>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
           protein)
          Length = 894

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -1

Query: 384 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 262
           L+A L EMGF DR+ N +LL K+  +I + V +L+     D
Sbjct: 848 LMAHLFEMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888

>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1|
          Length = 354

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 14/35 (40%), Positives = 26/35 (74%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 277
           L++L+EMGF D E N + L ++GG+++ A+  L++
Sbjct: 318 LSQLNEMGFVDFERNVQALRRSGGNVQGAIESLLS 352

>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein)
          Length = 983

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 384  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 262
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 937  LMAHLFEMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977

>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2) (1A1-3B)
          Length = 966

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 384  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 262
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 920  LMARLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960

>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2)
          Length = 988

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 384  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 262
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 942  LMAHLFEMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982

>GTS1_YEAST (P40956) Protein GTS1 (Protein LSR1)|
          Length = 396

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAV 292
           LAEL +MGF D   N + L+   G+I RA+
Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNINRAI 228

>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 271
           L +LS MGF +RE N + L   GG I  A+  L+  +
Sbjct: 544 LEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQ 580

>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 271
           L +LS MGF +RE N + L   GG I  A+  L+  +
Sbjct: 544 LEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQ 580

>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1) (hPLIC-1)
          Length = 589

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 271
           L +LS MGF +RE N + L   GG I  A+  L+  +
Sbjct: 551 LEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQ 587

>Y048_MYCPN (P75066) Hypothetical protein MPN048 (D09_orf518)|
          Length = 518

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 110 NIIKFTPHTESHTNKSSQQFIGKLR 184
           N +KFTPH + H +  ++QF+ KL+
Sbjct: 461 NQLKFTPHVKEHVHVENKQFMEKLK 485

>UBQL4_MOUSE (Q99NB8) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 596

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 271
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 558 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 594

>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 271
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 563 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 599

>CCNT1_HORSE (Q9XT26) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 727

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 16  HIGPSTHNS*IVGTEQLSRLQQPHAADPPRSQHNKVHTAHRKSHQQV 156
           H  P  HNS      +    ++ H   P    H+  H +H+ SH Q+
Sbjct: 489 HAAPDKHNSIDDSVTKSREHKEKHKTHPSNHHHHHNHHSHKHSHSQL 535

>ENV_VILVK (P35954) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 983

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 218 IYICLNNETVCPVVCL*TAVKTCWCDFL-CAV*TLLCCDRGGSAACGCCNRLSCSVP 51
           + IC  N T+  ++   T   T W  +  C+       DR GS   G  N L CS+P
Sbjct: 509 VIICRQNSTITGIMGTNTNWTTMWNIYQNCSRCNNSSLDRTGSGTLGTVNNLKCSLP 565

>ENV_VILV (P03379) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 982

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 218 IYICLNNETVCPVVCL*TAVKTCWCDFL-CAV*TLLCCDRGGSAACGCCNRLSCSVP 51
           + IC  N T+  ++   T   T W  +  C+       DR GS   G  N L CS+P
Sbjct: 509 VIICRQNSTITGIMGTNTNWTTMWNIYQNCSRCNNSSLDRTGSGTLGTVNNLKCSLP 565

>UBQL2_MOUSE (Q9QZM0) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
           homolog) (Chap1)
          Length = 638

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 271
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 600 LEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQ 636

>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB|
          Length = 539

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 64  LSRLQQPHAADPPRSQHNK 120
           L R+ +PHA+DPPR  H++
Sbjct: 468 LERMSRPHASDPPRPWHDR 486

>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2)
           (DSK2 homolog) (Chap1)
          Length = 624

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 271
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 586 LEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQ 622

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 58  EQLSRLQQPHAADPPRSQHNKVHTAHR 138
           +Q S+LQ PH+  PP  QH + H  H+
Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQ 432

>KRA57_HUMAN (Q6L8G8) Keratin-associated protein 5-7 (Keratin-associated protein|
           5.7) (Ultrahigh sulfur keratin-associated protein 5.7)
           (Keratin-associated protein 5-3) (Keratin-associated
           protein 5.3)
          Length = 165

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -2

Query: 209 CLNNETVCPVVCL*TAVKTCWCDFLCAV*TLLCCDRGGSAACG-CCNRLSCSVP 51
           C  +    P  C  +  K C C   C      CC    S+ C  CC++ SC VP
Sbjct: 111 CCQSSCCKPCCCQSSCCKPCCCSSGCGS---SCCQ---SSCCNPCCSQSSCCVP 158

>DSK2_YEAST (P48510) Ubiquitin domain-containing protein DSK2|
          Length = 373

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLI 280
           L +L++MGF D + N   L ++GGS++ A+  L+
Sbjct: 336 LRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 369

>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)|
          Length = 182

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 155 TCWCDFLCAV*TLLC--CDRGGSAACGCCNRLSCSVP 51
           +C     C V    C  C +GG  +CG C++ SC VP
Sbjct: 140 SCCVPVCCCVPACSCSSCGKGGCGSCG-CSQSSCCVP 175

>MT4_MOUSE (P47945) Metallothionein-4 (MT-4) (Metallothionein-IV) (MT-IV)|
          Length = 62

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -2

Query: 236 TYLSXSIYICLNNETVCPVVCL*TAVKTCW--CDFLCAV*TLLCCDRGGSAACGCC 75
           T +S  I IC +N   C      T  K+C   C   CA     C  +GGS  C CC
Sbjct: 7   TCMSGGICICGDN-CKCTTCSCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSCC 61

>KNOX3_MAIZE (P56661) Homeobox protein knotted-1-like 3 (Fragment)|
          Length = 88

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 354 DDRETNKELLAKNGGSIKRAVMDLIAREKKDK 259
           DD+E  K+LL K  G +     +L  + KKDK
Sbjct: 1   DDKELKKQLLRKYSGCLGNLRKELCKKRKKDK 32

>ENV_VILV1 (P23422) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 989

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 218 IYICLNNETVCPVVCL*TAVKTCWCDFL-CAV*TLLCCDRGGSAACGCCNRLSCSVP 51
           + IC  N T+  ++   T   T W  +  C+       DR G+   G  N L CS+P
Sbjct: 509 VIICRQNSTITGIMGTNTNWTTMWNIYQNCSKCNNSSLDRTGNGTLGTVNDLKCSLP 565

>UBQL3_HUMAN (Q9H347) Ubiquilin-3|
          Length = 655

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDL 283
           L +L  MGF +RE N + L   GG +  AV  L
Sbjct: 620 LEQLRSMGFLNREANLQALIATGGDVDAAVEKL 652

>ENV_VILV2 (P23423) Env polyprotein (Coat polyprotein) [Contains: Leader|
           peptide; Exterior membrane glycoprotein; Transmembrane
           glycoprotein]
          Length = 991

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 218 IYICLNNETVCPVVCL*TAVKTCWCDFL-CAV*TLLCCDRGGSAACGCCNRLSCSVP 51
           + IC  N T+  ++   T   T W  +  C+       DR G    G  N L CS+P
Sbjct: 509 VIICRQNSTITGIMGTNTNWTTMWNIYQNCSKCNNSSLDRTGKGTLGTVNDLKCSLP 565

>UCP3_SCHPO (O74345) UBA domain-containing protein 3|
          Length = 601

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 381 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLI 280
           L+ L +MGF D   N   L +  G + RA+  ++
Sbjct: 162 LSTLHDMGFSDDSVNTHALEETNGDVTRAIEKIV 195

>PMD1_YEAST (P32634) Negative regulator of sporulation PMD1|
          Length = 1753

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 110 NIIKFTPHTESHTNK---SSQQFIGKLRDTLSR 199
           NII F+PHT S T K   SSQ   G L    S+
Sbjct: 639 NIISFSPHTASKTTKFGNSSQSSNGSLEKYFSK 671

>MT4_CANFA (Q9TUI5) Metallothionein-4 (MT-4) (Metallothionein-IV) (MT-IV)|
          Length = 62

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -2

Query: 236 TYLSXSIYICLNNETVCPVVCL*TAVKTCW--CDFLCAV*TLLCCDRGGSAACGCC 75
           T +S  I IC +N   C      T  K+C   C   CA     C  +GGS  C CC
Sbjct: 7   TCMSGGICICGDN-CKCTTCNCKTCRKSCCPCCPPGCAKCAQGCICKGGSDKCSCC 61

>PANX2_HUMAN (Q96RD6) Pannexin-2|
          Length = 633

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = -2

Query: 266 RTSEDRELSNTYLSXSIYICLNNETVCPVVCL*TAVKTCWCDFLCAV*TLLCCDRGGSAA 87
           R      L+  YL+  + I L +      +C   A +    +F CA    L     G+A 
Sbjct: 206 RRGRSNFLAKLYLARHVLILLLSAVPISYLCTYYATQK-QNEFTCA----LGASPDGAAG 260

Query: 86  CGCCNRLSCSVPTIQL 39
            G   R+SC +P++QL
Sbjct: 261 AGPAVRVSCKLPSVQL 276

>MT_PARLI (P80367) Metallothionein (MT)|
          Length = 65

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 158 KTCWCDFLCAV*TLLCCDRGGSAACGCCNRLSC 60
           K C C       T  CC  G S  CG C+  +C
Sbjct: 12  KQCPCAGQECCITGKCCKDGASVCCGTCSNAAC 44

>CCNT1_HUMAN (O60563) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 726

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +1

Query: 16  HIGPSTHNS*IVGTEQLSRLQQPHAADPPRSQHNKVHTAHRKSHQQV 156
           H     HNS      +    ++ H   P    H+  H +H+ SH Q+
Sbjct: 487 HAAADKHNSVEDSVTKSREHKEKHKTHPSNHHHHHNHHSHKHSHSQL 533

>CCNT1_PANTR (Q8HXN7) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 725

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +1

Query: 16  HIGPSTHNS*IVGTEQLSRLQQPHAADPPRSQHNKVHTAHRKSHQQV 156
           H     HNS      +    ++ H   P    H+  H +H+ SH Q+
Sbjct: 486 HAAADKHNSVEDSVTKSREHKEKHKTHPSNHHHHHNHHSHKHSHSQL 532

>RNF31_MOUSE (Q924T7) RING finger protein 31|
          Length = 1066

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 375 ELSEMGFDDRETNKELLAKNGGSIKRAVMDL 283
           EL  +GF  +E + + L ++GG + RA+ +L
Sbjct: 576 ELQSLGFGPKEGSLQALFQHGGDVARALTEL 606


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,259,920
Number of Sequences: 219361
Number of extensions: 949362
Number of successful extensions: 2754
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2749
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)