263
            K +V +G+  E  Y   +S Y+ +++  E  +   +A+ S++ RD  SG G  +++VT 
Sbjct: 132 DK-YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG--IMVVTI 188

Query: 262 TEVQERVL 239
           TE   R L
Sbjct: 189 TEEGYREL 196



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>PSMB_PYRHO (O50110) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 207

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 33/122 (27%), Positives = 66/122 (54%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           KLY  +  + M  +  A+L+++++   ++ PY    ++   G D++P + ++D +G    
Sbjct: 74  KLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVG--GYDEKPKLYSVDMVGGITE 131

Query: 442 AKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTA 263
            K +  +G+  E  Y   +S YK N+  EE  +   +A+ +++ RD  SG G  +L+VT 
Sbjct: 132 DK-YATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDG--ILVVTI 188

Query: 262 TE 257
           T+
Sbjct: 189 TK 190



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>PSB12_CARAU (Q9IB83) Proteasome subunit beta type 1-B (EC 3.4.25.1) (20S|
           proteasome beta 6 subunit B) (B6-B)
          Length = 237

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           K+Y+    + M     A+++S++LY +RF PY+   II GL ++    + + D +G+ + 
Sbjct: 97  KMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ- 155

Query: 442 AKDFVVSGTASESL---------YGACESMYKPNMEPEELFETISQALLSSVDRDCLSGW 290
              +   G+AS  L         +   E++ +  +  E+  + +    +S+ +RD  +G 
Sbjct: 156 RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGD 215

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
              + I+T   ++E ++  R D
Sbjct: 216 ALKICIITKEGIREEIVPLRKD 237



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>PSB11_CARAU (Q9IB84) Proteasome subunit beta type 1-A (EC 3.4.25.1) (20S|
           proteasome beta 6 subunit A) (B6-A)
          Length = 238

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           K+Y+    + M     A+++S++LY +RF PY+   II GL ++    + + D +G+ + 
Sbjct: 98  KMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ- 156

Query: 442 AKDFVVSGTASESL---------YGACESMYKPNMEPEELFETISQALLSSVDRDCLSGW 290
              +   G+AS  L         +   E++ +  +  E+  + +    +S+ +RD  +G 
Sbjct: 157 RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGD 216

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
              + I+T   ++E ++  R D
Sbjct: 217 ALKICIITKEGIREEIVPLRKD 238



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>PSB9_MUSMB (O35522) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Proteasome chain 7) (Macropain chain 7) (Multicatalytic
           endopeptidase complex chain 7) (RING12 protein) (Low
           molecular mass protein 2)
          Length = 219

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 34/114 (29%), Positives = 59/114 (51%)
 Frame = -1

Query: 574 ASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESLYG 395
           A++V ++ Y+ R        I+AG  Q +   +     +G   + + F +SG+ S  +YG
Sbjct: 100 ANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTISGSGSSYIYG 156

Query: 394 ACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
             ++ YKP M PEE     + A+  +++RD  SG   Y++ +TA  V  RV+ G
Sbjct: 157 YVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 210



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>PSB1_MOUSE (O09061) Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome|
           component C5) (Macropain subunit C5) (Multicatalytic
           endopeptidase complex subunit C5) (Proteasome gamma
           chain)
          Length = 240

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           K+Y+    + M     A+++S++LY +RF PY+   II GL ++ +  + + D +G+ + 
Sbjct: 100 KMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ- 158

Query: 442 AKDFVVSGTASESLYGACESM--YKPNMEPEELFETISQAL-------LSSVDRDCLSGW 290
              F   G+AS  L    ++   +K     E +  T+ +A+       +S+ +RD  +G 
Sbjct: 159 RDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGD 218

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
              + IVT   ++E  +  R D
Sbjct: 219 ALRICIVTKEGIREETVPLRKD 240



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>PSB9_MUSSI (O35524) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Proteasome chain 7) (Macropain chain 7) (Multicatalytic
           endopeptidase complex chain 7) (RING12 protein) (Low
           molecular mass protein 2)
          Length = 219

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 33/114 (28%), Positives = 58/114 (50%)
 Frame = -1

Query: 574 ASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESLYG 395
           A++V ++ Y+ R        I+AG  Q +   +     +G   + + F + G+ S  +YG
Sbjct: 100 ANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYG 156

Query: 394 ACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
             ++ YKP M PEE     + A+  +++RD  SG   Y++ +TA  V  RV+ G
Sbjct: 157 YVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 210



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>PSB9_MUSDU (O35521) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Proteasome chain 7) (Macropain chain 7) (Multicatalytic
           endopeptidase complex chain 7) (RING12 protein) (Low
           molecular mass protein 2)
          Length = 219

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 33/114 (28%), Positives = 58/114 (50%)
 Frame = -1

Query: 574 ASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESLYG 395
           A++V ++ Y+ R        I+AG  Q +   +     +G   + + F + G+ S  +YG
Sbjct: 100 ANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYG 156

Query: 394 ACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
             ++ YKP M PEE     + A+  +++RD  SG   Y++ +TA  V  RV+ G
Sbjct: 157 YVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 210



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>PSB9_MOUSE (P28076) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Proteasome chain 7) (Macropain chain 7) (Multicatalytic
           endopeptidase complex chain 7) (RING12 protein) (Low
           molecular mass protein 2) (LMP-2d)
          Length = 219

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 33/114 (28%), Positives = 58/114 (50%)
 Frame = -1

Query: 574 ASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESLYG 395
           A++V ++ Y+ R        I+AG  Q +   +     +G   + + F + G+ S  +YG
Sbjct: 100 ANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYG 156

Query: 394 ACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
             ++ YKP M PEE     + A+  +++RD  SG   Y++ +TA  V  RV+ G
Sbjct: 157 YVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 210



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>PSB1_RAT (P18421) Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome|
           component C5) (Macropain subunit C5) (Multicatalytic
           endopeptidase complex subunit C5) (Proteasome gamma
           chain)
          Length = 240

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           K+Y+    + M     A+++S++LY +RF PY+   II GL ++ +  + + D +G+ + 
Sbjct: 100 KMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQ- 158

Query: 442 AKDFVVSGTASESLYGACESM--YKPNMEPEELFETISQAL-------LSSVDRDCLSGW 290
              F   G+AS  L    ++   +K     E +  T+ +A+       +S+ +RD  +G 
Sbjct: 159 RDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGD 218

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
              + IVT   ++E  +  R D
Sbjct: 219 ALRICIVTKEGIREETVPLRKD 240



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>PSB1_HUMAN (P20618) Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome|
           component C5) (Macropain subunit C5) (Multicatalytic
           endopeptidase complex subunit C5) (Proteasome gamma
           chain)
          Length = 241

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKEL 443
           K+Y+    + M     A+++S++LY +RF PY+   II GL ++ +  + + D +G+ + 
Sbjct: 101 KMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ- 159

Query: 442 AKDFVVSGTASESLYGACESMYK-PNMEPEE--------LFETISQALLSSVDRDCLSGW 290
              F   G+AS  L    ++     NM+  E            +    +S+ +RD  +G 
Sbjct: 160 RDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGD 219

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
              + IVT   ++E  +  R D
Sbjct: 220 ALRICIVTKEGIREETVSLRKD 241



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>PSB9_RAT (P28077) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Proteasome chain 7) (Macropain chain 7) (Multicatalytic
           endopeptidase complex chain 7) (RING12 protein) (Low
           molecular mass protein 2)
          Length = 219

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 25/76 (32%), Positives = 42/76 (55%)
 Frame = -1

Query: 460 IGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGY 281
           +G   + + F + G+ S  +YG  ++ YKP M PEE     + A+  +++RD  SG   Y
Sbjct: 135 MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIY 194

Query: 280 VLIVTATEVQERVLKG 233
           ++ +TA  V  RV+ G
Sbjct: 195 LVTITADGVDHRVILG 210



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>PSB9_HUMAN (P28065) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Proteasome chain 7) (Macropain chain 7) (Multicatalytic
           endopeptidase complex chain 7) (RING12 protein) (Low
           molecular mass protein 2)
          Length = 219

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/76 (32%), Positives = 40/76 (52%)
 Frame = -1

Query: 460 IGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGY 281
           +G     + F + G+ S  +YG  ++ YKP M PEE     + A+  ++ RD  SG   Y
Sbjct: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIY 194

Query: 280 VLIVTATEVQERVLKG 233
           ++ +TA  V  RV+ G
Sbjct: 195 LVTITAAGVDHRVILG 210



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>PSB1_ARATH (P42742) Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome|
           subunit beta type 6) (20S proteasome beta subunit F-1)
           (TAS-G39.20) (TAS-F22/FAFP98) (Proteasome component C5)
          Length = 223

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           L + L  +H +YQ +  + M     A L+S+ LY KRF PY+   ++ GL ++ +  + T
Sbjct: 70  LQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFT 129

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYK---PNMEPE----------ELFETISQA 329
            D +G+ E    +   G+ S  +    ++  K   P + P+          E  + +   
Sbjct: 130 YDAVGSYERV-GYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTV 188

Query: 328 LLSSVDRDCLSGWGGYVLIVTATEVQERVLKGRMD 224
             S+ +RD  +G    ++I+ A  ++  ++  R D
Sbjct: 189 FASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223



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>PSB1_DROME (P40304) Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome|
           26 kDa subunit)
          Length = 235

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
 Frame = -1

Query: 616 YQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAK 437
           Y+    R M  E  A ++S  +Y +RF PY+   I+AG+  + +  + + D IG  E A 
Sbjct: 95  YEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKA- 153

Query: 436 DFVVSGTASESLYGACESMY-----------KPNMEPEELFETISQALLSSVDRDCLSGW 290
            +   GTA   L    ++             K  +  E      S   +S+ +RD  +G 
Sbjct: 154 TYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFISAAERDIYTGD 213

Query: 289 GGYVLIVTATEVQERVLKGRMD 224
              + I+T   ++ R L  R D
Sbjct: 214 SVLINIITKDGIEVRTLTLRQD 235



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>PSB1_ORYSA (O64464) Proteasome subunit beta type 1 (EC 3.4.25.1) (20S|
           proteasome alpha subunit F) (20S proteasome subunit
           beta-6)
          Length = 221

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           L++ L  +  LYQ +  + M     A L+S+ LY KRF PY+   ++ GL  + +  + T
Sbjct: 68  LHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFT 127

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYK---PNMEP----------EELFETISQA 329
            D +G+ E    +   GT S  +    ++  K   P + P           E  + +   
Sbjct: 128 YDAVGSYE-RTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDV 186

Query: 328 LLSSVDRDCLSGWGGYVLIVTATEVQERVLKGRMD 224
             S+ +RD  +G    ++++     +   +  R D
Sbjct: 187 FASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221



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>PSB1_PETHY (O82531) Proteasome subunit beta type 1 (EC 3.4.25.1) (20S|
           proteasome alpha subunit F) (20S proteasome subunit
           beta-6)
          Length = 223

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           L + L  +H +YQ +  + M       L+S+ LY KRF PY+   ++ GL  + +  + T
Sbjct: 70  LQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFT 129

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYK---PNMEP----------EELFETISQA 329
            D +G+ E    +   G+ S  +    ++  K   P + P           E  + +   
Sbjct: 130 YDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTC 188

Query: 328 LLSSVDRDCLSGWGGYVLIVTATEVQERVLKGRMD 224
             S+ +RD  +G    ++I+ A+ ++   ++ R D
Sbjct: 189 FASATERDIYTGDRLEIVILNASGIRREEMELRKD 223



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>PSB8_CANFA (Q5W416) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)|
           (Proteasome component C13) (Macropain subunit C13)
           (Multicatalytic endopeptidase complex subunit C13)
          Length = 276

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
 Frame = -1

Query: 646 YQRLVFKH-KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           ++RL+ K  +LY LR    +     + L+S+M+Y+ R        +I G  +   P +  
Sbjct: 127 WERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKG-PGLYY 185

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSG 293
           +D  G + L+ +   +G+ S   YG  +S Y+P++ PEE +E   +A+  +  RD  SG
Sbjct: 186 VDQNGTR-LSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSG 243



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>PSB9_MUSPL (O35523) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Proteasome chain 7) (Macropain chain 7) (Multicatalytic
           endopeptidase complex chain 7) (RING12 protein) (Low
           molecular mass protein 2)
          Length = 219

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 31/114 (27%), Positives = 56/114 (49%)
 Frame = -1

Query: 574 ASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESLYG 395
           A++V ++ Y+ R        I+AG  Q +   +     +G   + + F + G+ S  +YG
Sbjct: 100 ANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYG 156

Query: 394 ACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
             ++ YKP M  EE     + A+  +++RD  SG   Y++ +T   V  RV+ G
Sbjct: 157 YVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGVIYLVTITVAGVDHRVILG 210



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>PSB1_SCHPO (Q9UQY2) Probable proteasome subunit beta type 1 (EC 3.4.25.1)|
          Length = 225

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           L +R+  +  LY    ER M  ++ A +V ++LY KRF PY+    +AG+ ++ +  I +
Sbjct: 68  LVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYS 127

Query: 469 MDCIGAKE--------LAKDFVVS------GTASESLYGACESMYKPN--MEPEELFETI 338
            D +G+ E         A +F+           ++ + G+     KP   ++ EE  +  
Sbjct: 128 FDPVGSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKIT 187

Query: 337 SQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKGRMD 224
           + A  S+ +R    G    V I+T   V+ R++  + D
Sbjct: 188 TDAFTSAGERHIEVGDSVLVKIITKEGVETRIIPLKKD 225



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>PSMB_PYRFU (Q8U125) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 206

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 31/132 (23%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           L + L  +  LY+    ++M  +  A+L++++L   ++ PY    ++   G D++P + +
Sbjct: 65  LVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVG--GYDEKPRLFS 122

Query: 469 MDCIGAKELAKD-FVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSG 293
           +D +G   + +D +  +G+  E  Y   +S Y+  M   +  +   +A+  ++ RD  +G
Sbjct: 123 VDMVGG--ITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTG 180

Query: 292 WGGYVLIVTATE 257
            G  +L+VT T+
Sbjct: 181 DG--LLVVTITK 190



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>PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)|
           (Proteasome component C13) (Macropain subunit C13)
           (Multicatalytic endopeptidase complex subunit C13)
          Length = 276

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
 Frame = -1

Query: 646 YQRLVFKH-KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           ++RL+ K  +LY LR    +     + L+S+M+ + R           G+G      IC 
Sbjct: 127 WERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYR-----------GMGLSMGSMICG 175

Query: 469 MDCIG---------AKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSS 317
            D  G            L+ +   +G+ +   YG  +S Y+PN+ PEE ++   +A+  +
Sbjct: 176 WDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYA 235

Query: 316 VDRDCLSG 293
             RD  SG
Sbjct: 236 THRDSYSG 243



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>PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 precursor (EC|
           3.4.25.1)
          Length = 226

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 30/125 (24%), Positives = 60/125 (48%)
 Frame = -1

Query: 619 LYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELA 440
           +Y+++   D    T A+L S M Y+ +        I+AG  +     + ++  +G     
Sbjct: 89  MYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGDVYSIP-LGGSLHK 146

Query: 439 KDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTAT 260
           +   + G+ S  +YG C++ ++ NM  EE  E +  A+  +++RD  SG G   +++   
Sbjct: 147 QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSG-GTIRMVILNK 205

Query: 259 EVQER 245
           +  ER
Sbjct: 206 DGMER 210



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>PSB1_YEAST (P23724) Proteasome component C5 (EC 3.4.25.1) (Multicatalytic|
           endopeptidase complex subunit C5)
          Length = 241

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
 Frame = -1

Query: 601 ERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVS 422
           ++ +   + A  +  +LY KRF PY+   IIAGL +D +  + + D +G+ E  ++   +
Sbjct: 100 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYE--REQCRA 157

Query: 421 GTASESLYGA-------CESMYKPN-----------MEPEELFETISQALLSSVDRDCLS 296
           G A+ SL           ++ Y+P            +  EE+ + +  +  S+ +R    
Sbjct: 158 GGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQV 217

Query: 295 GWGGYVLIVTATEVQERVLKGRMD 224
           G G  +LIVT   V++   + + D
Sbjct: 218 GDGLEILIVTKDGVRKEFYELKRD 241



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>PSB6_HUMAN (P28072) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)|
           (Proteasome delta chain) (Macropain delta chain)
           (Multicatalytic endopeptidase complex delta chain)
           (Proteasome subunit Y)
          Length = 239

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 31/116 (26%), Positives = 54/116 (46%)
 Frame = -1

Query: 580 TFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESL 401
           T ASL   M Y  R        IIAG    +   + ++  +G   + + F + G+ S  +
Sbjct: 112 TAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVP-MGGMMVRQSFAIGGSGSSYI 169

Query: 400 YGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
           YG  ++ Y+  M  EE  +  + AL  +++RD  SG    +  +  + V+ +VL G
Sbjct: 170 YGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 225



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>PSB9_ORYLA (Q8UW64) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)|
           (Low molecular mass protein 2)
          Length = 217

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 29/129 (22%), Positives = 60/129 (46%)
 Frame = -1

Query: 619 LYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELA 440
           ++ L  + D +  + A+LV ++ Y+ +        I+AG  + D   +     +G     
Sbjct: 83  VHSLEIDEDPQVRSAATLVKNISYKYK-EELSAHLIVAGWDRRDGGQVFAT--LGGLLTR 139

Query: 439 KDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTAT 260
           + F + G+ S  +YG  ++ Y+  M  EE  + +   L  +++RD  SG   Y++ +   
Sbjct: 140 QPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGGVAYIVTIDEH 199

Query: 259 EVQERVLKG 233
              E+V+ G
Sbjct: 200 STDEKVILG 208



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>PSB8_RAT (P28064) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)|
           (Proteasome component C13) (Macropain subunit C13)
           (Multicatalytic endopeptidase complex subunit C13)
          Length = 276

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = -1

Query: 646 YQRLVFKH-KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           ++RL+ K  +LY LR    +     + L+S+M+ + R        +I G  +   P +  
Sbjct: 127 WERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKG-PGLYY 185

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSG 293
           +D  G + L+     +G+ +   YG  +S Y+ ++ PEE ++   +A++ +  RD  SG
Sbjct: 186 VDDNGTR-LSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSG 243



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>PSB6_RAT (P28073) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)|
           (Proteasome delta chain) (Macropain delta chain)
           (Multicatalytic endopeptidase complex delta chain)
           (Proteasome subunit Y) (Proteasome chain 5)
          Length = 238

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/116 (25%), Positives = 54/116 (46%)
 Frame = -1

Query: 580 TFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESL 401
           T ASL   M Y  R        IIAG    +   + ++  +G   + + F + G+ S  +
Sbjct: 111 TAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVP-MGGMMVRQSFAIGGSGSSYI 168

Query: 400 YGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
           YG  ++ Y+  M  +E  +  + AL  +++RD  SG    +  +  + V+ +VL G
Sbjct: 169 YGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVERQVLLG 224



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>PSB6_MOUSE (Q60692) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)|
           (Proteasome delta chain) (Macropain delta chain)
           (Multicatalytic endopeptidase complex delta chain)
           (Proteasome subunit Y)
          Length = 238

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/116 (25%), Positives = 54/116 (46%)
 Frame = -1

Query: 580 TFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVSGTASESL 401
           T ASL   M Y  R        IIAG    +   + ++  +G   + + F + G+ S  +
Sbjct: 111 TAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVP-MGGMMVRQSFAIGGSGSSYI 168

Query: 400 YGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTATEVQERVLKG 233
           YG  ++ Y+  M  +E  +  + AL  +++RD  SG    +  +  + V+ +VL G
Sbjct: 169 YGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVERQVLLG 224



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>PSB5A_ARATH (O23717) Proteasome subunit beta type 5-A precursor (EC 3.4.25.1)|
           (20S proteasome beta subunit E-1) (Proteasome epsilon-1
           chain) (Proteasome component E)
          Length = 274

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 33/118 (27%), Positives = 56/118 (47%)
 Frame = -1

Query: 646 YQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTM 467
           ++ L  K +L++L  +R +     + L+++MLY  R        +IAG   +  P +  +
Sbjct: 113 HRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAG-WDETGPGLYYV 171

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSG 293
           D  G +     F V G+ S   YG  +S YK +M  EE  E   +++  +  RD  SG
Sbjct: 172 DNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASG 228



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>PSB5B_ARATH (Q9LIP2) Proteasome subunit beta type 5-B precursor (EC 3.4.25.1)|
           (20S proteasome beta subunit E-2) (Proteasome epsilon-2
           chain)
          Length = 273

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 33/118 (27%), Positives = 56/118 (47%)
 Frame = -1

Query: 646 YQRLVFKHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTM 467
           ++ L  K +L++L  +R +     + L+++MLY  R        +IAG   +  P +  +
Sbjct: 113 HRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAG-WDETGPGLYYV 171

Query: 466 DCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSG 293
           D  G +     F V G+ S   YG  +S YK +M  EE  E   +++  +  RD  SG
Sbjct: 172 DNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASG 228



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>PSB5_CHICK (P34065) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)|
           (Proteasome chain 1) (Macropain chain 1) (Multicatalytic
           endopeptidase complex chain 1) (Proteasome subunit C1)
           (Fragment)
          Length = 256

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
 Frame = -1

Query: 646 YQRLVFKH-KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           ++RL+ +  ++Y+LR +  +     + L+++M+Y+ +        +I G  +   P +  
Sbjct: 110 WERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRG-PGLYY 168

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSG 293
           +D  G +   + F V G+ S   YG  +   +P+M  +E  E   +A+  +  RD  SG
Sbjct: 169 VDSEGTRIPGEAFAV-GSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSG 226



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>PSB1_TRYBB (Q9U794) Proteasome subunit beta type 1 (EC 3.4.25.1) (20S|
           proteasome beta 6 subunit)
          Length = 258

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
 Frame = -1

Query: 649 LYQRLVFKHKLYQLREERDM-KPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFIC 473
           L Q L ++ + YQ      +   +  A L S+MLY++RF PY+   +I G+ +       
Sbjct: 108 LQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGIDEKGAGVCY 167

Query: 472 TMDCIGAKELAKDFVVSGTASESLYGACESMY---------KPNMEPEELFETISQALLS 320
           + D +G+ E  + +   G+AS  +    + +            ++  EE    +  A   
Sbjct: 168 SYDPVGSTEPFR-YGTCGSASSFVEPLLDCLLTRQHMVTQAPADLTMEEALGMLKNAFTG 226

Query: 319 SVDRDCLSGWGGYVLIVTATEVQERVLKGRMD 224
           + +RD  +G      I+TA  V   + + R D
Sbjct: 227 AAERDIFTGDTVCFHIITADGVGTEMFELRKD 258



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>PSB8_MOUSE (P28063) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)|
           (Proteasome component C13) (Macropain subunit C13)
           (Multicatalytic endopeptidase complex subunit C13)
          Length = 276

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
 Frame = -1

Query: 646 YQRLVFKH-KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 470
           ++RL+ K  +LY LR    +     + L+S+M+ + R        +I G  +   P +  
Sbjct: 127 WERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKG-PGLYY 185

Query: 469 MDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSG 293
           +D  G + L+     +G+ +   YG  +S Y+ ++ PEE ++   +A+  +  RD  SG
Sbjct: 186 VDDNGTR-LSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSG 243



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>PSB1_CAEEL (P34286) Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome|
           subunit beta 6)
          Length = 258

 Score = 37.7 bits (86), Expect = 0.030
 Identities = 29/98 (29%), Positives = 45/98 (45%)
 Frame = -1

Query: 625 HKLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIGAKE 446
           HK Y+     DM  +  A L+S  LY +RF PY+   I+AG+ +  +  + + D IG  E
Sbjct: 116 HK-YRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174

Query: 445 LAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQ 332
                        S  GA E M  P ++ +    T+S+
Sbjct: 175 ---------RLGYSASGAAEPMIIPFLDCQIGHVTLSE 203



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>PSB4_DROME (Q9VNA5) Probable proteasome subunit beta type 4 (EC 3.4.25.1)|
          Length = 268

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
 Frame = -1

Query: 595 DMKPETFASLVSSMLYEK--RFGPYFCQPIIAGLGQDDEPFICTMDCIGAKELAKDFVVS 422
           +MKP++ AS ++ +LY +  R  P +   ++ G+  +  P++  +D  G     +D+VV+
Sbjct: 131 EMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRS--YEDYVVA 188

Query: 421 GTASESLYGACESMYKPN------MEPEELFETISQAL 326
              +  L        KP       +E  EL  T  + L
Sbjct: 189 TGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVL 226



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>COQ10_YEAST (Q08058) Coenzyme Q-binding protein COQ10, mitochondrial precursor|
          Length = 207

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
 Frame = -1

Query: 628 KHKLYQLREERDMKPETFASLVSSMLYEKRFGPYFC------------QPIIAGL----G 497
           + + Y LR+  +  P T  + VS +   K F PY              +P+IAGL     
Sbjct: 42  REQRYVLRKAINAPPSTVYAAVSEVAQYKEFIPYCVDSFVDKRNPVDNKPLIAGLRVGFK 101

Query: 496 QDDEPFICTMDCIGAKELAKDF-VVSGTASESLY 398
           Q DE FIC + C   K+    + VV+ T S +L+
Sbjct: 102 QYDEEFICNVTC---KDTDHTYTVVAETISHNLF 132



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>ATPD_CAEEL (Q09544) ATP synthase delta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 163

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -1

Query: 433 FVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGGYVLIVTA--- 263
           FV SGT S ++ G+C+ + +  ++ EE+ E+ ++A L +  R   SG G  V    A   
Sbjct: 91  FVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQR--ASGEGSEVARAEAQIR 148

Query: 262 TEVQERVLK 236
            EV E ++K
Sbjct: 149 AEVAEALIK 157



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>PSB2_YEAST (P22141) Proteasome component C11 (EC 3.4.25.1) (Macropain subunit|
           C11) (Proteinase YSCE subunit 11) (Multicatalytic
           endopeptidase complex subunit C11)
          Length = 198

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYE--KRFGPYFCQPIIAGLG-QDDEPFICTMDCIGA 452
           +LY +RE+ ++ P+  +S V   L +  +   PY    +I G   + ++P +  +D +G 
Sbjct: 65  QLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGT 124

Query: 451 KELAKDFVVSGTASESLYGACESMYKPNMEPEE 353
           K +   +   G +    +   +  Y+P+M  EE
Sbjct: 125 K-VELPYGAHGYSGFYTFSLLDHHYRPDMTTEE 156



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>PSB8_PIG (Q29576) Proteasome subunit beta type 8 (EC 3.4.25.1) (Proteasome|
           component C13) (Macropain subunit C13) (Multicatalytic
           endopeptidase complex subunit C13) (Fragment)
          Length = 104

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
 Frame = -1

Query: 622 KLYQLREERDMKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICTMDCIG---- 455
           +LY LR    +     + L S+M+Y+ R           G+G      IC  D  G    
Sbjct: 1   RLYYLRNGARISVSAASKLXSNMMYQYR-----------GMGLSMGSMICGWDKKGPGLY 49

Query: 454 -----AKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRD 305
                   L+ +   +G+ +   YG  +S ++ ++  EE ++   +A++ +  RD
Sbjct: 50  YVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104



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>MUC13_MOUSE (P19467) Mucin-13 precursor (Cell surface antigen 114/A10)|
           (Lymphocyte antigen 64)
          Length = 573

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +3

Query: 303 QSRSTDDNRACDMVSKSSSGSMFGLYMDSQAPYRDSDAVPETTKSLASSFAPMQSMVQIN 482
           QS+S   +      + SS G+     + SQ+P   S  V  TT S   +  P     Q  
Sbjct: 147 QSQSPGSSSQASTTTSSSGGASPPTTVQSQSP-GSSSQVSTTTSSSGGASPPTTVQSQSP 205

Query: 483 GSSSCPSP 506
           GSSS P P
Sbjct: 206 GSSSQPGP 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,799,410
Number of Sequences: 219361
Number of extensions: 1751883
Number of successful extensions: 5468
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 5336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5452
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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