ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16p03 |
|---|---|
| Clone Library Name | barley_pub |
>UBL5_ARATH (Q9FGZ9) Ubiquitin-like protein 5| Length = 73 Score = 146 bits (369), Expect = 4e-35 Identities = 70/73 (95%), Positives = 71/73 (97%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWY IYKDHITL DY Sbjct: 1 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60 Query: 320 EIHDGMGLELYYN 282 EIHDGMGLELYYN Sbjct: 61 EIHDGMGLELYYN 73
>UBL5_PSAOB (Q791B0) Ubiquitin-like protein 5 (Beacon protein)| Length = 73 Score = 130 bits (326), Expect = 4e-30 Identities = 60/72 (83%), Positives = 66/72 (91%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR KI ++KWYTI+KDH++LGDY Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60 Query: 320 EIHDGMGLELYY 285 EIHDGM LELYY Sbjct: 61 EIHDGMNLELYY 72
>UBL5_MOUSE (Q9EPV8) Ubiquitin-like protein 5| Length = 73 Score = 130 bits (326), Expect = 4e-30 Identities = 60/72 (83%), Positives = 66/72 (91%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR KI ++KWYTI+KDH++LGDY Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60 Query: 320 EIHDGMGLELYY 285 EIHDGM LELYY Sbjct: 61 EIHDGMNLELYY 72
>UBL5_MESAU (Q6EGX7) Ubiquitin-like protein 5 (Beacon protein)| Length = 73 Score = 130 bits (326), Expect = 4e-30 Identities = 60/72 (83%), Positives = 66/72 (91%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR KI ++KWYTI+KDH++LGDY Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60 Query: 320 EIHDGMGLELYY 285 EIHDGM LELYY Sbjct: 61 EIHDGMNLELYY 72
>UBL5_HUMAN (Q9BZL1) Ubiquitin-like protein 5| Length = 73 Score = 130 bits (326), Expect = 4e-30 Identities = 60/72 (83%), Positives = 66/72 (91%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR KI ++KWYTI+KDH++LGDY Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60 Query: 320 EIHDGMGLELYY 285 EIHDGM LELYY Sbjct: 61 EIHDGMNLELYY 72
>UBL5_BRARE (Q7SXF2) Ubiquitin-like protein 5| Length = 73 Score = 129 bits (325), Expect = 5e-30 Identities = 59/72 (81%), Positives = 68/72 (94%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEVV NDRLGKKVRVKCN++DTIGDLKKL+AAQTGTR EKI ++KWYTI+K+H++LGDY Sbjct: 1 MIEVVCNDRLGKKVRVKCNQEDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKNHVSLGDY 60 Query: 320 EIHDGMGLELYY 285 EIHDGM LELYY Sbjct: 61 EIHDGMNLELYY 72
>UBL5_CAEEL (P91302) Ubiquitin-like protein 5| Length = 73 Score = 123 bits (308), Expect = 5e-28 Identities = 56/72 (77%), Positives = 63/72 (87%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIE+ +NDRLGKKVR+KCN DTIGDLKKL+AAQTGTR EKI ++KWYTIYKDHITL DY Sbjct: 1 MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60 Query: 320 EIHDGMGLELYY 285 EIH+G ELYY Sbjct: 61 EIHEGFNFELYY 72
>UBL5_DROME (Q9V998) Ubiquitin-like protein 5| Length = 73 Score = 122 bits (307), Expect = 6e-28 Identities = 57/72 (79%), Positives = 63/72 (87%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIE+ NDRLGKKVRVKCN DDTIGDLKKL+AAQTGT+ EKI ++KWYTI+KD I L DY Sbjct: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTKHEKIVLKKWYTIFKDPIRLSDY 60 Query: 320 EIHDGMGLELYY 285 EIHDGM LELYY Sbjct: 61 EIHDGMNLELYY 72
>HUB1_SCHPO (O94650) Ubiquitin-like modifier hub1| Length = 73 Score = 114 bits (284), Expect = 3e-25 Identities = 51/73 (69%), Positives = 63/73 (86%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEV+ NDRLGKKVRVKC DDT+GD KKLVAAQTGT +I ++KW++++KD+ITL DY Sbjct: 1 MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADY 60 Query: 320 EIHDGMGLELYYN 282 EIHDGM LE+YY+ Sbjct: 61 EIHDGMSLEMYYS 73
>HUB1_DEBHA (Q6BUP7) Ubiquitin-like modifier HUB1| Length = 73 Score = 103 bits (256), Expect = 5e-22 Identities = 46/73 (63%), Positives = 58/73 (79%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEV+ NDRLGKK++VKC DTIGDLKK+++ Q GT EKI ++K Y +YKDHITL DY Sbjct: 1 MIEVLANDRLGKKIKVKCMPTDTIGDLKKIISLQIGTSYEKIVLKKGYQVYKDHITLDDY 60 Query: 320 EIHDGMGLELYYN 282 E+H+G ELYY+ Sbjct: 61 EVHNGFNFELYYS 73
>HUB1_CANGA (Q6FIX7) Ubiquitin-like modifier HUB1| Length = 73 Score = 99.4 bits (246), Expect = 7e-21 Identities = 45/73 (61%), Positives = 58/73 (79%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEV++NDRLGKK+RVKC EDDT+GD KK+++ Q G + KI +QK ++ KDHITL DY Sbjct: 1 MIEVLVNDRLGKKIRVKCLEDDTVGDFKKVLSVQLGMQPSKIVLQKGGSVLKDHITLYDY 60 Query: 320 EIHDGMGLELYYN 282 E+HD LELYY+ Sbjct: 61 EVHDNTNLELYYS 73
>HUB1_KLULA (Q6CU12) Ubiquitin-like modifier HUB1| Length = 74 Score = 95.5 bits (236), Expect = 1e-19 Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGT-RAEKIRIQKWYTIYKDHITLGD 324 MIEV++NDRLGKKV VKC +DT+GD KK+++ Q GT A KI +QK ++ KDHITL D Sbjct: 1 MIEVLVNDRLGKKVNVKCLSEDTVGDFKKVLSVQLGTASASKIVLQKGGSVLKDHITLED 60 Query: 323 YEIHDGMGLELYY 285 YE+HDG LELYY Sbjct: 61 YEVHDGTNLELYY 73
>HUB1_YEAST (Q6Q546) Ubiquitin-like modifier HUB1| Length = 73 Score = 95.1 bits (235), Expect = 1e-19 Identities = 44/72 (61%), Positives = 57/72 (79%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEVV+NDRLGKKVRVKC +D++GD KK+++ Q GT+ KI +QK ++ KDHI+L DY Sbjct: 1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 60 Query: 320 EIHDGMGLELYY 285 E+HD LELYY Sbjct: 61 EVHDQTNLELYY 72
>HUB1_ASHGO (Q756X3) Ubiquitin-like modifier HUB1| Length = 73 Score = 92.0 bits (227), Expect = 1e-18 Identities = 43/72 (59%), Positives = 54/72 (75%) Frame = -3 Query: 500 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLGDY 321 MIEV++NDRLGKK+RVKC D++GDLKK++A Q GT K+ + K KDHI+L DY Sbjct: 1 MIEVIVNDRLGKKLRVKCLSTDSVGDLKKVLAVQLGTAHGKVALHKGGVNLKDHISLDDY 60 Query: 320 EIHDGMGLELYY 285 E+HDG LELYY Sbjct: 61 EVHDGTYLELYY 72
>VGLL2_HUMAN (Q8N8G2) Transcription cofactor vestigial-like protein 2 (Vgl-2)| (VITO1 protein) Length = 317 Score = 33.1 bits (74), Expect = 0.66 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = -2 Query: 435 HHRRPQE--ARGGADRDQGREDPHPEVVHHLQGPHHPWRLRDPRWDGPRALLQLASSPPA 262 HH P A GGA Q P P VH + PH DPR+ GP L+ AS PA Sbjct: 200 HHAHPHHPYALGGALGAQAAPYPRPAAVHEVYAPHF-----DPRY-GP-LLMPAASGRPA 252 Query: 261 MFSHLSLPS 235 + P+ Sbjct: 253 RLATAPAPA 261
>GRIP1_RAT (P97879) Glutamate receptor-interacting protein 1 (GRIP1 protein)| (AMPA receptor-interacting protein GRIP1) Length = 1112 Score = 33.1 bits (74), Expect = 0.66 Identities = 20/44 (45%), Positives = 23/44 (52%) Frame = -2 Query: 357 HHLQGPHHPWRLRDPRWDGPRALLQLASSPPAMFSHLSLPSMIA 226 +H PHHP R P P+AL +SPPAM S S SM A Sbjct: 372 NHHHNPHHPDHCRVPALGFPKAL--TPNSPPAMVSSSSPTSMSA 413
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 263 AGGDEASCSRARGPSHRGSRSRQG*CGPCRWC 358 +GG A R PSH G + R CG CR C Sbjct: 941 SGGTLAHTPRRSLPSHHGKKMRMARCGHCRGC 972
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 31.6 bits (70), Expect = 1.9 Identities = 12/34 (35%), Positives = 14/34 (41%) Frame = -2 Query: 435 HHRRPQEARGGADRDQGREDPHPEVVHHLQGPHH 334 HH P+E + PHP HH PHH Sbjct: 78 HHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHH 111
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Frame = -2 Query: 483 QRPPGEEGARQVQRGRHHRRPQE--ARGGADRDQGREDPHPEVVHHLQGPHHPWRLRDPR 310 ++P EE Q + HR+ ++ +G + RE P P H + H W+ + + Sbjct: 109 RQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQDEREHPRPHQPHQKEEEKHEWQHKQEK 168 Query: 309 WDG 301 G Sbjct: 169 HQG 171
>CABP3_HUMAN (Q9NZU6) Calcium-binding protein 3 (CaBP3)| Length = 192 Score = 31.2 bits (69), Expect = 2.5 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -2 Query: 306 DGPRALLQLASSPPAMFSH-LSLPSMIASVAFQSQCLQSLMCGM 178 DGP +LL + + PP + H + S ++ + +S+CL+++ G+ Sbjct: 50 DGPSSLLPVGAQPPYLLQHSFATSSCLSWLLLRSRCLRAVTAGL 93
>ATC3_YEAST (P39524) Probable phospholipid-transporting ATPase DRS2 (EC 3.6.3.1)| Length = 1355 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 113 FRLSIIIMGTIMHYLYSSSLEFIPHIKL*RHWDWNAT 223 F +I+ +GTI+ Y Y +L H +L HW W T Sbjct: 1103 FHSAIVFIGTILIYRYGFALNM--HGELADHWSWGVT 1137
>NPAS1_HUMAN (Q99742) Neuronal PAS domain protein 1 (Neuronal PAS1) (Member of| PAS protein 5) (MOP5) Length = 590 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 13/88 (14%) Frame = -2 Query: 483 QRPPGEEGARQVQRGRHHRRPQEARGGADRDQGRED-------PHPEVVHHL------QG 343 Q P E A Q Q R P D G ED P PE + Q Sbjct: 447 QAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQD 506 Query: 342 PHHPWRLRDPRWDGPRALLQLASSPPAM 259 P PW L P D P LL PP + Sbjct: 507 PVRPWGLAPP-GDPPPTLLHAGFLPPVV 533
>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)| Length = 427 Score = 29.6 bits (65), Expect = 7.2 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 381 EDPHPEVVHHLQGPHHPWRLRDP 313 + P P VHH PHHP+ + P Sbjct: 399 KSPPPPPVHHYSPPHHPYLYKSP 421
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Frame = -2 Query: 390 QGREDPHPEVVHHLQGPHHPWRLRDPR-----WDGPRALLQLASSPPA 262 + R DP P V Q PW R P W P LL ++PPA Sbjct: 1194 RSRSDPGPPVPRLPQKQRAPWGPRTPHRVPGPWGPPEPLLLYRAAPPA 1241
>ENO_MYCH2 (Q601S2) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 452 Score = 29.3 bits (64), Expect = 9.5 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = -3 Query: 446 NEDDTIGDLKKLVAA---QTGTRAEKIRIQKWYTIYKDHITLGDYEIHDGMGLELYYN 282 +ED TI DL V++ +TG+ + RI K+ + L Y D +G E++YN Sbjct: 392 SEDTTIADLAVAVSSGQIKTGSLSRTDRIAKYNRLLVIEEYLNSYAKADYIGREVFYN 449
>DNB2_ADE04 (P06500) Early E2A DNA-binding protein| Length = 512 Score = 29.3 bits (64), Expect = 9.5 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -2 Query: 462 GARQVQRGRHHRRPQEARGGADRDQGREDPHP 367 G Q++R R R P RG A GRE P P Sbjct: 5 GGSQLER-RRERTPDRGRGSASHPPGRESPSP 35
>T2_MOUSE (Q06666) Octapeptide-repeat protein T2| Length = 185 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -2 Query: 486 AQRPPGEEGARQVQRGRHHRRPQEARGG---ADRDQGRE 379 A+R G E R+V+R R R + RG A+R +GRE Sbjct: 68 AERQRGRERGREVERHRRGREAERQRGREREAERQRGRE 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,140,129 Number of Sequences: 219361 Number of extensions: 1512007 Number of successful extensions: 4726 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4716 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
