ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17d24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197147.1| Oryza sativa (japonica cultivar-group) unknown ... 127 4e-26
2gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 127 4e-26
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
4dbj|AK106067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
5dbj|AK071373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 127 4e-26
7ref|XM_473252.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
8emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4,... 52 0.002
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AB168320.1| Macaca fascicularis testis cDNA clone: QtsA-1119... 44 0.47
11ref|NM_116580.3| Arabidopsis thaliana unknown protein AT4G03420 ... 42 1.8
12emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, c... 42 1.8
13gb|AY097346.1| Arabidopsis thaliana AT4g03420/F9H3_4 mRNA, compl... 42 1.8
14gb|AY074856.1| Arabidopsis thaliana AT4g03420/F9H3_4 mRNA, compl... 42 1.8
15emb|BX828211.1|CNS0A2WU Arabidopsis thaliana Full-length cDNA Co... 42 1.8
16emb|BX827290.1|CNS0A2VC Arabidopsis thaliana Full-length cDNA Co... 42 1.8
17gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV... 42 1.8
18gb|AC119615.7| Rattus norvegicus 10 NOVECTOR CH230-502G21 (Child... 40 7.3
19gb|AC006833.2| Caenorhabditis elegans cosmid ZK616, complete seq... 40 7.3
20gb|AC124524.3| Mus musculus BAC clone RP23-402C9 from chromosome... 40 7.3
21gb|AC004740.1| Homo sapiens PAC clone RP4-631B17 from 7, complet... 40 7.3
22emb|AL391870.16| Human DNA sequence from clone RP11-491C24 on ch... 40 7.3
23emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 7.3
24gb|AC114297.2| Homo sapiens chromosome 5 clone RP11-124B7, compl... 40 7.3
25gb|AC098483.2| Homo sapiens chromosome 1 clone RP11-438F14, comp... 40 7.3
26ref|NM_001028445.1| Caenorhabditis elegans Enhancer of HAND muta... 40 7.3
27ref|NM_001028446.1| Caenorhabditis elegans Enhancer of HAND muta... 40 7.3
28ref|NM_001028444.1| Caenorhabditis elegans Enhancer of HAND muta... 40 7.3
29gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 7.3
30gb|AC022108.4|AC022108 Homo sapiens chromosome 5 clone CTC-426B1... 40 7.3
31gb|AC138089.2| Homo sapiens chromosome 1 clone RP11-407H12, comp... 40 7.3
32dbj|AP002458.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.3
33gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, comple... 40 7.3
34emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c1... 40 7.3
35emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on ch... 40 7.3
36emb|CT010428.13| Mouse DNA sequence from clone RP23-304G18 on ch... 40 7.3
37gb|AC142258.4| Mus musculus BAC clone RP24-511I20 from 13, compl... 40 7.3
38dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.3
39dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 7.3
40dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.3
41dbj|AP004482.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 7.3 
>ref|NM_197147.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0041P03.5), mRNA
          Length = 1301

 Score =  127 bits (64), Expect = 4e-26
 Identities = 115/132 (87%)
 Strand = Plus / Minus

                                                                       
Query: 369 tcacatggggtgagtgacgaagtagttgaagtcatggtgccggactccaagctgcttaag 428
           ||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct: 957 tcacatggggtgagtgatgaagtagttgtagtcatggtgctggactccgagctgcttgag 898

                                                                       
Query: 429 ccaggagtctgctgcgccgaagagggagacgatcctcttatgatctcctgtcctggggtt 488
           |||||| || || ||||||||||||||||| ||||| | | | || ||||| || |||||
Sbjct: 897 ccaggaatccgcggcgccgaagagggagaccatcctgtcacggtcccctgttctcgggtt 838

                       
Query: 489 ggtccacagaga 500
           |||||| |||||
Sbjct: 837 ggtccagagaga 826



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/51 (90%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                               
Query: 152  ttacatcttcagccaag--aaacacaaaaccttcaagtcctgatacattcg 200
            |||||||||||||||||  |||||||||||||  ||||||||||| |||||
Sbjct: 1232 ttacatcttcagccaagaaaaacacaaaacctataagtcctgatatattcg 1182
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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
              sequence
          Length = 139614

 Score =  127 bits (64), Expect = 4e-26
 Identities = 115/132 (87%)
 Strand = Plus / Minus

                                                                          
Query: 369    tcacatggggtgagtgacgaagtagttgaagtcatggtgccggactccaagctgcttaag 428
              ||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct: 111819 tcacatggggtgagtgatgaagtagttgtagtcatggtgctggactccgagctgcttgag 111760

                                                                          
Query: 429    ccaggagtctgctgcgccgaagagggagacgatcctcttatgatctcctgtcctggggtt 488
              |||||| || || ||||||||||||||||| ||||| | | | || ||||| || |||||
Sbjct: 111759 ccaggaatccgcggcgccgaagagggagaccatcctgtcacggtcccctgttctcgggtt 111700

                          
Query: 489    ggtccacagaga 500
              |||||| |||||
Sbjct: 111699 ggtccagagaga 111688



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/51 (90%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                                 
Query: 152    ttacatcttcagccaag--aaacacaaaaccttcaagtcctgatacattcg 200
              |||||||||||||||||  |||||||||||||  ||||||||||| |||||
Sbjct: 112094 ttacatcttcagccaagaaaaacacaaaacctataagtcctgatatattcg 112044
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  127 bits (64), Expect = 4e-26
 Identities = 115/132 (87%)
 Strand = Plus / Plus

                                                                            
Query: 369      tcacatggggtgagtgacgaagtagttgaagtcatggtgccggactccaagctgcttaag 428
                ||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct: 18239351 tcacatggggtgagtgatgaagtagttgtagtcatggtgctggactccgagctgcttgag 18239410

                                                                            
Query: 429      ccaggagtctgctgcgccgaagagggagacgatcctcttatgatctcctgtcctggggtt 488
                |||||| || || ||||||||||||||||| ||||| | | | || ||||| || |||||
Sbjct: 18239411 ccaggaatccgcggcgccgaagagggagaccatcctgtcacggtcccctgttctcgggtt 18239470

                            
Query: 489      ggtccacagaga 500
                |||||| |||||
Sbjct: 18239471 ggtccagagaga 18239482



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/51 (90%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                                   
Query: 152      ttacatcttcagccaagaaa--cacaaaaccttcaagtcctgatacattcg 200
                ||||||||||||||||||||  ||||||||||  ||||||||||| |||||
Sbjct: 18239076 ttacatcttcagccaagaaaaacacaaaacctataagtcctgatatattcg 18239126
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>dbj|AK106067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H01, full
            insert sequence
          Length = 1566

 Score =  127 bits (64), Expect = 4e-26
 Identities = 115/132 (87%)
 Strand = Plus / Minus

                                                                        
Query: 369  tcacatggggtgagtgacgaagtagttgaagtcatggtgccggactccaagctgcttaag 428
            ||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct: 1222 tcacatggggtgagtgatgaagtagttgtagtcatggtgctggactccgagctgcttgag 1163

                                                                        
Query: 429  ccaggagtctgctgcgccgaagagggagacgatcctcttatgatctcctgtcctggggtt 488
            |||||| || || ||||||||||||||||| ||||| | | | || ||||| || |||||
Sbjct: 1162 ccaggaatccgcggcgccgaagagggagaccatcctgtcacggtcccctgttctcgggtt 1103

                        
Query: 489  ggtccacagaga 500
            |||||| |||||
Sbjct: 1102 ggtccagagaga 1091



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/51 (90%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                               
Query: 152  ttacatcttcagccaag--aaacacaaaaccttcaagtcctgatacattcg 200
            |||||||||||||||||  |||||||||||||  ||||||||||| |||||
Sbjct: 1497 ttacatcttcagccaagaaaaacacaaaacctataagtcctgatatattcg 1447
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>dbj|AK071373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097P16, full
            insert sequence
          Length = 1560

 Score =  127 bits (64), Expect = 4e-26
 Identities = 115/132 (87%)
 Strand = Plus / Minus

                                                                        
Query: 369  tcacatggggtgagtgacgaagtagttgaagtcatggtgccggactccaagctgcttaag 428
            ||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct: 1216 tcacatggggtgagtgatgaagtagttgtagtcatggtgctggactccgagctgcttgag 1157

                                                                        
Query: 429  ccaggagtctgctgcgccgaagagggagacgatcctcttatgatctcctgtcctggggtt 488
            |||||| || || ||||||||||||||||| ||||| | | | || ||||| || |||||
Sbjct: 1156 ccaggaatccgcggcgccgaagagggagaccatcctgtcacggtcccctgttctcgggtt 1097

                        
Query: 489  ggtccacagaga 500
            |||||| |||||
Sbjct: 1096 ggtccagagaga 1085



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/51 (90%), Gaps = 2/51 (3%)
 Strand = Plus / Minus

                                                               
Query: 152  ttacatcttcagccaag--aaacacaaaaccttcaagtcctgatacattcg 200
            |||||||||||||||||  |||||||||||||  ||||||||||| |||||
Sbjct: 1491 ttacatcttcagccaagaaaaacacaaaacctataagtcctgatatattcg 1441
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  127 bits (64), Expect = 4e-26
 Identities = 115/132 (87%)
 Strand = Plus / Plus

                                                                            
Query: 369      tcacatggggtgagtgacgaagtagttgaagtcatggtgccggactccaagctgcttaag 428
                ||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct: 18248604 tcacatggggtgagtgatgaagtagttgtagtcatggtgctggactccgagctgcttgag 18248663

                                                                            
Query: 429      ccaggagtctgctgcgccgaagagggagacgatcctcttatgatctcctgtcctggggtt 488
                |||||| || || ||||||||||||||||| ||||| | | | || ||||| || |||||
Sbjct: 18248664 ccaggaatccgcggcgccgaagagggagaccatcctgtcacggtcccctgttctcgggtt 18248723

                            
Query: 489      ggtccacagaga 500
                |||||| |||||
Sbjct: 18248724 ggtccagagaga 18248735



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/51 (90%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                                   
Query: 152      ttacatcttcagccaagaaa--cacaaaaccttcaagtcctgatacattcg 200
                ||||||||||||||||||||  ||||||||||  ||||||||||| |||||
Sbjct: 18248329 ttacatcttcagccaagaaaaacacaaaacctataagtcctgatatattcg 18248379
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>ref|XM_473252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                       
Query: 387 gaagtagttgaagtcatggtgccggactccaagctgcttaagccaggagtctgctgcgcc 446
           |||||| ||||||||||| ||| ||||  |||||| ||| ||||| ||||| || |||||
Sbjct: 876 gaagtaattgaagtcatgatgctggacgtcaagcttcttcagccacgagtccgccgcgcc 817

                     
Query: 447 gaagagggag 456
           || |||||||
Sbjct: 816 gacgagggag 807
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>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
              complete sequence
          Length = 141545

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                          
Query: 387    gaagtagttgaagtcatggtgccggactccaagctgcttaagccaggagtctgctgcgcc 446
              |||||| ||||||||||| ||| ||||  |||||| ||| ||||| ||||| || |||||
Sbjct: 132074 gaagtaattgaagtcatgatgctggacgtcaagcttcttcagccacgagtccgccgcgcc 132133

                        
Query: 447    gaagagggag 456
              || |||||||
Sbjct: 132134 gacgagggag 132143
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                            
Query: 387      gaagtagttgaagtcatggtgccggactccaagctgcttaagccaggagtctgctgcgcc 446
                |||||| ||||||||||| ||| ||||  |||||| ||| ||||| ||||| || |||||
Sbjct: 26355497 gaagtaattgaagtcatgatgctggacgtcaagcttcttcagccacgagtccgccgcgcc 26355556

                          
Query: 447      gaagagggag 456
                || |||||||
Sbjct: 26355557 gacgagggag 26355566
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>dbj|AB168320.1| Macaca fascicularis testis cDNA clone: QtsA-11195, similar to human
            desmocollin 3 (DSC3), transcript variant Dsc3b, mRNA,
            RefSeq: NM_024423.1
          Length = 3357

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 403  tggtgccggactccaagctgct 424
            ||||||||||||||||||||||
Sbjct: 2097 tggtgccggactccaagctgct 2118
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>ref|NM_116580.3| Arabidopsis thaliana unknown protein AT4G03420 mRNA, complete cds
          Length = 1756

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  gaagtagttgaagtcatggtg 407
            |||||||||||||||||||||
Sbjct: 1296 gaagtagttgaagtcatggtg 1276
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>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8
          Length = 195429

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 387    gaagtagttgaagtcatggtg 407
              |||||||||||||||||||||
Sbjct: 164716 gaagtagttgaagtcatggtg 164696
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>gb|AY097346.1| Arabidopsis thaliana AT4g03420/F9H3_4 mRNA, complete cds
          Length = 933

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 387 gaagtagttgaagtcatggtg 407
           |||||||||||||||||||||
Sbjct: 909 gaagtagttgaagtcatggtg 889
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>gb|AY074856.1| Arabidopsis thaliana AT4g03420/F9H3_4 mRNA, complete cds
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  gaagtagttgaagtcatggtg 407
            |||||||||||||||||||||
Sbjct: 1032 gaagtagttgaagtcatggtg 1012
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>emb|BX828211.1|CNS0A2WU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH63ZH07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1391

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  gaagtagttgaagtcatggtg 407
            |||||||||||||||||||||
Sbjct: 1008 gaagtagttgaagtcatggtg 988
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>emb|BX827290.1|CNS0A2VC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS34ZC08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1398

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  gaagtagttgaagtcatggtg 407
            |||||||||||||||||||||
Sbjct: 1013 gaagtagttgaagtcatggtg 993
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>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
             complete sequence
          Length = 95519

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 387   gaagtagttgaagtcatggtg 407
             |||||||||||||||||||||
Sbjct: 78774 gaagtagttgaagtcatggtg 78794
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>gb|AC119615.7| Rattus norvegicus 10 NOVECTOR CH230-502G21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 156223

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    agccaagaaacacaaaacct 181
              ||||||||||||||||||||
Sbjct: 121148 agccaagaaacacaaaacct 121167
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>gb|AC006833.2| Caenorhabditis elegans cosmid ZK616, complete sequence
          Length = 35820

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   ggagacgatcctcttatgat 472
             ||||||||||||||||||||
Sbjct: 25773 ggagacgatcctcttatgat 25792
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>gb|AC124524.3| Mus musculus BAC clone RP23-402C9 from chromosome 14, complete sequence
          Length = 213751

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   cttcagccaagaaacacaaa 177
             ||||||||||||||||||||
Sbjct: 91652 cttcagccaagaaacacaaa 91633
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>gb|AC004740.1| Homo sapiens PAC clone RP4-631B17 from 7, complete sequence
          Length = 127270

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  attagtaccaaaacttctgt 142
            ||||||||||||||||||||
Sbjct: 3491 attagtaccaaaacttctgt 3472
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>emb|AL391870.16| Human DNA sequence from clone RP11-491C24 on chromosome 9 Contains part
             of the CDK5RAP2 gene for CDK5 regulatory subunit
             associated protein 2 (C48) and a CpG island, complete
             sequence
          Length = 46372

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ttcagccaagaaacacaaaa 178
             ||||||||||||||||||||
Sbjct: 25327 ttcagccaagaaacacaaaa 25346
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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains
             part of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   atgagattcatggccaggca 355
             ||||||||||||||||||||
Sbjct: 30253 atgagattcatggccaggca 30234
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>gb|AC114297.2| Homo sapiens chromosome 5 clone RP11-124B7, complete sequence
          Length = 158406

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    caaaacttctgtgcacatta 150
              ||||||||||||||||||||
Sbjct: 153745 caaaacttctgtgcacatta 153726
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>gb|AC098483.2| Homo sapiens chromosome 1 clone RP11-438F14, complete sequence
          Length = 177865

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    acaggactcagcaaaagcagttca 46
             ||||||| ||||||||||||||||
Sbjct: 31421 acaggacacagcaaaagcagttca 31398
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>ref|NM_001028445.1| Caenorhabditis elegans Enhancer of HAND mutation hnd-1 family
           member (ehn-3) (ehn-3) mRNA, complete cds
          Length = 657

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 ggagacgatcctcttatgat 472
           ||||||||||||||||||||
Sbjct: 140 ggagacgatcctcttatgat 121
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>ref|NM_001028446.1| Caenorhabditis elegans Enhancer of HAND mutation hnd-1 family
           member (ehn-3) (ehn-3) mRNA, complete cds
          Length = 528

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 ggagacgatcctcttatgat 472
           ||||||||||||||||||||
Sbjct: 140 ggagacgatcctcttatgat 121
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>ref|NM_001028444.1| Caenorhabditis elegans Enhancer of HAND mutation hnd-1 family
           member (ehn-3) (ehn-3) mRNA, complete cds
          Length = 789

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 ggagacgatcctcttatgat 472
           ||||||||||||||||||||
Sbjct: 272 ggagacgatcctcttatgat 253
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 168     gaaacacaaaaccttcaagt 187
               ||||||||||||||||||||
Sbjct: 2684697 gaaacacaaaaccttcaagt 2684678
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>gb|AC022108.4|AC022108 Homo sapiens chromosome 5 clone CTC-426B10, complete sequence
          Length = 235599

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    caaaacttctgtgcacatta 150
              ||||||||||||||||||||
Sbjct: 179590 caaaacttctgtgcacatta 179609
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>gb|AC138089.2| Homo sapiens chromosome 1 clone RP11-407H12, complete sequence
          Length = 174987

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     acaggactcagcaaaagcagttca 46
              ||||||| ||||||||||||||||
Sbjct: 155643 acaggacacagcaaaagcagttca 155666
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>dbj|AP002458.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T22C2
          Length = 67517

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   cagattagtaccaaaacttc 139
             ||||||||||||||||||||
Sbjct: 15291 cagattagtaccaaaacttc 15310
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>gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, complete sequence
          Length = 120685

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tctgcagccatgagattcat 346
             ||||||||||||||||||||
Sbjct: 60932 tctgcagccatgagattcat 60951
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>emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE
          Length = 136068

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   caggcaattagtatacagtt 369
             ||||||||||||||||||||
Sbjct: 67667 caggcaattagtatacagtt 67686
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>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete
             sequence
          Length = 225179

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   tctgcagccatgagattcat 346
             ||||||||||||||||||||
Sbjct: 39921 tctgcagccatgagattcat 39902
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>emb|CT010428.13| Mouse DNA sequence from clone RP23-304G18 on chromosome 13, complete
              sequence
          Length = 226457

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tacagttcacatggggtgag 382
              ||||||||||||||||||||
Sbjct: 176873 tacagttcacatggggtgag 176892
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>gb|AC142258.4| Mus musculus BAC clone RP24-511I20 from 13, complete sequence
          Length = 159880

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tacagttcacatggggtgag 382
             ||||||||||||||||||||
Sbjct: 14460 tacagttcacatggggtgag 14479
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>dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22D23, TM0409,
             complete sequence
          Length = 93754

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   accttcaagtcctgatacat 197
             ||||||||||||||||||||
Sbjct: 72069 accttcaagtcctgatacat 72050



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   accttcaagtcctgatacat 197
             ||||||||||||||||||||
Sbjct: 47620 accttcaagtcctgatacat 47601
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>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134,
             complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   accttcaagtcctgatacat 197
             ||||||||||||||||||||
Sbjct: 16305 accttcaagtcctgatacat 16324
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>dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT02D01, TM0039,
             complete sequence
          Length = 91268

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   accttcaagtcctgatacat 197
             ||||||||||||||||||||
Sbjct: 71571 accttcaagtcctgatacat 71590
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>dbj|AP004482.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT17C05, TM0014,
             complete sequence
          Length = 129532

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   accttcaagtcctgatacat 197
             ||||||||||||||||||||
Sbjct: 58740 accttcaagtcctgatacat 58759


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,713,030
Number of Sequences: 3902068
Number of extensions: 3713030
Number of successful extensions: 64848
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64703
Number of HSP's gapped (non-prelim): 139
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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