ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17d18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 206 1e-50
2gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 206 1e-50
3emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 206 1e-50
4emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 198 3e-48
5emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 176 1e-41
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 86 3e-14
7emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 42 0.46
8gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.46
9gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 1.8
10gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.8
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.8
12gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 1.8
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
15dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
16dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
17emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 1.8
18gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, compl... 38 7.1
19gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome... 38 7.1
20gb|AC105980.13| Mus musculus chromosome 3, clone RP24-234E11, co... 38 7.1
21gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome ... 38 7.1
22gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosom... 38 7.1
23gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosom... 38 7.1
24gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, comp... 38 7.1
25gb|AC164544.4| Mus musculus chromosome 1, clone RP24-163G4, comp... 38 7.1
26gb|AC110622.6| Mus musculus BAC clone RP23-204H3 from chromosome... 38 7.1
27gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosom... 38 7.1
28gb|AC109233.10| Mus musculus chromosome 16, clone RP23-219N5, co... 38 7.1
29emb|AL354997.17| Human DNA sequence from clone RP11-309H8 on chr... 38 7.1
30gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complet... 38 7.1
31gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 38 7.1
32gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome... 38 7.1
33gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, co... 38 7.1
34gb|AC147185.2| Mus musculus BAC clone RP24-119J12 from 8, comple... 38 7.1
35gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, comple... 38 7.1
36emb|AL627128.16| Mouse DNA sequence from clone RP23-133J9 on chr... 38 7.1
37emb|AL627103.13| Mouse DNA sequence from clone RP23-414M10 on ch... 38 7.1
38emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on ch... 38 7.1
39gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, compl... 38 7.1 
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  206 bits (104), Expect = 1e-50
 Identities = 135/148 (91%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgaacatggacatacacatattcttaggaacaaataaganagatnaatggaganggn 60
           |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || 
Sbjct: 625 acatgaacatggacatacacatattcttaggaacaaataagaaagataaatggagaagga 566

                                                                       
Query: 61  aaacccaaagcnatgtcagagtngacaaaactgnaatggcactttatatgtggcccatcg 120
           ||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||  |||
Sbjct: 565 aaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatatggcctgtcg 506

                                       
Query: 121 tcagtgagctgttnatgccttgccggac 148
           | ||||||||||| | ||||||||||||
Sbjct: 505 tgagtgagctgtttaggccttgccggac 478
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>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  206 bits (104), Expect = 1e-50
 Identities = 135/148 (91%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgaacatggacatacacatattcttaggaacaaataaganagatnaatggaganggn 60
           |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || 
Sbjct: 199 acatgaacatggacatacacatattcttaggaacaaataagaaagataaatggagaagga 140

                                                                       
Query: 61  aaacccaaagcnatgtcagagtngacaaaactgnaatggcactttatatgtggcccatcg 120
           ||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||  |||
Sbjct: 139 aaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatatggcctgtcg 80

                                       
Query: 121 tcagtgagctgttnatgccttgccggac 148
           | ||||||||||| | ||||||||||||
Sbjct: 79  tgagtgagctgtttaggccttgccggac 52
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>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  206 bits (104), Expect = 1e-50
 Identities = 135/148 (91%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgaacatggacatacacatattcttaggaacaaataaganagatnaatggaganggn 60
           |||||||||||||||||||||||||||||||||||||||||| |||| |||||| | || 
Sbjct: 746 acatgaacatggacatacacatattcttaggaacaaataagaaagataaatggacaagga 687

                                                                       
Query: 61  aaacccaaagcnatgtcagagtngacaaaactgnaatggcactttatatgtggcccatcg 120
           ||||||||||| |||||||||| |||||||||| |||||||||||||||| ||||| | |
Sbjct: 686 aaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatgcggcccgtgg 627

                                       
Query: 121 tcagtgagctgttnatgccttgccggac 148
           | ||||||||||| ||||||||||||||
Sbjct: 626 tgagtgagctgtttatgccttgccggac 599
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  198 bits (100), Expect = 3e-48
 Identities = 134/148 (90%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgaacatggacatacacatattcttaggaacaaataaganagatnaatggaganggn 60
           |||||||||||||||||||||||||||||||||||| ||||| |||  |||||||| || 
Sbjct: 474 acatgaacatggacatacacatattcttaggaacaagtaagaaagacaaatggagaagga 415

                                                                       
Query: 61  aaacccaaagcnatgtcagagtngacaaaactgnaatggcactttatatgtggcccatcg 120
           ||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| | |
Sbjct: 414 aaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatgtggcccgtgg 355

                                       
Query: 121 tcagtgagctgttnatgccttgccggac 148
           | ||||||||||| | ||||||||||||
Sbjct: 354 tgagtgagctgtttaggccttgccggac 327
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>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  176 bits (89), Expect = 1e-41
 Identities = 134/149 (89%), Gaps = 2/149 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgaacatggacatacacatattcttaggaacaaataaganagatnaatggaganggn 60
           |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || 
Sbjct: 706 acatgaacatggacatacacatattcttaggaacaaataagaaagataaatggagaagga 647

                                                                       
Query: 61  aaacccaaagcnatgtcagagtngacaaaactgnaatggcac-tttatatgtggcccatc 119
           ||||||||||| |||||||||| |||||||||| |||||||| |||||||  ||||  ||
Sbjct: 646 aaacccaaagcaatgtcagagttgacaaaactgcaatggcacttttatat-aggcctgtc 588

                                        
Query: 120 gtcagtgagctgttnatgccttgccggac 148
           || ||||||||||| | ||||||||||||
Sbjct: 587 gtgagtgagctgtttaggccttgccggac 559
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score = 85.7 bits (43), Expect = 3e-14
 Identities = 125/144 (86%), Gaps = 9/144 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgaacatggacatacacatattcttaggaacaaataaganagatnaatggaganggn 60
           ||||||||||||   |||||| ||| |||||||||| ||||| |||| |||||||| || 
Sbjct: 671 acatgaacatgggactacacacatt-ttaggaacaa-taagaaagat-aatggagaagga 615

                                                                       
Query: 61  aaacccaaagcnatgtcagagtngacaaaactgnaatggcactttatatgtggcccatcg 120
           |||||  |||| |||||||||| |||||| ||| |||||||||| ||||||| |||||||
Sbjct: 614 aaacc--aagc-atgtcagagttgacaaa-ctgcaatggcactt-atatgtg-cccatcg 561

                                   
Query: 121 tcagtgagctgttnatgccttgcc 144
           ||||||||||||| ||||||||||
Sbjct: 560 tcagtgagctgtttatgccttgcc 537
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      acatgaacatggacatacaca 21
              |||||||||||||||||||||
Sbjct: 152156 acatgaacatggacatacaca 152136
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>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    atgaacatggacatacacata 23
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0024K17 map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1    acatgaacatggacatacacatat 24
            ||||||||||| ||||||||||||
Sbjct: 4895 acatgaacatgaacatacacatat 4872
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
              map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      acatgaacatggacatacacatat 24
              ||||||||||| ||||||||||||
Sbjct: 123589 acatgaacatgaacatacacatat 123566
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 1        acatgaacatggacatacacatat 24
                ||||||||||| ||||||||||||
Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     atgaacatggacatacacatattc 26
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 1        acatgaacatggacatacacatat 24
                ||||||||||| ||||||||||||
Sbjct: 11682609 acatgaacatgaacatacacatat 11682586



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 1        acatgaacatggacatacacatat 24
                ||||||||||| ||||||||||||
Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 1        acatgaacatggacatacacatat 24
                ||||||||||| ||||||||||||
Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
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>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1026E06
          Length = 162784

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    acatgaacatggacatacacatat 24
            ||||||||||| ||||||||||||
Sbjct: 5348 acatgaacatgaacatacacatat 5371
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     acatgaacatggacatacacatat 24
             ||||||||||| ||||||||||||
Sbjct: 31151 acatgaacatgaacatacacatat 31128
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     atgaacatggacatacacat 22
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470
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>gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, complete sequence
          Length = 229200

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acatgaacatggacataca 19
             |||||||||||||||||||
Sbjct: 50812 acatgaacatggacataca 50794
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>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence
          Length = 239046

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 1      acatgaacatggacatacacata 23
              ||||||||||||||| |||||||
Sbjct: 206760 acatgaacatggacacacacata 206738
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>gb|AC105980.13| Mus musculus chromosome 3, clone RP24-234E11, complete sequence
          Length = 171161

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 1      acatgaacatggacatacacata 23
              |||||||||||||||| ||||||
Sbjct: 118045 acatgaacatggacatgcacata 118023
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>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete sequence
          Length = 209896

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     atacacatattcttaggaa 33
              |||||||||||||||||||
Sbjct: 165649 atacacatattcttaggaa 165667
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>gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosome 1, complete sequence
          Length = 241735

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acatgaacatggacataca 19
             |||||||||||||||||||
Sbjct: 94634 acatgaacatggacataca 94616
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>gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosome 1, complete sequence
          Length = 169725

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      acatgaacatggacataca 19
              |||||||||||||||||||
Sbjct: 163803 acatgaacatggacataca 163785



 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     acatgaacatggacataca 19
             |||||||||||||||||||
Sbjct: 33280 acatgaacatggacataca 33298
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>gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, complete sequence
          Length = 209942

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     aacatggacatacacatat 24
             |||||||||||||||||||
Sbjct: 43743 aacatggacatacacatat 43725
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>gb|AC164544.4| Mus musculus chromosome 1, clone RP24-163G4, complete sequence
          Length = 142689

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      acatgaacatggacataca 19
              |||||||||||||||||||
Sbjct: 126063 acatgaacatggacataca 126081
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>gb|AC110622.6| Mus musculus BAC clone RP23-204H3 from chromosome 8, complete sequence
          Length = 190632

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      acatggacatacacatatt 25
              |||||||||||||||||||
Sbjct: 134610 acatggacatacacatatt 134592
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>gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosome 12, complete
             sequence
          Length = 167106

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 1     acatgaacatggacatacacata 23
             ||||||||||||||| |||||||
Sbjct: 33283 acatgaacatggacacacacata 33261
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>gb|AC109233.10| Mus musculus chromosome 16, clone RP23-219N5, complete sequence
          Length = 271253

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 1      acatgaacatggacatacacata 23
              |||||||||||||||| ||||||
Sbjct: 211558 acatgaacatggacatgcacata 211580
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>emb|AL354997.17| Human DNA sequence from clone RP11-309H8 on chromosome 13 Contains two
              novel genes and a novel RING finger protein pseudogene,
              complete sequence
          Length = 156077

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      acatggacatacacatatt 25
              |||||||||||||||||||
Sbjct: 117389 acatggacatacacatatt 117407
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>gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complete sequence
          Length = 132337

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    acatgaacatggacataca 19
            |||||||||||||||||||
Sbjct: 3661 acatgaacatggacataca 3679
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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence
          Length = 205862

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 1      acatgaacatggacatacacata 23
              ||||||||||| |||||||||||
Sbjct: 118982 acatgaacatgcacatacacata 118960
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>gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome 8, complete sequence
          Length = 229472

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     acatgaacatggacataca 19
             |||||||||||||||||||
Sbjct: 64791 acatgaacatggacataca 64809
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>gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, complete sequence
          Length = 184147

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 2     catgaacatggacatacacatat 24
             |||||||||||||||||| ||||
Sbjct: 51514 catgaacatggacatacaaatat 51536
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>gb|AC147185.2| Mus musculus BAC clone RP24-119J12 from 8, complete sequence
          Length = 164789

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      acatggacatacacatatt 25
              |||||||||||||||||||
Sbjct: 161801 acatggacatacacatatt 161819
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>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     acatgaacatggacataca 19
             |||||||||||||||||||
Sbjct: 55429 acatgaacatggacataca 55447
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>emb|AL627128.16| Mouse DNA sequence from clone RP23-133J9 on chromosome 4, complete
             sequence
          Length = 183089

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     aacatggacatacacatat 24
             |||||||||||||||||||
Sbjct: 57921 aacatggacatacacatat 57903
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>emb|AL627103.13| Mouse DNA sequence from clone RP23-414M10 on chromosome 4, complete
             sequence
          Length = 194995

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 2     catgaacatggacatacacatat 24
             |||||||||| ||||||||||||
Sbjct: 65757 catgaacatgcacatacacatat 65735
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>emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on chromosome 11, complete
              sequence
          Length = 198761

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 1      acatgaacatggacatacacata 23
              ||||||||||| |||||||||||
Sbjct: 169388 acatgaacatgcacatacacata 169366
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>gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, complete sequence
          Length = 250160

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      acatgaacatggacataca 19
              |||||||||||||||||||
Sbjct: 204453 acatgaacatggacataca 204435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 786,373
Number of Sequences: 3902068
Number of extensions: 786373
Number of successful extensions: 42813
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42710
Number of HSP's gapped (non-prelim): 102
length of query: 148
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 127
effective length of database: 17,151,101,840
effective search space: 2178189933680
effective search space used: 2178189933680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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