ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475495.1| Oryza sativa (japonica cultivar-group), predic... 270 5e-69
2dbj|AK065975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
3gb|AY104790.1| Zea mays PCO093811 mRNA sequence 200 4e-48
4gb|BT016764.1| Zea mays clone Contig597 mRNA sequence 192 1e-45
5gb|AY108468.1| Zea mays PCO093809 mRNA sequence 192 1e-45
6emb|AJ001304.1|CPHYPOTHE Citrus paradisi mRNA for hypothetical p... 117 5e-23
7gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome... 113 8e-22
8gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome... 113 8e-22
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
10gb|BT014019.1| Lycopersicon esculentum clone 133081F, mRNA sequence 94 7e-16
11ref|NM_113623.2| Arabidopsis thaliana unknown protein AT3G27090 ... 90 1e-14
12gb|AY103299.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, com... 90 1e-14
13gb|AY058843.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, com... 90 1e-14
14gb|AY087011.1| Arabidopsis thaliana clone 3049 mRNA, complete se... 90 1e-14
15dbj|AB026649.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 90 1e-14
16gb|DQ228317.1| Solanum tuberosum clone 130A10 unknown mRNA 74 7e-10
17gb|BT014232.1| Lycopersicon esculentum clone 133431R, mRNA sequence 74 7e-10
18emb|AJ491856.1|PSA491856 Pisum sativum mRNA for GDA2 protein (gd... 70 1e-08
19emb|X72385.1|DCB2P D.carota mRNA for B2 protein 62 2e-06
20emb|AJ875407.1| Glycine max mRNA for N-rich protein (nrp gene) 60 1e-05
21gb|BT014106.1| Lycopersicon esculentum clone 133210F, mRNA sequence 54 6e-04
22gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
23gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
25gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
26gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
27gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
28dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
29dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
30gb|AC140935.1| Gallus gallus BAC clone TAM31-90L17 from chromoso... 42 2.3
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.1
32gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, com... 40 9.1
33gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosom... 40 9.1
34gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complet... 40 9.1
35emb|BX901912.10| Zebrafish DNA sequence from clone CH211-212D2 i... 40 9.1
36emb|AL365229.13| Human DNA sequence from clone RP11-723K16 on ch... 40 9.1
37gb|AF523525.1| Gavia immer clone TUMWGi6.1.8 microsatellite sequ... 40 9.1
38gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Can... 40 9.1
39gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.1
40emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, ... 40 9.1
41emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, ... 40 9.1
42dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
44gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, c... 40 9.1
45gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.1
46dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
47emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 i... 40 9.1
48emb|AJ421479.1| Mus musculus X-inactivation center region; segme... 40 9.1
49emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chr... 40 9.1 
>ref|XM_475495.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 945

 Score =  270 bits (136), Expect = 5e-69
 Identities = 233/264 (88%), Gaps = 1/264 (0%)
 Strand = Plus / Minus

                                                                       
Query: 402 caaaggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggacca 461
           ||||||||||||||||| |  ||||| ||||||||||||||||| || || || ||||||
Sbjct: 926 caaaggtctagcagtgataaggtctcagctatggagagctcaagacgaaactttggacca 867

                                                                       
Query: 462 tcatagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttcta 521
           || || |||||||||||||| || ||||||||||||||||| | |||||| ||| |||||
Sbjct: 866 tcgtaatggtgcagcactggtctgaaagcatcctcttccaaaggcttgcagagctttcta 807

                                                                       
Query: 522 atgcggattctcacctgtgctgggaatctggattcgcctttgcactttttatcttcccag 581
           |||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| 
Sbjct: 806 atgcggatcctcacctgcgctgggaatctagattcacctttacacttcttatcttcccat 747

                                                                       
Query: 582 gcggtgggatcaatgtttgatcctccaaaactagcagcctcaaacaccccatggagttga 641
           || ||||||||||| || |||||||||||||||| ||||||||| |||||||| || |||
Sbjct: 746 gcagtgggatcaatattagatcctccaaaactagaagcctcaaataccccatgaagctga 687

                                   
Query: 642 tggggtcgtgtagttatagaggaa 665
           | ||||||||||||||||||||||
Sbjct: 686 t-gggtcgtgtagttatagaggaa 664
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>dbj|AK065975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045D18, full
            insert sequence
          Length = 1546

 Score =  254 bits (128), Expect = 3e-64
 Identities = 231/264 (87%), Gaps = 1/264 (0%)
 Strand = Plus / Minus

                                                                        
Query: 402  caaaggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggacca 461
            ||||||||||||||||| |  | ||| ||||||||||||||||| || || || ||||||
Sbjct: 1170 caaaggtctagcagtgataaggcctcagctatggagagctcaagacgaaactttggacca 1111

                                                                        
Query: 462  tcatagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttcta 521
            || || |||||||||||||| || ||||||||||||||||| | |||||| ||| |||||
Sbjct: 1110 tcgtaatggtgcagcactggtctgaaagcatcctcttccaaaggcttgcagagctttcta 1051

                                                                        
Query: 522  atgcggattctcacctgtgctgggaatctggattcgcctttgcactttttatcttcccag 581
            |||||||| |||||||| ||||||||||| ||||| ||||| ||||  ||||||||||| 
Sbjct: 1050 atgcggatcctcacctgcgctgggaatctagattcacctttacactccttatcttcccat 991

                                                                        
Query: 582  gcggtgggatcaatgtttgatcctccaaaactagcagcctcaaacaccccatggagttga 641
            || ||||||||||| || |||||||||||||||| ||||||||| |||||||| || |||
Sbjct: 990  gcagtgggatcaatattagatcctccaaaactagaagcctcaaataccccatgaagctga 931

                                    
Query: 642  tggggtcgtgtagttatagaggaa 665
            | ||||||||||||||||||||||
Sbjct: 930  t-gggtcgtgtagttatagaggaa 908
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>gb|AY104790.1| Zea mays PCO093811 mRNA sequence
          Length = 1604

 Score =  200 bits (101), Expect = 4e-48
 Identities = 222/261 (85%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                        
Query: 405  aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 464
            |||||||||||||||| |||||| || |||||||||||||||||||| || || ||||||
Sbjct: 1061 aggtctagcagtgacaatgtctccgcgatggagagctcaaggcggaactttggcccatca 1002

                                                                        
Query: 465  tagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttctaatg 524
            || |||||||  |||||||| || | |||||||||||| | |||||||||| | ||||||
Sbjct: 1001 taatggtgcaaaactggcctgaaggaatcctcttccaacggcttgcacagcttcctaatg 942

                                                                        
Query: 525  cggattctcacctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcg 584
            | ||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 941  cagatcctcacctgcgctgggaatctagattcacctttacacttcttatcctcccatgca 882

                                                                        
Query: 585  gtgggatcaatgtttgatcctccaaaactagcagcctcaaacaccccatggagttgatgg 644
            || ||||| || || || || |||||||| ||||||||||| |||||||| || || | |
Sbjct: 881  gtaggatcgatattggacccaccaaaactggcagcctcaaataccccatgaagctggt-g 823

                                 
Query: 645  ggtcgtgtagttatagaggaa 665
            ||| |||||||||||||||||
Sbjct: 822  ggttgtgtagttatagaggaa 802
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>gb|BT016764.1| Zea mays clone Contig597 mRNA sequence
          Length = 1573

 Score =  192 bits (97), Expect = 1e-45
 Identities = 221/261 (84%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                        
Query: 405  aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 464
            ||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||
Sbjct: 1067 aggtctagcagggacagggtctccgcgatggagagctcgaggcgaaactttgggccatca 1008

                                                                        
Query: 465  tagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttctaatg 524
            ||||||||||  |||||||| || | |||||||||||| | |||||||||| | |||| |
Sbjct: 1007 tagtggtgcaaaactggcctgaaggaatcctcttccaacggcttgcacagcttcctaacg 948

                                                                        
Query: 525  cggattctcacctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcg 584
            ||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 947  cggatcctcacctgcgctgggaatctagattcacctttacacttcttatcctcccatgca 888

                                                                        
Query: 585  gtgggatcaatgtttgatcctccaaaactagcagcctcaaacaccccatggagttgatgg 644
            ||||||||||| || || || |||||||| ||||||||||| |||||||| || || | |
Sbjct: 887  gtgggatcaatattagacccaccaaaactggcagcctcaaataccccatgaagctggt-g 829

                                 
Query: 645  ggtcgtgtagttatagaggaa 665
             || |||||||||||||||||
Sbjct: 828  agtggtgtagttatagaggaa 808
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>gb|AY108468.1| Zea mays PCO093809 mRNA sequence
          Length = 1259

 Score =  192 bits (97), Expect = 1e-45
 Identities = 221/261 (84%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                       
Query: 405 aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 464
           ||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||
Sbjct: 697 aggtctagcagggacagggtctccgcgatggagagctcgaggcgaaactttgggccatca 638

                                                                       
Query: 465 tagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttctaatg 524
           ||||||||||  |||||||| || | |||||||||||| | |||||||||| | |||| |
Sbjct: 637 tagtggtgcaaaactggcctgaaggaatcctcttccaacggcttgcacagcttcctaacg 578

                                                                       
Query: 525 cggattctcacctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcg 584
           ||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 577 cggatcctcacctgcgctgggaatctagattcacctttacacttcttatcctcccatgca 518

                                                                       
Query: 585 gtgggatcaatgtttgatcctccaaaactagcagcctcaaacaccccatggagttgatgg 644
           ||||||||||| || || || |||||||| ||||||||||| |||||||| || || | |
Sbjct: 517 gtgggatcaatattagacccaccaaaactggcagcctcaaataccccatgaagctggt-g 459

                                
Query: 645 ggtcgtgtagttatagaggaa 665
            || |||||||||||||||||
Sbjct: 458 agtggtgtagttatagaggaa 438
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>emb|AJ001304.1|CPHYPOTHE Citrus paradisi mRNA for hypothetical protein
          Length = 1320

 Score =  117 bits (59), Expect = 5e-23
 Identities = 158/191 (82%)
 Strand = Plus / Minus

                                                                       
Query: 435 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 494
           ||||||||||| || |||||||||||||| ||||| ||||  || |||||||||||||| 
Sbjct: 930 gagagctcaagacgaaatttaggaccatcgtagtgatgcaagacaggcctaaaagcatct 871

                                                                       
Query: 495 tcttccaaggccttgcacagccttctaatgcggattctcacctgtgctgggaatctggat 554
           |||||||| |||||||||||  |||| |  ||||| || ||||| || || || || |||
Sbjct: 870 tcttccaatgccttgcacagttttcttacccggatccttacctgagcaggaaaccttgat 811

                                                                       
Query: 555 tcgcctttgcactttttatcttcccaggcggtgggatcaatgtttgatcctccaaaacta 614
           || ||||| |||||||| || |||||||| || || |||||||| || |||||||||| |
Sbjct: 810 tcccctttacactttttgtcctcccaggctgttgggtcaatgttggagcctccaaaacca 751

                      
Query: 615 gcagcctcaaa 625
           |  ||||||||
Sbjct: 750 gttgcctcaaa 740
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>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02,
             complete sequence
          Length = 99795

 Score =  113 bits (57), Expect = 8e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 429   gctatggagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaa 488
             ||||||||||||||||| || || || |||||||| || |||||||||||||| || |||
Sbjct: 10469 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactggtctgaaa 10528

                                                              
Query: 489   gcatcctcttccaaggccttgcacagccttctaatgcggattctcacct 537
             |||||||||||||| | |||||| ||| ||||||||||||| |||||||
Sbjct: 10529 gcatcctcttccaaaggcttgcagagctttctaatgcggatcctcacct 10577



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                         
Query: 534   acctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcggtgggatca 593
             ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||||
Sbjct: 10657 acctgcgctgggaatctagattcacctttacacttcttatcttcccatgcagtgggatca 10716

                                         
Query: 594   atgtttgatcctccaaaactagcagcct 621
             || || |||||||||||||||| |||||
Sbjct: 10717 atattagatcctccaaaactagaagcct 10744



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                            
Query: 619   cctcaaacaccccatggagttgatggggtcgtgtagttatagaggaa 665
             ||||||| |||||||| || ||||||| |||||||||||||||||||
Sbjct: 11420 cctcaaataccccatgaagctgatggg-tcgtgtagttatagaggaa 11465
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>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04,
             complete sequence
          Length = 122599

 Score =  113 bits (57), Expect = 8e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 429   gctatggagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaa 488
             ||||||||||||||||| || || || |||||||| || |||||||||||||| || |||
Sbjct: 93586 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactggtctgaaa 93645

                                                              
Query: 489   gcatcctcttccaaggccttgcacagccttctaatgcggattctcacct 537
             |||||||||||||| | |||||| ||| ||||||||||||| |||||||
Sbjct: 93646 gcatcctcttccaaaggcttgcagagctttctaatgcggatcctcacct 93694



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                         
Query: 534   acctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcggtgggatca 593
             ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||||
Sbjct: 93774 acctgcgctgggaatctagattcacctttacacttcttatcttcccatgcagtgggatca 93833

                                         
Query: 594   atgtttgatcctccaaaactagcagcct 621
             || || |||||||||||||||| |||||
Sbjct: 93834 atattagatcctccaaaactagaagcct 93861



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                            
Query: 619   cctcaaacaccccatggagttgatggggtcgtgtagttatagaggaa 665
             ||||||| |||||||| || ||||||| |||||||||||||||||||
Sbjct: 94537 cctcaaataccccatgaagctgatggg-tcgtgtagttatagaggaa 94582
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  113 bits (57), Expect = 8e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 429      gctatggagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaa 488
                ||||||||||||||||| || || || |||||||| || |||||||||||||| || |||
Sbjct: 24407796 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactggtctgaaa 24407855

                                                                 
Query: 489      gcatcctcttccaaggccttgcacagccttctaatgcggattctcacct 537
                |||||||||||||| | |||||| ||| ||||||||||||| |||||||
Sbjct: 24407856 gcatcctcttccaaaggcttgcagagctttctaatgcggatcctcacct 24407904



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                            
Query: 534      acctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcggtgggatca 593
                ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||||
Sbjct: 24407984 acctgcgctgggaatctagattcacctttacacttcttatcttcccatgcagtgggatca 24408043

                                            
Query: 594      atgtttgatcctccaaaactagcagcct 621
                || || |||||||||||||||| |||||
Sbjct: 24408044 atattagatcctccaaaactagaagcct 24408071



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                               
Query: 619      cctcaaacaccccatggagttgatggggtcgtgtagttatagaggaa 665
                ||||||| |||||||| || ||||||| |||||||||||||||||||
Sbjct: 24408747 cctcaaataccccatgaagctgatggg-tcgtgtagttatagaggaa 24408792



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 437      gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 496
                |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 29364808 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 29364867

                     
Query: 497      ttcca 501
                 ||||
Sbjct: 29364868 ctcca 29364872
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>gb|BT014019.1| Lycopersicon esculentum clone 133081F, mRNA sequence
          Length = 1322

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 146/179 (81%)
 Strand = Plus / Minus

                                                                       
Query: 435 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 494
           ||||||||||| || ||||| || ||||||||||| ||||||||||| ||||||||||| 
Sbjct: 978 gagagctcaagacgaaatttgggtccatcatagtgatgcagcactggtctaaaagcatct 919

                                                                       
Query: 495 tcttccaaggccttgcacagccttctaatgcggattctcacctgtgctgggaatctggat 554
           || ||||| ||| | |  ||  | || || |||||  ||||||| || ||||| || || 
Sbjct: 918 tcctccaaagccctaccaagtttcctgatacggatcttcacctgagcagggaacctcgac 859

                                                                      
Query: 555 tcgcctttgcactttttatcttcccaggcggtgggatcaatgtttgatcctccaaaact 613
           || ||||| ||||| ||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 858 tctcctttacacttcttatcttcccaagcagttggatcaatgttagaacctccaaaact 800
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>ref|NM_113623.2| Arabidopsis thaliana unknown protein AT3G27090 mRNA, complete cds
          Length = 1437

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 435 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 494
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 963 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 904

                            
Query: 495 tcttccaaggccttgca 511
           ||||||||||| |||||
Sbjct: 903 tcttccaaggctttgca 887
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>gb|AY103299.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, complete cds
          Length = 891

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 435 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 494
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 836 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 777

                            
Query: 495 tcttccaaggccttgca 511
           ||||||||||| |||||
Sbjct: 776 tcttccaaggctttgca 760
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>gb|AY058843.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, complete cds
          Length = 1437

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 435 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 494
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 962 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 903

                            
Query: 495 tcttccaaggccttgca 511
           ||||||||||| |||||
Sbjct: 902 tcttccaaggctttgca 886
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>gb|AY087011.1| Arabidopsis thaliana clone 3049 mRNA, complete sequence
          Length = 1426

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 435 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 494
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 956 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 897

                            
Query: 495 tcttccaaggccttgca 511
           ||||||||||| |||||
Sbjct: 896 tcttccaaggctttgca 880
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>dbj|AB026649.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOJ10
          Length = 73686

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 435   gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 494
             |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 57861 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 57802

                              
Query: 495   tcttccaaggccttgca 511
             ||||||||||| |||||
Sbjct: 57801 tcttccaaggctttgca 57785
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>gb|DQ228317.1| Solanum tuberosum clone 130A10 unknown mRNA
          Length = 1288

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 525 cggattctcacctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcg 584
           ||||| |||||||| || ||||| || || || ||||| ||||||||||| |||||||| 
Sbjct: 792 cggatcctcacctgagcagggaaccttgactctcctttacactttttatcctcccaggca 733

                                        
Query: 585 gtgggatcaatgtttgatcctccaaaact 613
           || ||||||||||| || |||||||||||
Sbjct: 732 gttggatcaatgttggaacctccaaaact 704
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>gb|BT014232.1| Lycopersicon esculentum clone 133431R, mRNA sequence
          Length = 1422

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 525 cggattctcacctgtgctgggaatctggattcgcctttgcactttttatcttcccaggcg 584
           ||||| |||||||| || ||||| || || || ||||| ||||||||||| |||||||| 
Sbjct: 906 cggatcctcacctgagcagggaaccttgactctcctttacactttttatcctcccaggca 847

                                        
Query: 585 gtgggatcaatgtttgatcctccaaaact 613
           || ||||||||||| || |||||||||||
Sbjct: 846 gttggatcaatgttggaacctccaaaact 818
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>emb|AJ491856.1|PSA491856 Pisum sativum mRNA for GDA2 protein (gda2 gene)
          Length = 1119

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 140/175 (80%)
 Strand = Plus / Minus

                                                                       
Query: 438 agctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctct 497
           ||||||||||| || || ||||||||||| || ||||  |||||||| || | ||| |||
Sbjct: 611 agctcaaggcgaaactttggaccatcataatgatgcaaaactggcctgaatgaatcttct 552

                                                                       
Query: 498 tccaaggccttgcacagccttctaatgcggattctcacctgtgctgggaatctggattcg 557
           ||||  |||||||| |   |||| |  || ||||| ||||| |||||||| || || |||
Sbjct: 551 tccagtgccttgcaaatttttctgacacgaattcttacctgagctgggaaccttgactcg 492

                                                                  
Query: 558 cctttgcactttttatcttcccaggcggtgggatcaatgtttgatcctccaaaac 612
           |||||||| |||||||| ||||| || || ||||| ||||| || || |||||||
Sbjct: 491 cctttgcattttttatcctcccatgcagttggatctatgttagaacccccaaaac 437
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>emb|X72385.1|DCB2P D.carota mRNA for B2 protein
          Length = 935

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 576 tcccaggcggtgggatcaatgtttgatcctccaaaactagcagcctcaaacaccccatg 634
           ||||| || |||||||||||||||| ||||||||| || ||||||||||| || |||||
Sbjct: 454 tcccaagcagtgggatcaatgtttgttcctccaaagcttgcagcctcaaaaacaccatg 396



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 437 gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 496
           |||||| |||||||| ||||||||||| |||||||| || | |||||| || | ||||||
Sbjct: 593 gagctccaggcggaacttaggaccatcgtagtggtggagaattggcctgaatgaatcctc 534

              
Query: 497 ttc 499
           |||
Sbjct: 533 ttc 531
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>emb|AJ875407.1| Glycine max mRNA for N-rich protein (nrp gene)
          Length = 1450

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                       
Query: 563 gcactttttatcttcccaggcggtgggatcaatgtttgatcctccaaaactagcagcctc 622
           |||||| || || ||||| || || |||||||| || |||||||||||||| ||||||||
Sbjct: 961 gcacttcttgtcctcccaagccgttggatcaatattggatcctccaaaacttgcagcctc 902

                             
Query: 623 aaacaccccatggagttg 640
           ||| |  |||||||||||
Sbjct: 901 aaagataccatggagttg 884
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>gb|BT014106.1| Lycopersicon esculentum clone 133210F, mRNA sequence
          Length = 1420

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 438  agctcaaggcggaatttaggaccatcatagtggtgcagcactggcct 484
            |||||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct: 1166 agctcaaggcggaatttagggccatcgtaatggtgaaggactggcct 1120
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 600     gatcctccaaaactagcagcct 621
               ||||||||||||||||||||||
Sbjct: 1656022 gatcctccaaaactagcagcct 1656001
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>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0020E23, complete sequence
          Length = 151359

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 600   gatcctccaaaactagcagcct 621
             ||||||||||||||||||||||
Sbjct: 53119 gatcctccaaaactagcagcct 53098
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 600     gatcctccaaaactagcagcct 621
               ||||||||||||||||||||||
Sbjct: 1656022 gatcctccaaaactagcagcct 1656001
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 600     gatcctccaaaactagcagcct 621
               ||||||||||||||||||||||
Sbjct: 1655973 gatcctccaaaactagcagcct 1655952
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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                         
Query: 437   gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 496
             |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 12833 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 12892

                  
Query: 497   ttcca 501
              ||||
Sbjct: 12893 ctcca 12897
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>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03,
             complete sequence
          Length = 45160

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 437   gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 496
             |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 28457 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 28398

                  
Query: 497   ttcca 501
              ||||
Sbjct: 28397 ctcca 28393
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>dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F10, full
            insert sequence
          Length = 1306

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 437  gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 496
            |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 1009 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 950

                 
Query: 497  ttcca 501
             ||||
Sbjct: 949  ctcca 945
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>dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G03, full
           insert sequence
          Length = 1187

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 496
           |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 889 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 830

                
Query: 497 ttcca 501
            ||||
Sbjct: 829 ctcca 825
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>gb|AC140935.1| Gallus gallus BAC clone TAM31-90L17 from chromosome ul, complete
             sequence
          Length = 72054

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 344   aagaaccacagagcaaccaca 364
             |||||||||||||||||||||
Sbjct: 11917 aagaaccacagagcaaccaca 11897
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 600      gatcctccaaaactagcagc 619
                ||||||||||||||||||||
Sbjct: 13732324 gatcctccaaaactagcagc 13732305
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>gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, complete sequence
          Length = 204704

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 498   tccaaggccttgcacagccttcta 521
             |||||||||||||| |||||||||
Sbjct: 17481 tccaaggccttgcaaagccttcta 17458
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>gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosome 15, complete sequence
          Length = 168423

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 498    tccaaggccttgcacagccttcta 521
              |||||||||||||| |||||||||
Sbjct: 121901 tccaaggccttgcaaagccttcta 121924
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>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence
          Length = 117853

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   caaaggtctagcagtgacag 421
             ||||||||||||||||||||
Sbjct: 32397 caaaggtctagcagtgacag 32378
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>emb|BX901912.10| Zebrafish DNA sequence from clone CH211-212D2 in linkage group 1,
             complete sequence
          Length = 140289

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   agaacagaacattgtgaaaacatc 311
             |||||| |||||||||||||||||
Sbjct: 99308 agaacataacattgtgaaaacatc 99331
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>emb|AL365229.13| Human DNA sequence from clone RP11-723K16 on chromosome 20 Contains the
             5' end of the CDH4 gene for retinal cadherin 4 type 1
             (R-cadherin), complete sequence
          Length = 121478

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   ggacagaacagaacattgtg 303
             ||||||||||||||||||||
Sbjct: 41536 ggacagaacagaacattgtg 41555
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>gb|AF523525.1| Gavia immer clone TUMWGi6.1.8 microsatellite sequence
          Length = 479

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 agagacaggctcacatctta 202
           ||||||||||||||||||||
Sbjct: 219 agagacaggctcacatctta 238
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>gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75001

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aaatacataaataaggagaa 141
             ||||||||||||||||||||
Sbjct: 15221 aaatacataaataaggagaa 15202
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>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 600  gatcctccaaaactagcagc 619
            ||||||||||||||||||||
Sbjct: 8852 gatcctccaaaactagcagc 8833
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>emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, complete sequence
          Length = 202570

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ggcaccaacacagagacagg 191
              ||||||||||||||||||||
Sbjct: 123380 ggcaccaacacagagacagg 123361
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>emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, complete sequence
          Length = 172752

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ggcaccaacacagagacagg 191
              ||||||||||||||||||||
Sbjct: 163530 ggcaccaacacagagacagg 163511
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 369     tgttccgaagcagattaggc 388
               ||||||||||||||||||||
Sbjct: 4376314 tgttccgaagcagattaggc 4376333
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 600      gatcctccaaaactagcagc 619
                ||||||||||||||||||||
Sbjct: 13727299 gatcctccaaaactagcagc 13727280
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>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence
          Length = 184139

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   acaggctcacatcttagagg 206
             ||||||||||||||||||||
Sbjct: 98897 acaggctcacatcttagagg 98916
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>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 600    gatcctccaaaactagcagc 619
              ||||||||||||||||||||
Sbjct: 122996 gatcctccaaaactagcagc 122977
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>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1506_G02
          Length = 106742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   tgttccgaagcagattaggc 388
             ||||||||||||||||||||
Sbjct: 16163 tgttccgaagcagattaggc 16182
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>emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 in linkage group 1,
             complete sequence
          Length = 196036

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   agaacagaacattgtgaaaacatc 311
             |||||| |||||||||||||||||
Sbjct: 44840 agaacataacattgtgaaaacatc 44863
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>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3
          Length = 252150

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     tcatgatgcatcacaacagt 66
              ||||||||||||||||||||
Sbjct: 247239 tcatgatgcatcacaacagt 247220
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>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete
             sequence
          Length = 229724

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    tcatgatgcatcacaacagt 66
             ||||||||||||||||||||
Sbjct: 35009 tcatgatgcatcacaacagt 35028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,772,306
Number of Sequences: 3902068
Number of extensions: 5772306
Number of successful extensions: 110772
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110469
Number of HSP's gapped (non-prelim): 298
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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