Clone Information

BLAST Search Result

Clone Name	rbasd17d06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY588275.1\| Zea mays putative inosine-uridine preferring nucl...	50	0.008
2	ref\|XM_483754.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.13
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
4	dbj\|AP003928.3\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
5	dbj\|AK065324.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
6	emb\|X07277.1\|GGNCAD Chicken mRNA for N-cadherin	44	0.49
7	gb\|AC012365.6\| Homo sapiens BAC clone RP11-459C22 from 2, comple...	44	0.49
8	gb\|AC175466.2\| Gallus gallus BAC clone CH261-8A20 from chromosom...	44	0.49
9	ref\|NM_001001615.1\| Gallus gallus cadherin 2, type 1, N-cadherin...	44	0.49
10	gb\|AC123946.4\| Mus musculus BAC clone RP23-97L17 from chromosome...	42	2.0
11	gb\|AC091660.2\| Bos taurus clone RP42-354B6, complete sequence	42	2.0
12	gb\|AC164615.3\| Mus musculus BAC clone RP23-320N6 from chromosome...	42	2.0
13	gb\|AC090505.10\| Homo sapiens 3 BAC RP11-152D21 (Roswell Park Can...	42	2.0
14	gb\|AC079762.7\| Homo sapiens BAC clone RP11-150F12 from 2, comple...	42	2.0
15	gb\|AC079248.5\| Homo sapiens BAC clone RP11-24J11 from 2, complet...	42	2.0
16	gb\|AY109712.1\| Zea mays CL31621_2 mRNA sequence	42	2.0
17	emb\|AL808017.4\| Mouse DNA sequence from clone RP23-145G21 on chr...	42	2.0
18	emb\|AJ225719.1\|HSJ225719 Homo sapiens DNA for Ig heavy chain var...	42	2.0
19	gb\|AC137117.15\| Mus musculus chromosome 15, clone RP23-242E20, c...	40	7.7
20	gb\|CP000111.1\| Prochlorococcus marinus str. MIT 9312, complete g...	40	7.7
21	ref\|XM_640143.1\| Dictyostelium discoideum hypothetical protein (...	40	7.7
22	gb\|AC095018.2\| Drosophila melanogaster clone BACR24L18, complete...	40	7.7
23	ref\|XM_426559.1\| PREDICTED: Gallus gallus similar to transmembra...	40	7.7
24	gb\|AC183274.3\| Pan troglodytes BAC clone CH251-156F5 from chromo...	40	7.7
25	gb\|AC116963.2\| Dictyostelium discoideum chromosome 2 map 4657875...	40	7.7
26	gb\|AC134906.3\| Mus musculus BAC clone RP23-361K7 from chromosome...	40	7.7
27	gb\|AC121940.3\| Mus musculus BAC clone RP24-209B21 from chromosom...	40	7.7
28	gb\|AC142351.1\| Pan troglodytes BAC clone RP43-21J15 from 7, comp...	40	7.7
29	emb\|AL359257.9\| Human DNA sequence from clone RP11-226E21 on chr...	40	7.7
30	emb\|AL356583.28\| Human DNA sequence from clone RP11-690C23 on ch...	40	7.7
31	emb\|X56979.1\|CECLB2G C. elegans clb-2 gene for alpha1(IV) collagen	40	7.7
32	gb\|CP000083.1\| Colwellia psychrerythraea 34H, complete genome	40	7.7
33	emb\|BX510945.13\| Zebrafish DNA sequence from clone CH211-59D17 i...	40	7.7
34	gb\|AC036111.7\| Homo sapiens chromosome 2, clone RP11-738O11, com...	40	7.7
35	gb\|AC103949.6\| Homo sapiens chromosome 18, clone RP11-671P2, com...	40	7.7
36	emb\|BX510315.6\| Zebrafish DNA sequence from clone CH211-59I18 in...	40	7.7
37	gb\|AC026839.7\| Homo sapiens chromosome 5, clone RP11-186B13, com...	40	7.7
38	gb\|AC011586.9\| Homo sapiens, clone RP11-13N12, complete sequence	40	7.7
39	gb\|AF083031.2\|AF083031 Guillardia theta nucleomorph chromosome 3...	40	7.7
40	gb\|AC148298.3\| Pan troglodytes BAC clone CH251-136E8 from chromo...	40	7.7
41	gb\|AC048341.22\| Homo sapiens 12 BAC RP11-631N16 (Roswell Park Ca...	40	7.7
42	gb\|AC091636.1\|AC091636 Drosophila melanogaster, chromosome 3R, r...	40	7.7
43	gb\|AC007771.7\|AC007771 Drosophila melanogaster, chromosome 3R, r...	40	7.7
44	gb\|AC009501.4\| Homo sapiens BAC clone RP11-511I11 from 2, comple...	40	7.7
45	gb\|BC094158.1\| Xenopus laevis cDNA clone MGC:115288 IMAGE:686110...	40	7.7
46	gb\|AC137600.2\| Homo sapiens chromosome 5 clone RP11-1147D2, comp...	40	7.7
47	gb\|AC087749.12\| Homo sapiens chromosome 17, clone RP11-474I11, c...	40	7.7
48	gb\|AC022077.20\| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Canc...	40	7.7
49	emb\|BX510368.7\| Zebrafish DNA sequence from clone DKEY-190P19 in...	40	7.7
50	emb\|AJ323734.1\|HSA323734 Homo sapiens genomic sequence surroundi...	40	7.7
51	emb\|AL954739.9\| Zebrafish DNA sequence from clone CH211-192K9 in...	40	7.7
52	emb\|AL772314.9\| Zebrafish DNA sequence from clone DKEY-89B17 in ...	40	7.7
53	gb\|AE003731.3\| Drosophila melanogaster chromosome 3R, section 69...	40	7.7
54	gb\|AE003715.4\| Drosophila melanogaster chromosome 3R, section 53...	40	7.7
55	gb\|AC148246.3\| Saimiri boliviensis boliviensis clone CH254-471K1...	40	7.7
56	emb\|Z27078.4\|CEK04H4 Caenorhabditis elegans Cosmid K04H4, comple...	40	7.7
57	emb\|AL929382.9\| Mouse DNA sequence from clone RP23-136C24 on chr...	40	7.7
58	gb\|U31961.1\|DMU31961 Drosophila melanogaster bithorax complex (B...	40	7.7
59	gb\|L07835.1\|DROABDB Drosophila melanogaster (clone DS07696) Abd-...	40	7.7

>gb|AY588275.1| Zea mays putative inosine-uridine preferring nucleoside hydrolase
            mRNA, complete cds
          Length = 1458

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 489  ctcagggtgccatcagcagcttctttacatatgcaaggacctttggcacattgactgtcc 548
            |||| |||||||| ||||||||||||| | |    | ||||||||||||||  || ||||
Sbjct: 1147 ctcatggtgccatgagcagcttctttataaagctgatgacctttggcacatcaaccgtcc 1088

                         
Query: 549  atgcaactgaaat 561
            |||||||||||||
Sbjct: 1087 atgcaactgaaat 1075

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>ref|XM_483754.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1516

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 530  tttggcacattgactgtccatgcaactgaaattgg 564
            ||||||||||  ||||||||||||||||| |||||
Sbjct: 1071 tttggcacatcaactgtccatgcaactgagattgg 1037

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 530      tttggcacattgactgtccatgcaactgaaattgg 564
                ||||||||||  ||||||||||||||||| |||||
Sbjct: 27916050 tttggcacatcaactgtccatgcaactgagattgg 27916084

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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1150_A11
          Length = 142010

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 530    tttggcacattgactgtccatgcaactgaaattgg 564
              ||||||||||  ||||||||||||||||| |||||
Sbjct: 124128 tttggcacatcaactgtccatgcaactgagattgg 124162

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>dbj|AK065324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P23, full
            insert sequence
          Length = 1517

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 530  tttggcacattgactgtccatgcaactgaaattgg 564
            ||||||||||  ||||||||||||||||| |||||
Sbjct: 1072 tttggcacatcaactgtccatgcaactgagattgg 1038

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>emb|X07277.1|GGNCAD Chicken mRNA for N-cadherin
          Length = 3203

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 401 aaaacagaaaaatatactttgg 422
           ||||||||||||||||||||||
Sbjct: 243 aaaacagaaaaatatactttgg 264

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>gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, complete sequence
          Length = 187848

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 278    atgtagttgtatatataaatgt 299
              ||||||||||||||||||||||
Sbjct: 117162 atgtagttgtatatataaatgt 117183

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>gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosome ul, complete sequence
          Length = 233533

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 401    aaaacagaaaaatatactttgg 422
              ||||||||||||||||||||||
Sbjct: 175808 aaaacagaaaaatatactttgg 175787

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>ref|NM_001001615.1| Gallus gallus cadherin 2, type 1, N-cadherin (neuronal) (CDH2),
           mRNA
          Length = 3203

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 401 aaaacagaaaaatatactttgg 422
           ||||||||||||||||||||||
Sbjct: 243 aaaacagaaaaatatactttgg 264

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>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence
          Length = 193610

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 261    ttttttccaaatttgaaatgt 281
              |||||||||||||||||||||
Sbjct: 149918 ttttttccaaatttgaaatgt 149898

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>gb|AC091660.2| Bos taurus clone RP42-354B6, complete sequence
          Length = 173068

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 262    tttttccaaatttgaaatgta 282
              |||||||||||||||||||||
Sbjct: 136262 tttttccaaatttgaaatgta 136242

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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence
          Length = 201524

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   ttttttccaaatttgaaatgt 281
             |||||||||||||||||||||
Sbjct: 45112 ttttttccaaatttgaaatgt 45092

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>gb|AC090505.10| Homo sapiens 3 BAC RP11-152D21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86560

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 263   ttttccaaatttgaaatgtag 283
             |||||||||||||||||||||
Sbjct: 80762 ttttccaaatttgaaatgtag 80742

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>gb|AC079762.7| Homo sapiens BAC clone RP11-150F12 from 2, complete sequence
          Length = 163408

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 391    cttgcttctaaaaacagaaaa 411
              |||||||||||||||||||||
Sbjct: 137100 cttgcttctaaaaacagaaaa 137120

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>gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence
          Length = 128535

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 187   tcttttctcatttgtctaaacatgt 211
             ||||||||| |||||||||||||||
Sbjct: 25554 tcttttctcctttgtctaaacatgt 25530

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>gb|AY109712.1| Zea mays CL31621_2 mRNA sequence
          Length = 877

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                       
Query: 489 ctcagggtgccatcagcagcttctttacatatgcaaggacctttggcacattgactgtcc 548
           |||| |||||||| ||||||||||||| | |    | |||||||| |||||  || ||||
Sbjct: 313 ctcatggtgccataagcagcttctttataaagctgatgacctttgccacatcaaccgtcc 372

                        
Query: 549 atgcaactgaaat 561
           |||||||||||||
Sbjct: 373 atgcaactgaaat 385

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>emb|AL808017.4| Mouse DNA sequence from clone RP23-145G21 on chromosome X, complete
              sequence
          Length = 183291

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 311    gctgtcacaatgctgtctgtc 331
              |||||||||||||||||||||
Sbjct: 145223 gctgtcacaatgctgtctgtc 145243

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>emb|AJ225719.1|HSJ225719 Homo sapiens DNA for Ig heavy chain variable region, isolate cell
           G2 22
          Length = 232

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 51  ccagaaacagttccaagaaaa 71
           |||||||||||||||||||||
Sbjct: 83  ccagaaacagttccaagaaaa 103

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>gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, complete sequence
          Length = 202147

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   aaaacagaaaaatatacttt 420
             ||||||||||||||||||||
Sbjct: 80023 aaaacagaaaaatatacttt 80004

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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    tgcagaatttacccccattg 354
              ||||||||||||||||||||
Sbjct: 449776 tgcagaatttacccccattg 449757

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>ref|XM_640143.1| Dictyostelium discoideum hypothetical protein (DDB0216999), partial
            mRNA
          Length = 7347

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  taaatgtttggaatcaatgc 312
            ||||||||||||||||||||
Sbjct: 6980 taaatgtttggaatcaatgc 6999

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>gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete sequence
          Length = 163116

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   aaaaacagaaaaatatactt 419
             ||||||||||||||||||||
Sbjct: 12756 aaaaacagaaaaatatactt 12775

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>ref|XM_426559.1| PREDICTED: Gallus gallus similar to transmembrane protein with
            EGF-like and two follistatin-like domains 2 (LOC429002),
            mRNA
          Length = 4818

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 317  acaatgctgtctgtcatgtgcaga 340
            |||||||| |||||||||||||||
Sbjct: 3904 acaatgctatctgtcatgtgcaga 3927

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>gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromosome 7, complete
              sequence
          Length = 163934

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    tttgaaatgtagttgtatat 291
              ||||||||||||||||||||
Sbjct: 157798 tttgaaatgtagttgtatat 157779

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>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4,
             complete sequence
          Length = 257109

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   taaatgtttggaatcaatgc 312
             ||||||||||||||||||||
Sbjct: 38997 taaatgtttggaatcaatgc 39016

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>gb|AC134906.3| Mus musculus BAC clone RP23-361K7 from chromosome 19, complete sequence
          Length = 192484

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   tctgtcatgtgcagaattta 345
             ||||||||||||||||||||
Sbjct: 24277 tctgtcatgtgcagaattta 24258

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>gb|AC121940.3| Mus musculus BAC clone RP24-209B21 from chromosome 19, complete sequence
          Length = 203390

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    tctgtcatgtgcagaattta 345
              ||||||||||||||||||||
Sbjct: 113091 tctgtcatgtgcagaattta 113072

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>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence
          Length = 159635

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 393   tgcttctaaaaacagaaaaatata 416
             |||||||||||||||||| |||||
Sbjct: 14073 tgcttctaaaaacagaaatatata 14096

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>emb|AL359257.9| Human DNA sequence from clone RP11-226E21 on chromosome 13 Contains
             part of a novel gene (KIAA0916)amd two novel genes,
             complete sequence
          Length = 97477

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   ttgtatatataaatgtttgg 303
             ||||||||||||||||||||
Sbjct: 75204 ttgtatatataaatgtttgg 75185

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>emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on chromosome 1 Contains the 5'
              end of the SMYD3 gene for SET and MYND domain containing 3,
              an ubiquitin specific protease 6 (Tre-2 oncogene) (USP6)
              pseudogene, a novel gene, a pseudogene similar to part of
              tumor necrosis factor receptor superfamily member 13B
              (TNFRSF13B), a pseudogene similar to part of
              carboxypeptidase D (CPD), the TFB2M gene for mitochondrial
              transcription factor B2, the 5' end of the gene for a novel
              protein (FLJ32001, DKFZp451A152, DKFZp451B077, FLJ00215)
              and two CpG islands, complete sequence
          Length = 207486

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    ttttccaaatttgaaatgta 282
              ||||||||||||||||||||
Sbjct: 178110 ttttccaaatttgaaatgta 178129

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>emb|X56979.1|CECLB2G C. elegans clb-2 gene for alpha1(IV) collagen
          Length = 7238

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 64  caagaaaagggcctaaaatgtgca 87
           |||||||||| |||||||||||||
Sbjct: 234 caagaaaaggccctaaaatgtgca 257

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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 387     tatgcttgcttctaaaaaca 406
               ||||||||||||||||||||
Sbjct: 1777862 tatgcttgcttctaaaaaca 1777843

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>emb|BX510945.13| Zebrafish DNA sequence from clone CH211-59D17 in linkage group 21,
             complete sequence
          Length = 202152

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tatatataaatgtttggaat 306
             ||||||||||||||||||||
Sbjct: 84106 tatatataaatgtttggaat 84125

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>gb|AC036111.7| Homo sapiens chromosome 2, clone RP11-738O11, complete sequence
          Length = 184570

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    aatttgaaatgtagttgtat 289
              ||||||||||||||||||||
Sbjct: 150391 aatttgaaatgtagttgtat 150372

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>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence
          Length = 177301

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 393   tgcttctaaaaacagaaaaatata 416
             |||||||||||||||||| |||||
Sbjct: 27244 tgcttctaaaaacagaaatatata 27267

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>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24,
              complete sequence
          Length = 202562

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    tcacaatgctgtctgtcatg 334
              ||||||||||||||||||||
Sbjct: 121065 tcacaatgctgtctgtcatg 121084

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>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence
          Length = 156721

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 393    tgcttctaaaaacagaaaaatata 416
              |||||||||||||||||| |||||
Sbjct: 115300 tgcttctaaaaacagaaatatata 115277

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>gb|AC011586.9| Homo sapiens, clone RP11-13N12, complete sequence
          Length = 167475

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    cttctaaaaacagaaaaata 414
              ||||||||||||||||||||
Sbjct: 138966 cttctaaaaacagaaaaata 138947

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>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   ttctaaaaacagaaaaatat 415
             ||||||||||||||||||||
Sbjct: 35042 ttctaaaaacagaaaaatat 35061

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>gb|AC148298.3| Pan troglodytes BAC clone CH251-136E8 from chromosome 7, complete
              sequence
          Length = 168496

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    tttgaaatgtagttgtatat 291
              ||||||||||||||||||||
Sbjct: 109278 tttgaaatgtagttgtatat 109297

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>gb|AC048341.22| Homo sapiens 12 BAC RP11-631N16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 67400

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  aaaacagaaaaatatacttt 420
            ||||||||||||||||||||
Sbjct: 7910 aaaacagaaaaatatacttt 7891

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>gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone
             BACR03M20, complete sequence
          Length = 175335

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   aaaaacagaaaaatatactt 419
             ||||||||||||||||||||
Sbjct: 49729 aaaaacagaaaaatatactt 49710

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>gb|AC007771.7|AC007771 Drosophila melanogaster, chromosome 3R, region 92E-92F, BAC clone
              BACR26M03, complete sequence
          Length = 197071

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tgtatatataaatgtttgga 304
              ||||||||||||||||||||
Sbjct: 107803 tgtatatataaatgtttgga 107822

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>gb|AC009501.4| Homo sapiens BAC clone RP11-511I11 from 2, complete sequence
          Length = 157173

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 380    ttcctcctatgcttgcttctaaaa 403
              |||||||||||||| |||||||||
Sbjct: 151564 ttcctcctatgctttcttctaaaa 151587

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>gb|BC094158.1| Xenopus laevis cDNA clone MGC:115288 IMAGE:6861103, complete cds
          Length = 4580

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 487  ttctcagggtgccatcagca 506
            ||||||||||||||||||||
Sbjct: 2650 ttctcagggtgccatcagca 2669

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>gb|AC137600.2| Homo sapiens chromosome 5 clone RP11-1147D2, complete sequence
          Length = 88884

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 15   aatatncaaaaaatgtgtggcaa 37
            ||||| |||||||||||||||||
Sbjct: 8044 aatattcaaaaaatgtgtggcaa 8022

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>gb|AC087749.12| Homo sapiens chromosome 17, clone RP11-474I11, complete sequence
          Length = 216161

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    ttcccccagaaacagttcca 65
             ||||||||||||||||||||
Sbjct: 90681 ttcccccagaaacagttcca 90700

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>gb|AC022077.20| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158176

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   ttacatatgcaaggaccttt 532
             ||||||||||||||||||||
Sbjct: 97439 ttacatatgcaaggaccttt 97420

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>emb|BX510368.7| Zebrafish DNA sequence from clone DKEY-190P19 in linkage group 20,
             complete sequence
          Length = 84687

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   aaatgtagttgtatatataaatgt 299
             |||||||||||||||| |||||||
Sbjct: 79248 aaatgtagttgtatatttaaatgt 79225

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>emb|AJ323734.1|HSA323734 Homo sapiens genomic sequence surrounding NotI site, clone JNB-030C
          Length = 915

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  cctttcccccagaaacagtt 62
           ||||||||||||||||||||
Sbjct: 591 cctttcccccagaaacagtt 572

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>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20,
             complete sequence
          Length = 154604

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 276   aaatgtagttgtatatataaatgt 299
             |||||||||||||||| |||||||
Sbjct: 66333 aaatgtagttgtatatttaaatgt 66356

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>emb|AL772314.9| Zebrafish DNA sequence from clone DKEY-89B17 in linkage group 19,
             complete sequence
          Length = 185640

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ggaagttttttccaaatttg 275
             ||||||||||||||||||||
Sbjct: 98670 ggaagttttttccaaatttg 98689

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>gb|AE003731.3| Drosophila melanogaster chromosome 3R, section 69 of 118 of the complete
              sequence
          Length = 230001

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tgtatatataaatgtttgga 304
              ||||||||||||||||||||
Sbjct: 174018 tgtatatataaatgtttgga 174037

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>gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53 of 118 of the complete
              sequence
          Length = 228547

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    aaaaacagaaaaatatactt 419
              ||||||||||||||||||||
Sbjct: 144938 aaaaacagaaaaatatactt 144919

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>gb|AC148246.3| Saimiri boliviensis boliviensis clone CH254-471K13, complete sequence
          Length = 177755

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 393   tgcttctaaaaacagaaaaatata 416
             ||||||||||||| ||||||||||
Sbjct: 95895 tgcttctaaaaacggaaaaatata 95918

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>emb|Z27078.4|CEK04H4 Caenorhabditis elegans Cosmid K04H4, complete sequence
          Length = 33929

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 64   caagaaaagggcctaaaatgtgca 87
            |||||||||| |||||||||||||
Sbjct: 8215 caagaaaaggccctaaaatgtgca 8192

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>emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chromosome X, complete
             sequence
          Length = 201060

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   ttgcttctaaaaacagaaaa 411
             ||||||||||||||||||||
Sbjct: 35139 ttgcttctaaaaacagaaaa 35158

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>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence
          Length = 338234

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   aaaaacagaaaaatatactt 419
             ||||||||||||||||||||
Sbjct: 38780 aaaaacagaaaaatatactt 38799

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>gb|L07835.1|DROABDB Drosophila melanogaster (clone DS07696) Abd-B gene
          Length = 80423

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   aaaaacagaaaaatatactt 419
             ||||||||||||||||||||
Sbjct: 38780 aaaaacagaaaaatatactt 38799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,440,074
Number of Sequences: 3902068
Number of extensions: 6440074
Number of successful extensions: 133886
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133701
Number of HSP's gapped (non-prelim): 185
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result