ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16o20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596599.1| Saccharum officinarum clone SCEPLR1008G04, complete sequence Length = 3065 Score = 159 bits (80), Expect = 8e-36 Identities = 107/116 (92%) Strand = Plus / Minus Query: 248 cacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgtttgatg 307 |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct: 2754 cacgatcttcacttgtcctttttctccctggcaatgaggtccatcacagctcgcttgatg 2695 Query: 308 cttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatcccat 363 ||||| |||||||| |||||||||||||||||| ||| |||||||||||||||| Sbjct: 2694 cttcccccattcttcgcaagcagctccttgttcacctctgtgtcatcaaatcccat 2639
>gb|AY108354.1| Zea mays PCO112404 mRNA sequence Length = 2108 Score = 159 bits (80), Expect = 8e-36 Identities = 107/116 (92%) Strand = Plus / Minus Query: 248 cacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgtttgatg 307 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 1737 cacgatcttcacttgtccttcttctccctggcaatgagctccatcacagctcgcttgatg 1678 Query: 308 cttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatcccat 363 ||||| ||||||| |||||||||||||||||| |||| |||||||||||||||| Sbjct: 1677 cttccctcattcttcgcaagcagctccttgttcatctctgtgtcatcaaatcccat 1622
>ref|XM_466502.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3112 Score = 113 bits (57), Expect = 4e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 2804 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 2745 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatccc 361 |||||||||||||| ||||| | |||| ||||||||| |||| |||| ||||| ||| Sbjct: 2744 ttgatgcttcctccgttcttctcgagcatctccttgtttatctcagtgtcctcaaagccc 2685 Query: 362 atttc 366 ||||| Sbjct: 2684 atttc 2680
>ref|XM_506848.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0016G10.28-1 mRNA Length = 3152 Score = 113 bits (57), Expect = 4e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 2844 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 2785 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatccc 361 |||||||||||||| ||||| | |||| ||||||||| |||| |||| ||||| ||| Sbjct: 2784 ttgatgcttcctccgttcttctcgagcatctccttgtttatctcagtgtcctcaaagccc 2725 Query: 362 atttc 366 ||||| Sbjct: 2724 atttc 2720
>dbj|AK099686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E12, full insert sequence Length = 3112 Score = 113 bits (57), Expect = 4e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 2804 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 2745 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatccc 361 |||||||||||||| ||||| | |||| ||||||||| |||| |||| ||||| ||| Sbjct: 2744 ttgatgcttcctccgttcttctcgagcatctccttgtttatctcagtgtcctcaaagccc 2685 Query: 362 atttc 366 ||||| Sbjct: 2684 atttc 2680
>dbj|AK072838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141P19, full insert sequence Length = 3149 Score = 113 bits (57), Expect = 4e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 2841 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 2782 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatccc 361 |||||||||||||| ||||| | |||| ||||||||| |||| |||| ||||| ||| Sbjct: 2781 ttgatgcttcctccgttcttctcgagcatctccttgtttatctcagtgtcctcaaagccc 2722 Query: 362 atttc 366 ||||| Sbjct: 2721 atttc 2717
>dbj|AK060817.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A04, full insert sequence Length = 1619 Score = 113 bits (57), Expect = 4e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 1306 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 1247 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatccc 361 |||||||||||||| ||||| | |||| ||||||||| |||| |||| ||||| ||| Sbjct: 1246 ttgatgcttcctccgttcttctcgagcatctccttgtttatctcagtgtcctcaaagccc 1187 Query: 362 atttc 366 ||||| Sbjct: 1186 atttc 1182
>dbj|AK071429.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095L03, full insert sequence Length = 2010 Score = 109 bits (55), Expect = 7e-21 Identities = 106/123 (86%) Strand = Plus / Minus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 1702 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 1643 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgttcgtctccctgtcatcaaatccc 361 |||||||||||||| ||||| | |||| ||||||||| |||| |||| ||||| ||| Sbjct: 1642 ttgatgcttcctccgttcttctcgagcatctccttgtttatctcagtgtcctcaaagccc 1583 Query: 362 att 364 ||| Sbjct: 1582 att 1580
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 107 bits (54), Expect = 3e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 23001565 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 23001624 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgtt 339 |||||||||||||| ||||| | |||| ||||||||| Sbjct: 23001625 ttgatgcttcctccgttcttctcgagcatctccttgtt 23001662
>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1067_B01 Length = 100525 Score = 107 bits (54), Expect = 3e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 25962 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 26021 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgtt 339 |||||||||||||| ||||| | |||| ||||||||| Sbjct: 26022 ttgatgcttcctccgttcttctcgagcatctccttgtt 26059
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 107 bits (54), Expect = 3e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 242 agagctcacgatcttcacttgtccttcttctccctggcgatgaggtccatcacagctcgt 301 ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct: 121367 agagcacacgatcttcactggtctttcttctccctagcgatgaggtccatcacagcccgc 121426 Query: 302 ttgatgcttcctccattcttggcaagcagctccttgtt 339 |||||||||||||| ||||| | |||| ||||||||| Sbjct: 121427 ttgatgcttcctccgttcttctcgagcatctccttgtt 121464
>emb|AJ575228.1|OSA575228 Oryza sativa (japonica cultivar-group) partial mRNA for TA4 protein Length = 627 Score = 93.7 bits (47), Expect = 4e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 256 tcacttgtccttcttctccctggcgatgaggtccatcacagctcgtttgatgcttcctcc 315 ||||| ||| ||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 627 tcactggtctttcttctccctagcgatgaggtccatcacagcccgcttgatgcttcctcc 568 Query: 316 attcttggcaagcagctccttgttcgtctccctgtcatcaaatcccatttc 366 ||||| | |||| ||||||||| |||| |||| ||||| |||||||| Sbjct: 567 gttcttctcgagcatctccttgtttatctcagtgtcctcaaagcccatttc 517
>gb|AY098509.1| Ananas comosus PFE18 protein mRNA, partial cds Length = 1174 Score = 44.1 bits (22), Expect = 0.33 Identities = 70/86 (81%) Strand = Plus / Minus Query: 266 ttcttctccctggcgatgaggtccatcacagctcgtttgatgcttcctccattcttggca 325 ||||||||| ||||| |||||||||||| || || |||||||| || || ||||| | Sbjct: 921 ttcttctcctcggcgacgaggtccatcacggcgcgcttgatgctcccgccgttcttctcc 862 Query: 326 agcagctccttgttcgtctccctgtc 351 |||| || ||||||| ||||| |||| Sbjct: 861 agcatcttcttgttcctctccttgtc 836
>emb|AL354803.24| Human DNA sequence from clone RP11-539I23 on chromosome 13 Contains the 5' end of a novel gene, complete sequence Length = 179380 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aaagtcacaccaacaagtctt 158 ||||||||||||||||||||| Sbjct: 107912 aaagtcacaccaacaagtctt 107932
>gb|AC123863.4| Mus musculus BAC clone RP23-364A19 from chromosome 5, complete sequence Length = 218179 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ttaggcatatataaatagat 222 |||||||||||||||||||| Sbjct: 136844 ttaggcatatataaatagat 136863
>gb|AC133476.2| Homo sapiens 3 BAC RP11-73O12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 67388 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cacttgtccttcttctccct 276 |||||||||||||||||||| Sbjct: 21235 cacttgtccttcttctccct 21216
>emb|BX248384.10| Zebrafish DNA sequence from clone CH211-233C3 in linkage group 8, complete sequence Length = 155293 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 ttatttaggcatatataaatagat 222 |||||||||||||||| ||||||| Sbjct: 46776 ttatttaggcatatattaatagat 46799
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tccttcttctccctggcgat 282 |||||||||||||||||||| Sbjct: 4588352 tccttcttctccctggcgat 4588371 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,072,497 Number of Sequences: 3902068 Number of extensions: 3072497 Number of successful extensions: 55136 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55081 Number of HSP's gapped (non-prelim): 55 length of query: 384 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 362 effective length of database: 17,147,199,772 effective search space: 6207286317464 effective search space used: 6207286317464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
