ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16o19 |
|---|---|
| Clone Library Name | barley_pub |
>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 894 Score = 34.3 bits (77), Expect = 0.37 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = -3 Query: 367 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 245 L+A L EMGF DR+ N +LL K+ +I + V +L+ D Sbjct: 848 LMAHLFEMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888
>UBQL2_MOUSE (Q9QZM0) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)| (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1) Length = 638 Score = 33.9 bits (76), Expect = 0.48 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 9/131 (6%) Frame = -3 Query: 619 TTPAEVPTSLLTSIPVDLTVAATAPVDVASALLDIDRXXXXXXXXXXXEMGFKQVDLNKE 440 T PA P S T IP TV+++AP + S + Sbjct: 533 TGPASSPGSTGTGIPPATTVSSSAPTETISPTSESG------------------------ 568 Query: 439 ILRQNKYNLEQSVDDLCGVNEWDP---------LLAELSEMGFDDRETNKELLAKNGGSI 287 N+ ++Q V L G + P L +L+ MGF +RE N + L GG I Sbjct: 569 ---PNQQFIQQMVQALTGGSPPQPPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDI 625 Query: 286 KRAVMDLIARE 254 A+ L+ + Sbjct: 626 NAAIERLLGSQ 636
>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1| Length = 354 Score = 33.9 bits (76), Expect = 0.48 Identities = 14/35 (40%), Positives = 26/35 (74%) Frame = -3 Query: 364 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 260 L++L+EMGF D E N + L ++GG+++ A+ L++ Sbjct: 318 LSQLNEMGFVDFERNVQALRRSGGNVQGAIESLLS 352
>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 983 Score = 33.5 bits (75), Expect = 0.63 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -3 Query: 367 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 245 L+A L EMGF DR+ N LL K+ +I + V +L+ D Sbjct: 937 LMAHLFEMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977
>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) (1A1-3B) Length = 966 Score = 33.5 bits (75), Expect = 0.63 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -3 Query: 367 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 245 L+A L EMGF DR+ N LL K+ +I + V +L+ D Sbjct: 920 LMARLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960
>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) (hPLIC-1) Length = 589 Score = 33.1 bits (74), Expect = 0.83 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = -3 Query: 415 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 260 ++Q + L GVN + L +LS MGF +RE N + L GG I A+ L+ Sbjct: 526 IQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 585 Query: 259 RE 254 + Sbjct: 586 SQ 587
>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) Length = 988 Score = 33.1 bits (74), Expect = 0.83 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -3 Query: 367 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 245 L+A L EMGF DR+ N LL K+ +I + V +L+ D Sbjct: 942 LMAHLFEMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -3 Query: 472 MGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWD 371 MGF LN +LR++ YN+ Q V +L VN D Sbjct: 949 MGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982
>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 33.1 bits (74), Expect = 0.83 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = -3 Query: 415 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 260 ++Q + L GVN + L +LS MGF +RE N + L GG I A+ L+ Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578 Query: 259 RE 254 + Sbjct: 579 SQ 580
>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 33.1 bits (74), Expect = 0.83 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = -3 Query: 415 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 260 ++Q + L GVN + L +LS MGF +RE N + L GG I A+ L+ Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578 Query: 259 RE 254 + Sbjct: 579 SQ 580
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -3 Query: 694 SSENAAGFVPSVNVLAPEVIPEXSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 524 SS +G PS+ A + S T P+ P + T IP +LT AT P +S + Sbjct: 3878 SSTQTSGTPPSLITTATTITATGSTTNPSSTPGT--TPIPPELTTTATTPAATSSTV 3932 Score = 32.0 bits (71), Expect = 1.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 694 SSENAAGFVPSVNVLAPEVIPEXSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 524 SS +G PS+ A + S T P+ P + T IP LT AT P +S + Sbjct: 3349 SSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAATSSTV 3403 Score = 32.0 bits (71), Expect = 1.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 694 SSENAAGFVPSVNVLAPEVIPEXSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 524 SS +G PS+ A + S T P+ P + T IP LT AT P +S + Sbjct: 2122 SSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAATSSTV 2176 Score = 30.4 bits (67), Expect = 5.4 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = -3 Query: 694 SSENAAGFVPSVNVLAPEVIPEXSATTPAEVPTSLLTSIPVDLTVAATAPVDVAS 530 SS +G PS+ A + S T P+ P + T IP LT AT P +S Sbjct: 4610 SSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTSMATTPAATSS 4662 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -3 Query: 694 SSENAAGFVPSVNVLAPEVIPEXSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 524 SS +G PS+ A + S T P+ P + IP LT AT P +S + Sbjct: 2651 SSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--RPIPPVLTTTATTPAATSSTV 2705
>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)| (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1) Length = 624 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Frame = -3 Query: 427 NKYNLEQSVDDLCGVN---------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 275 N+ ++Q V L G N + L +L+ MGF +RE N + L GG I A+ Sbjct: 556 NQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAI 615 Query: 274 MDLIARE 254 L+ + Sbjct: 616 ERLLGSQ 622
>UBL7_MOUSE (Q91W67) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)| Length = 380 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 382 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 275 ++W P L +L +MG D E + L GG I+ A+ Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371
>UBL7_HUMAN (Q96S82) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)| (Bone marrow stromal cell ubiquitin-like protein) (BMSC-UbP) Length = 380 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 382 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 275 ++W P L +L +MG D E + L GG I+ A+ Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371
>MT1_CANGA (P15113) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 62 Score = 31.2 bits (69), Expect = 3.1 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -2 Query: 686 KCSWFCAKC*CTCTGSHSGTFCDYTR*SAHKFAY*YPCGSD-RSCNRTCGCG 534 KC C+ C G G C+ + S H CGS SC+ +CGCG Sbjct: 5 KCPNGCSCPNCANGGCQCGDKCECKKQSCHGCGEQCKCGSHGSSCHGSCGCG 56
>GTS1_YEAST (P40956) Protein GTS1 (Protein LSR1)| Length = 396 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -3 Query: 364 LAELSEMGFDDRETNKELLAKNGGSIKRAV 275 LAEL +MGF D N + L+ G+I RA+ Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNINRAI 228
>UBQL4_MOUSE (Q99NB8) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein| A1U) Length = 596 Score = 30.4 bits (67), Expect = 5.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 364 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 254 L +L+ MGF +RE N + L GG I A+ L+ + Sbjct: 558 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 594
>SYM_STRR6 (P67581) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 665 Score = 30.4 bits (67), Expect = 5.4 Identities = 24/68 (35%), Positives = 34/68 (50%) Frame = -3 Query: 451 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 272 LN+ + NKY Q + GV E+D +LAE++E D T+ E A + AV Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426 Query: 271 DLIAREKK 248 LI+R K Sbjct: 427 TLISRTNK 434
>SYM_STRPN (P67580) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 665 Score = 30.4 bits (67), Expect = 5.4 Identities = 24/68 (35%), Positives = 34/68 (50%) Frame = -3 Query: 451 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 272 LN+ + NKY Q + GV E+D +LAE++E D T+ E A + AV Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426 Query: 271 DLIAREKK 248 LI+R K Sbjct: 427 TLISRTNK 434
>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein| A1U) Length = 601 Score = 30.4 bits (67), Expect = 5.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 364 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 254 L +L+ MGF +RE N + L GG I A+ L+ + Sbjct: 563 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 599
>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB| Length = 539 Score = 29.6 bits (65), Expect = 9.1 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +2 Query: 47 LSRLQQPHAADPPRSQHNK 103 L R+ +PHA+DPPR H++ Sbjct: 468 LERMSRPHASDPPRPWHDR 486
>Y048_MYCPN (P75066) Hypothetical protein MPN048 (D09_orf518)| Length = 518 Score = 29.6 bits (65), Expect = 9.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 93 NIIKFTPHTXSHTNKSSQQFIGKLR 167 N +KFTPH H + ++QF+ KL+ Sbjct: 461 NQLKFTPHVKEHVHVENKQFMEKLK 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,571,985 Number of Sequences: 219361 Number of extensions: 1912243 Number of successful extensions: 5728 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5382 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5712 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
