ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 234 bits (118), Expect = 2e-58 Identities = 261/309 (84%), Gaps = 3/309 (0%) Strand = Plus / Minus Query: 68 gctgttacatgataatatccttgcaaacataaggaaccccctttatttttctttatcgga 127 ||||||||||||||||||||||||||||||| || | |||||||||||||| | | | Sbjct: 1277 gctgttacatgataatatccttgcaaacatagggcagtgcctttatttttcttcagcaaa 1218 Query: 128 gcacaccatccatacataaacaaagcacactgcaagggtacttcagagtatcccttgtta 187 ||| |||||||||||||||| ||||||||||| ||||||||| |||||| |||| Sbjct: 1217 gcaaaccatccatacataaataaagcacactgaaagggtactaaagagtacaacttg--- 1161 Query: 188 gataaacttttgagaaaggctttacttgtagacctcgatgacacctngngcacccatttt 247 ||||||||||| |||| || |||||||||||||||| |||||| | ||||||| ||| Sbjct: 1160 gataaacttttatgaaaccgttcacttgtagacctcgataacacctcgtgcacccagttt 1101 Query: 248 cttgataattntgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcattttc 307 ||||| |||| |||||||| | |||||||||||| ||||||| || |||||| |||||| Sbjct: 1100 cttgacaattttgtagtcgctaaaccctgctttcgtgaagagctcatgccagttattttc 1041 Query: 308 gctacgttgacggcccctcgtgaacacaagcatgagcatgtccatgagagtctgggcctc 367 || ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||| Sbjct: 1040 acttcgttgacggcctctcgtgaacacaagcatgaggatgtccatcagagtttgttcctt 981 Query: 368 aaacatgac 376 ||||||||| Sbjct: 980 aaacatgac 972
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 60.0 bits (30), Expect = 6e-06 Identities = 161/203 (79%), Gaps = 2/203 (0%) Strand = Plus / Minus Query: 216 tagacctcgatgacacctngngcacccattttcttgataattntgtagtcggtgaaccct 275 |||||||||| |||| || | ||||| | |||||| | ||| | ||||| |||| ||| Sbjct: 64471 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 64412 Query: 276 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 335 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 64411 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 64352 Query: 336 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 394 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 64351 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 64293 Query: 395 gaccacgatatcaatgacaatca 417 |||| |||||| |||||||||| Sbjct: 64292 aaccaagatatctatgacaatca 64270
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 6e-06 Identities = 161/203 (79%), Gaps = 2/203 (0%) Strand = Plus / Plus Query: 216 tagacctcgatgacacctngngcacccattttcttgataattntgtagtcggtgaaccct 275 |||||||||| |||| || | ||||| | |||||| | ||| | ||||| |||| ||| Sbjct: 11549317 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11549376 Query: 276 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 335 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 11549377 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11549436 Query: 336 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 394 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 11549437 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11549495 Query: 395 gaccacgatatcaatgacaatca 417 |||| |||||| |||||||||| Sbjct: 11549496 aaccaagatatctatgacaatca 11549518 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 268 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 308 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 11329653 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11329693 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 259 tgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 304 ||||||| |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 11294577 tgtagtccctgaagcctactttcatgaagagatctcgccaatcatt 11294622
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 6e-06 Identities = 161/203 (79%), Gaps = 2/203 (0%) Strand = Plus / Plus Query: 216 tagacctcgatgacacctngngcacccattttcttgataattntgtagtcggtgaaccct 275 |||||||||| |||| || | ||||| | |||||| | ||| | ||||| |||| ||| Sbjct: 11628506 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11628565 Query: 276 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 335 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 11628566 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11628625 Query: 336 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 394 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 11628626 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11628684 Query: 395 gaccacgatatcaatgacaatca 417 |||| |||||| |||||||||| Sbjct: 11628685 aaccaagatatctatgacaatca 11628707 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 268 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 308 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 11408842 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11408882 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 259 tgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 304 ||||||| |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 11373766 tgtagtccctgaagcctactttcatgaagagatctcgccaatcatt 11373811
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 268 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 308 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 116011 tgaagcctgctttcttgaagagatcacgccagtcattttcg 116051 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 259 tgtagtcggtgaaccctgctttcatgaagaggtctcgccagtcatt 304 ||||||| |||| ||| ||||||||||||| |||||||| ||||| Sbjct: 80935 tgtagtccctgaagcctactttcatgaagagatctcgccaatcatt 80980
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 268 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 308 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 1112 tgaagcctgctttcttgaagagatcacgccagtcattttcg 1072
>gb|AC007541.9| Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143444 Score = 42.1 bits (21), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 cttattgtttaatacttnaaaaaa 25 ||||||||||||||||| |||||| Sbjct: 72897 cttattgtttaatactttaaaaaa 72920
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 acaggtcctaatgatggttc 394 |||||||||||||||||||| Sbjct: 859378 acaggtcctaatgatggttc 859359
>gb|AC061710.16| Homo sapiens 3 BAC RP11-395F21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187657 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 ttagataaacttttgagaaa 204 |||||||||||||||||||| Sbjct: 100340 ttagataaacttttgagaaa 100321
>gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y, complete sequence Length = 156357 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ataaacaaagcacactgcaa 162 |||||||||||||||||||| Sbjct: 116672 ataaacaaagcacactgcaa 116691
>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24, complete sequence Length = 199820 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 acacaagcatgagcatgtccatga 354 |||||||||| ||||||||||||| Sbjct: 68031 acacaagcattagcatgtccatga 68008
>gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y, complete sequence Length = 174082 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ataaacaaagcacactgcaa 162 |||||||||||||||||||| Sbjct: 21693 ataaacaaagcacactgcaa 21674
>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y Length = 1351786 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ataaacaaagcacactgcaa 162 |||||||||||||||||||| Sbjct: 1174694 ataaacaaagcacactgcaa 1174675 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ataaacaaagcacactgcaa 162 |||||||||||||||||||| Sbjct: 1113516 ataaacaaagcacactgcaa 1113535
>gb|AC149314.2| Phakopsora pachyrhizi clone JGIAFNA-101K12, complete sequence Length = 35483 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 331 acacaagcatgagcatgtccatgagagt 358 |||||| ||||||||||| ||||||||| Sbjct: 12685 acacaatcatgagcatgtgcatgagagt 12658
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 40.1 bits (20), Expect = 5.6 Identities = 33/38 (86%) Strand = Plus / Minus Query: 215 gtagacctcgatgacacctngngcacccattttcttga 252 |||||||||||||||||| | || || |||||||||| Sbjct: 1103 gtagacctcgatgacaccacgagctccgattttcttga 1066
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24, complete sequence Length = 213091 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 acacaagcatgagcatgtccatga 354 |||||||||| ||||||||||||| Sbjct: 207721 acacaagcattagcatgtccatga 207744
>gb|AC125380.4| Mus musculus BAC clone RP23-204N23 from 1, complete sequence Length = 214005 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tacataaacaaagcacactg 159 |||||||||||||||||||| Sbjct: 31022 tacataaacaaagcacactg 31003
>dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT18E13, TM0283, complete sequence Length = 112721 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tgagaaaggctttacttgta 217 |||||||||||||||||||| Sbjct: 91431 tgagaaaggctttacttgta 91412 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,643,845 Number of Sequences: 3902068 Number of extensions: 3643845 Number of successful extensions: 67574 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67457 Number of HSP's gapped (non-prelim): 117 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
