Clone Name | rbasd17e02 |
---|---|
Clone Library Name | barley_pub |
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 Score = 684 bits (345), Expect = 0.0 Identities = 498/546 (91%), Gaps = 19/546 (3%) Strand = Plus / Minus Query: 1 tgcttatttataagttgtgacagattttctccaa-cagtacgctcattgtggcagacgca 59 ||||||||||||||||||| || | |||||||| ||||| ||||||||||||||||||| Sbjct: 1885 tgcttatttataagttgtgccaactcttctccaaacagtatgctcattgtggcagacgca 1826 Query: 60 gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1825 gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 1766 Query: 120 agtaaccaaaacgacaaacggaa---gtcagaacgaattccacagacggaacagcgacag 176 |||||||||| |||| ||| | ||||||||||||| |||||||||||||||||||| Sbjct: 1765 agtaaccaaa-cgacgcacgacaacagtcagaacgaattacacagacggaacagcgacag 1707 Query: 177 caaaaatcatcttatcactcgcacagcaccgcgcc------ctcctccagagaatcctcc 230 |||| |||||||||||||||||||||| |||||| |||||| ||||| |||||| Sbjct: 1706 caaa--tcatcttatcactcgcacagcaacgcgcctgtgccctcctcgagagactcctcc 1649 Query: 231 tccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctc 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1648 tccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctc 1589 Query: 291 tccacattctcgccctcgaagcagtggaagacggacctgggcgacccggcggagacagca 350 |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1588 tccacattctcg------aagcagtggaagacagacctgggcgacccggcagagacagca 1535 Query: 351 acctcttcattcgcggtaaagctctggtagatgaggacgcccccgcaggggagctcctgc 410 | |||||| ||||||| |||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1534 agctcttcgttcgcggcaaagctctggtagatgaggacgccaccgcatggcagctcctgc 1475 Query: 411 tccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccangtggcggcg 470 ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1474 tccacaacgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcggca 1415 Query: 471 tggccgcngccaccgaagatggtgaccgccacagagaactctgaagggccgaagcaccgg 530 ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1414 tggccacggccaccgaagatggtgaccgccacagagaactctgaagggccaaagcatcgg 1355 Query: 531 agaacc 536 |||||| Sbjct: 1354 agaacc 1349
>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA, complete cds Length = 1386 Score = 632 bits (319), Expect = e-178 Identities = 436/470 (92%), Gaps = 8/470 (1%) Strand = Plus / Minus Query: 64 accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 123 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320 Query: 124 accaaaacgacaaacgga-agtcagaacgaattccacagacggaacagcgacagcaaaaa 182 |||||| |||||||| || ||||||||| ||||||||||| |||| |||||||||||| Sbjct: 1319 accaaa-cgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa-- 1263 Query: 183 tcatcttatcactcgcacagcaccgcgccctcctccagagaatcctcctccgcccgccat 242 |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1262 tcatgtcttcactcgcacagcaccgcgccctcttccagagaatcctcctccgcccgccat 1203 Query: 243 gcgagcaggttggcaagcttgccttccttgaccagagggtggccgctctccacattctcg 302 ||||| |||||||| |||||||||||||||||||||||||||| | | |||| ||||| Sbjct: 1202 gcgaggaggttggcgagcttgccttccttgaccagagggtggctg---tgcacactctcg 1146 Query: 303 ccctcgaagcagtggaagacggacctgggcgacccggcggagacagcaacctcttcattc 362 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 1145 gcctcgaagcagtggaagacggacctgggcgacccggcagagacagcaacctcttcgttc 1086 Query: 363 gcggtaaagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttg 422 |||||||||||||||||||||||||||| || |||||||||||||||||||| | |||| Sbjct: 1085 acggtaaagctctggtagatgaggacgcctccacaggggagctcctgctccacaacgttg 1026 Query: 423 ttgcagtcgtatgcctcggcgtcgagcttcttgccccangtggcggcgtggccgcngcca 482 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 1025 ttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggcca 966 Query: 483 ccgaagatggtgaccgccacagagaactctgaagggccgaagcaccggag 532 || ||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct: 965 ccaaagatggtgaccgccgcagagaactctgaagggccaaagcaccggag 916
>ref|XM_473046.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1197 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1025 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 967 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 914 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 866
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 13505 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 13447 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 13891 gctcattgtggcagacgcagctgaccacctagagct 13856 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 13394 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 13346 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 13782 aatagcctggctggctgcttcacag 13758
>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase Length = 2036 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1564 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1506 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 1950 gctcattgtggcagacgcagctgaccacctagagct 1915 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 1453 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 1405 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 1841 aatagcctggctggctgcttcacag 1817
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 24892920 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 24892862 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 24893306 gctcattgtggcagacgcagctgaccacctagagct 24893271 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 24892809 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 24892761 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173
>gb|AY966487.1| Oryza sativa (indica cultivar-group) S-adenosylmethionine decarboxylase mRNA, complete cds Length = 1197 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1025 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 967
>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds Length = 1560 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1115 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 1057 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 1501 gctcattgtggcagacgcagctgaccacctagagct 1466 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 1392 aatagcctggctggctgcttcacag 1368
>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full insert sequence Length = 2063 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 1497 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 1449 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full insert sequence Length = 2059 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 1497 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 1449 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full insert sequence Length = 2711 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 1497 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 1449 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full insert sequence Length = 2063 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 1497 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 1449 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full insert sequence Length = 1217 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 766 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 708 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 1152 gctcattgtggcagacgcagctgaccacctagagct 1117 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 655 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 607 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 1043 aatagcctggctggctgcttcacag 1019
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 154636 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 154578 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 155022 gctcattgtggcagacgcagctgaccacctagagct 154987 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaactctgaagggccgaagcacc 528 ||||| |||||||| || || ||||||||||| |||||||| ||||||| Sbjct: 154525 ccaccaaagatggtaacagcaacagagaactccgaagggccaaagcacc 154477 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 154913 aatagcctggctggctgcttcacag 154889
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 61.9 bits (31), Expect = 2e-06 Identities = 53/59 (89%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 13533 aagctctggtagatgagga-gccgccacagggcagctcctgctctaccatgttgttgca 13476 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||||||||||||| ||||||||||||| Sbjct: 13919 gctcattgtggcagacgcagctgaccacctagagct 13884 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 aatagcctggccggctgcttcacag 121 ||||||||||| ||||||||||||| Sbjct: 13810 aatagcctggctggctgcttcacag 13786
>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene) Length = 1562 Score = 52.0 bits (26), Expect = 0.002 Identities = 78/94 (82%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 368 aaagctctggtagatgaggacgcccccgcaggggagctcctgctccacga-tgttgttgc 426 |||||||||||| ||||| | || |||||||| |||||||||||||| | |||||| || Sbjct: 111 aaagctctggtaaatgagaagaccaccgcagggcagctcctgctccacaactgttgtagc 52 Query: 427 agtcgtatgcctcggcgtcgagcttcttgcccca 460 |||| || ||||||| || || ||||| ||||| Sbjct: 51 agtcataaacctcggcatcaagtttcttccccca 18
>gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence Length = 2057 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 402 agctcctgctccacgatgttgttgcagtc 430 |||||||||||||| |||||||||||||| Sbjct: 1538 agctcctgctccaccatgttgttgcagtc 1510 Score = 44.1 bits (22), Expect = 0.46 Identities = 43/50 (86%) Strand = Plus / Minus Query: 483 ccgaagatggtgaccgccacagagaactctgaagggccgaagcaccggag 532 ||||||||||| || || || || |||||||| ||||| ||||||||||| Sbjct: 1457 ccgaagatggtcacggcaacggaaaactctgaggggccaaagcaccggag 1408 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 288 ctctccacattctcgccctcgaagcagtggaa 319 |||||||| |||||||| || ||||||||||| Sbjct: 1646 ctctccacgttctcgccgtcaaagcagtggaa 1615
>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence Length = 1866 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 402 agctcctgctccacgatgttgttgcagtc 430 |||||||||||||| |||||||||||||| Sbjct: 540 agctcctgctccaccatgttgttgcagtc 568 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Plus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||| ||||||||| ||||||||||||| Sbjct: 109 gctcattgtggtagacgcagctgaccacctagagct 144 Score = 44.1 bits (22), Expect = 0.46 Identities = 43/50 (86%) Strand = Plus / Plus Query: 483 ccgaagatggtgaccgccacagagaactctgaagggccgaagcaccggag 532 ||||||||||| || || || || |||||||| ||||| ||||||||||| Sbjct: 621 ccgaagatggtcacggcaacggaaaactctgaggggccaaagcaccggag 670 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 288 ctctccacattctcgccctcgaagcagtggaa 319 |||||||| |||||||| || ||||||||||| Sbjct: 432 ctctccacgttctcgccgtcaaagcagtggaa 463
>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase Length = 1873 Score = 50.1 bits (25), Expect = 0.008 Identities = 104/131 (79%) Strand = Plus / Minus Query: 402 agctcctgctccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccan 461 |||||||||||||| |||||||||||||| || |||| || | || ||| ||||| Sbjct: 1358 agctcctgctccaccatgttgttgcagtcatagacctctgcaccaagtgcctttccccat 1299 Query: 462 gtggcggcgtggccgcngccaccgaagatggtgaccgccacagagaactctgaagggccg 521 || |||| ||||| | || ||||||||||| || || || || |||||||| ||||| Sbjct: 1298 gtcccggcatggccacgcccgccgaagatggtcacggcaacggaaaactctgaggggcca 1239 Query: 522 aagcaccggag 532 ||||||||||| Sbjct: 1238 aagcaccggag 1228 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||| ||||||||| ||||||||||||| Sbjct: 1789 gctcattgtggtagacgcagctgaccacctagagct 1754 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 288 ctctccacattctcgccctcgaagcagtggaa 319 |||||||| |||||||| || ||||||||||| Sbjct: 1466 ctctccacgttctcgccgtcaaagcagtggaa 1435
>gb|AY103590.1| Zea mays PCO098412 mRNA sequence Length = 2400 Score = 50.1 bits (25), Expect = 0.008 Identities = 104/131 (79%) Strand = Plus / Minus Query: 402 agctcctgctccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccan 461 |||||||||||||| |||||||||||||| || |||| || | || ||| ||||| Sbjct: 1607 agctcctgctccaccatgttgttgcagtcatagacctctgcaccaagtgcctttccccat 1548 Query: 462 gtggcggcgtggccgcngccaccgaagatggtgaccgccacagagaactctgaagggccg 521 || |||| ||||| | || ||||||||||| || || || || |||||||| ||||| Sbjct: 1547 gtcccggcatggccacgcccgccgaagatggtcacggcaacggaaaactctgaggggcca 1488 Query: 522 aagcaccggag 532 ||||||||||| Sbjct: 1487 aagcaccggag 1477 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 41 gctcattgtggcagacgcagcaaaccacctagagct 76 ||||||||||| ||||||||| ||||||||||||| Sbjct: 2038 gctcattgtggtagacgcagctgaccacctagagct 2003 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 288 ctctccacattctcgccctcgaagcagtggaa 319 |||||||| |||||||| || ||||||||||| Sbjct: 1715 ctctccacgttctcgccgtcaaagcagtggaa 1684
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 49 tggcagacgcagcaaaccacctagagc 75 ||||||||||||||||||| ||||||| Sbjct: 15331175 tggcagacgcagcaaaccatctagagc 15331201
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 49 tggcagacgcagcaaaccacctagagc 75 ||||||||||||||||||| ||||||| Sbjct: 110364 tggcagacgcagcaaaccatctagagc 110390
>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 gene for S-adenosylmethionine decarboxylase, complete cds Length = 2952 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 49 tggcagacgcagcaaaccacctagagc 75 ||||||||||||||||||| ||||||| Sbjct: 2817 tggcagacgcagcaaaccatctagagc 2791
>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full insert sequence Length = 2047 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 49 tggcagacgcagcaaaccacctagagc 75 ||||||||||||||||||| ||||||| Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full insert sequence Length = 2002 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 49 tggcagacgcagcaaaccacctagagc 75 ||||||||||||||||||| ||||||| Sbjct: 1918 tggcagacgcagcaaaccatctagagc 1892
>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full insert sequence Length = 2546 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 49 tggcagacgcagcaaaccacctagagc 75 ||||||||||||||||||| ||||||| Sbjct: 2443 tggcagacgcagcaaaccatctagagc 2417
>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full insert sequence Length = 2034 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 49 tggcagacgcagcaaaccacctagagc 75 ||||||||||||||||||| ||||||| Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
>ref|XM_960781.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0400) partial mRNA Length = 1224 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 411 tccacgatgttgttgcagtcgt 432 |||||||||||||||||||||| Sbjct: 88 tccacgatgttgttgcagtcgt 67
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 411 tccacgatgttgttgcagtcgt 432 |||||||||||||||||||||| Sbjct: 55310 tccacgatgttgttgcagtcgt 55331
>gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9) gene, partial cds Length = 2389 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ataagttgtgacagattttctc 31 |||||||||||||||||||||| Sbjct: 1265 ataagttgtgacagattttctc 1286
>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds Length = 20754 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ataagttgtgacagattttctc 31 |||||||||||||||||||||| Sbjct: 8297 ataagttgtgacagattttctc 8276
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ataagttgtgacagattttctc 31 |||||||||||||||||||||| Sbjct: 29615 ataagttgtgacagattttctc 29636
>ref|XM_466676.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1750 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 1233 gccaccaaagatggtaaccgcaacagagaactc 1201
>ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1476_F05.33 mRNA Length = 1982 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 1465 gccaccaaagatggtaaccgcaacagagaactc 1433
>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence Length = 191540 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tgccttccttgaccagagggt 282 ||||||||||||||||||||| Sbjct: 51033 tgccttccttgaccagagggt 51053
>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12 Length = 240050 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 tccagagaatcctcctccgcc 236 ||||||||||||||||||||| Sbjct: 94892 tccagagaatcctcctccgcc 94912
>emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethionine decarboxylase 2 (adometDC2 gene) Length = 1971 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 1451 gccaccaaagatggtaaccgcaacagagaactc 1419
>gb|AF420239.1|AF420239 Dendrobium crumenatum S-adenosyl-L-methionine decarboxylase (Samdc) mRNA, complete cds Length = 1894 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 480 ccaccgaagatggtgaccgccacagagaa 508 ||||| ||||||||||| ||||||||||| Sbjct: 1425 ccaccaaagatggtgacggccacagagaa 1397
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 24067152 gccaccaaagatggtaaccgcaacagagaactc 24067120 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 agctcctgctccacgatgtt 421 |||||||||||||||||||| Sbjct: 35459486 agctcctgctccacgatgtt 35459505
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 25893 gccaccaaagatggtaaccgcaacagagaactc 25861
>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1476_F05 Length = 125426 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 102190 gccaccaaagatggtaaccgcaacagagaactc 102158
>dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041P13, full insert sequence Length = 1982 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 1465 gccaccaaagatggtaaccgcaacagagaactc 1433
>dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E08, full insert sequence Length = 1750 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 1233 gccaccaaagatggtaaccgcaacagagaactc 1201
>dbj|AK059503.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A07, full insert sequence Length = 1232 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 479 gccaccgaagatggtgaccgccacagagaactc 511 |||||| |||||||| ||||| ||||||||||| Sbjct: 697 gccaccaaagatggtaaccgcaacagagaactc 665
>dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, complete cds Length = 8881 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 tccagagaatcctcctccgcc 236 ||||||||||||||||||||| Sbjct: 4201 tccagagaatcctcctccgcc 4181
>ref|XM_468482.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1497 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 agctcctgctccacgatgtt 421 |||||||||||||||||||| Sbjct: 1430 agctcctgctccacgatgtt 1411
>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence Length = 245260 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtgacagattttctccaaca 36 |||||||||||||||||||| Sbjct: 27954 gtgacagattttctccaaca 27935
>gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosome 12, complete sequence Length = 172126 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gtgacagattttctccaaca 36 |||||||||||||||||||| Sbjct: 146320 gtgacagattttctccaaca 146339
>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5' end of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a CpG island, complete sequence Length = 159900 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 6 atttataagttgtgacagattttctcca 33 |||| ||||||||||||| ||||||||| Sbjct: 129003 atttttaagttgtgacagtttttctcca 129030
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 gcctcggcgtcgagcttcttgccc 458 ||||||||| |||||||||||||| Sbjct: 194781 gcctcggcggcgagcttcttgccc 194804
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 ctgggcgacccggcggagac 346 |||||||||||||||||||| Sbjct: 276909 ctgggcgacccggcggagac 276890
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gagcaggttggcaagcttgc 264 |||||||||||||||||||| Sbjct: 494503 gagcaggttggcaagcttgc 494484
>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1063_D06 Length = 102439 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 agctcctgctccacgatgtt 421 |||||||||||||||||||| Sbjct: 71007 agctcctgctccacgatgtt 71026
>gb|AC154256.2| Mus musculus BAC clone RP24-211C19 from 16, complete sequence Length = 160023 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtgacagattttctccaaca 36 |||||||||||||||||||| Sbjct: 135284 gtgacagattttctccaaca 135265
>emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 in linkage group 4, complete sequence Length = 100991 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttgtgacagattttctccaa 34 |||||||||||||||||||| Sbjct: 68540 ttgtgacagattttctccaa 68559
>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17 Length = 24990 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 tgcttcacagtaaccaaaac 131 |||||||||||||||||||| Sbjct: 19045 tgcttcacagtaaccaaaac 19064
>gb|AC171199.1| Mus musculus BAC clone RP24-469I17 from chromosome 16, complete sequence Length = 146976 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtgacagattttctccaaca 36 |||||||||||||||||||| Sbjct: 26967 gtgacagattttctccaaca 26948
>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence Length = 147211 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 6 atttataagttgtgacagattttctcca 33 |||| ||||||||||||| ||||||||| Sbjct: 2513 atttttaagttgtgacagtttttctcca 2540 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,903,111 Number of Sequences: 3902068 Number of extensions: 3903111 Number of successful extensions: 95249 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94918 Number of HSP's gapped (non-prelim): 324 length of query: 536 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 513 effective length of database: 17,143,297,704 effective search space: 8794511722152 effective search space used: 8794511722152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)