ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16o04 |
|---|---|
| Clone Library Name | barley_pub |
>PCY1B_HUMAN (Q9Y5K3) Choline-phosphate cytidylyltransferase B (EC 2.7.7.15)| (Phosphorylcholine transferase B) (CTP:phosphocholine cytidylyltransferase B) (CT B) (CCT B) (CCT-beta) Length = 369 Score = 81.6 bits (200), Expect = 2e-15 Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Frame = -1 Query: 688 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 T+RT+GISTSDII RIV+DY+ Y RNL RGY+ +L VS++ EKR R + +++KV Sbjct: 194 TQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKV 253 Query: 508 KQHQEKVGEKWSTVAK----LQEEWVENADRWVVGFLEKFEEGCHSMGTAIKERIQER 347 K +E+ E + V + L ++W E + ++ FLE F A K+ QER Sbjct: 254 KNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELF-----GPDGAWKQMFQER 306
>PCY1B_RAT (Q9QZC4) Choline-phosphate cytidylyltransferase B (EC 2.7.7.15)| (Phosphorylcholine transferase B) (CTP:phosphocholine cytidylyltransferase B) (CT B) (CCT B) (CCT-beta) Length = 369 Score = 80.5 bits (197), Expect = 4e-15 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Frame = -1 Query: 688 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 T+RT+GISTSDII RIV+DY+ Y RNL RGY+ +L VS++ EK+ R + +++KV Sbjct: 194 TQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKV 253 Query: 508 KQHQEKVGEKWSTVAK----LQEEWVENADRWVVGFLEKFEEGCHSMGTAIKERIQER 347 K +E+ E + V + L ++W E + ++ FLE F A K+ QER Sbjct: 254 KNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELF-----GPDGAWKQMFQER 306
>PCY1A_HUMAN (P49585) Choline-phosphate cytidylyltransferase A (EC 2.7.7.15)| (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) Length = 367 Score = 79.7 bits (195), Expect = 8e-15 Identities = 42/100 (42%), Positives = 63/100 (63%), Gaps = 4/100 (4%) Frame = -1 Query: 688 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 T+RT+GISTSDII RIV+DY+ Y RNL RGY+ +L VS++ EK+ + + +++KV Sbjct: 194 TQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKEKV 253 Query: 508 KQHQEKVGEKWSTVAK----LQEEWVENADRWVVGFLEKF 401 K +EK E V + L ++W E + ++ FLE F Sbjct: 254 KDVEEKSKEFVQKVEEKSIDLIQKWEEKSREFIGSFLEMF 293
>PCY1A_RAT (P19836) Choline-phosphate cytidylyltransferase A (EC 2.7.7.15)| (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) Length = 367 Score = 78.6 bits (192), Expect = 2e-14 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 4/100 (4%) Frame = -1 Query: 688 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 T+RT+GISTSDII RIV+DY+ Y RNL RGY+ +L VS++ EK+ + + ++ KV Sbjct: 194 TQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKV 253 Query: 508 KQHQEKVGEKWSTVAK----LQEEWVENADRWVVGFLEKF 401 K +EK E V + L ++W E + ++ FLE F Sbjct: 254 KDVEEKSKEFVQKVEEKSIDLIQKWEEKSREFIGSFLEMF 293
>PCY1A_MOUSE (P49586) Choline-phosphate cytidylyltransferase A (EC 2.7.7.15)| (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) Length = 367 Score = 78.6 bits (192), Expect = 2e-14 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 4/100 (4%) Frame = -1 Query: 688 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 T+RT+GISTSDII RIV+DY+ Y RNL RGY+ +L VS++ EK+ + + ++ KV Sbjct: 194 TQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKV 253 Query: 508 KQHQEKVGEKWSTVAK----LQEEWVENADRWVVGFLEKF 401 K +EK E V + L ++W E + ++ FLE F Sbjct: 254 KDVEEKSKEFVQKVEEKSIDLIQKWEEKSREFIGSFLEMF 293
>PCY1A_CRIGR (P49584) Choline-phosphate cytidylyltransferase A (EC 2.7.7.15)| (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) Length = 367 Score = 77.8 bits (190), Expect = 3e-14 Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 4/100 (4%) Frame = -1 Query: 688 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 T+RT+GISTSDII RIV+DY+ Y RNL RGY+ +L VS++ EK+ + + ++ KV Sbjct: 194 TQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKV 253 Query: 508 KQHQEKVGEKWSTVAK----LQEEWVENADRWVVGFLEKF 401 K +EK E V + L + W E + ++ FLE F Sbjct: 254 KDVEEKSKEFVQKVEERSIDLIQTWEEKSREFIGSFLEMF 293
>PCY1_CAEEL (P49583) Putative choline-phosphate cytidylyltransferase (EC| 2.7.7.15) (Phosphorylcholine transferase) (CTP:phosphocholine cytidylyltransferase) (CT) (CCT) Length = 362 Score = 66.2 bits (160), Expect = 9e-11 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 2/111 (1%) Frame = -1 Query: 691 ETKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDK 512 ET+RT+G+STSD++ RI++DY++YV RNL RGYS +L V ++ + ++ Sbjct: 197 ETERTEGVSTSDVVCRIIRDYDKYVRRNLQRGYSPKELNVGFLAASKYQI---------- 246 Query: 511 VKQHQEKVGEKWSTVAKLQEEWVENADRWVVGFLEKFEE--GCHSMGTAIK 365 Q KV S +L W +D + F++ F + G ++ G +K Sbjct: 247 ----QNKVDSLKSKGIELLSTWKSKSDDIIRDFIDTFHKDGGLNAFGGRLK 293
>PCY1_YEAST (P13259) Choline-phosphate cytidylyltransferase (EC 2.7.7.15)| (Phosphorylcholine transferase) (CTP:phosphocholine cytidylyltransferase) (CT) (CCT) Length = 424 Score = 65.9 bits (159), Expect = 1e-10 Identities = 29/64 (45%), Positives = 46/64 (71%) Frame = -1 Query: 688 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 T+RT+G+STSDII +I++DY++Y+MRN ARG +R +L VS++K+ L + R Sbjct: 221 TQRTNGVSTSDIITKIIRDYDKYLMRNFARGATRQELNVSWLKKNELEFKKHINEFRSYF 280 Query: 508 KQHQ 497 K++Q Sbjct: 281 KKNQ 284
>PCY1_PLAFK (P49587) Choline-phosphate cytidylyltransferase (EC 2.7.7.15)| (Phosphorylcholine transferase) (CTP:phosphocholine cytidylyltransferase) (CT) (CCT) Length = 370 Score = 57.4 bits (137), Expect = 4e-08 Identities = 26/69 (37%), Positives = 44/69 (63%) Frame = -1 Query: 694 KETKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRD 515 K T+RT+G+ST+D+I+RI+K+Y +Y+ R+L RG N+L + K + +++ L + Sbjct: 225 KATQRTEGVSTTDLIVRILKNYEDYIERSLQRGIHPNELNIGVTKAQSIKMKKNLIRWGE 284 Query: 514 KVKQHQEKV 488 KV KV Sbjct: 285 KVTDELTKV 293
>LAML1_CAEEL (Q18823) Laminin-like protein C54D1.5 precursor| Length = 1535 Score = 32.0 bits (71), Expect = 1.8 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -3 Query: 506 AAPRKSGGEVEYSGKTPGRVG*KCRSLGCWFSREIRGRLPFNG----NCHQGKNPGKAEG 339 AA K +E+ PG VG C S F RE + PFN +CH N +AE Sbjct: 675 AANPKQATWIEHCECLPGFVGQFCESCESGFRRETKFGGPFNHCIKCDCHNHSNSCEAES 734 Query: 338 GA 333 G+ Sbjct: 735 GS 736
>SMC5_SCHPO (O13710) Structural maintenance of chromosome 5 (DNA repair protein| spr18) (SMC partner of rad18) Length = 1065 Score = 31.6 bits (70), Expect = 2.4 Identities = 18/72 (25%), Positives = 33/72 (45%) Frame = -1 Query: 571 SYVKEKRLRVNMGLKTLRDKVKQHQEKVGEKWSTVAKLQEEWVENADRWVVGFLEKFEEG 392 SYV E+ ++ L K+ + V E + ++E+WV + V ++F +G Sbjct: 853 SYVMEQYDARKKEIEELESKMSDFDQSVEELQDEMNSIKEDWVSKLEENVQCISDRFSKG 912 Query: 391 CHSMGTAIKERI 356 MG A + R+ Sbjct: 913 MSGMGYAGEVRL 924
>BRE5_YEAST (P53741) UBP3-associated protein BRE5| Length = 515 Score = 31.2 bits (69), Expect = 3.1 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = -1 Query: 664 TSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKVK 506 T+DII I + YV+ + + S + VS V+E ++R G++ ++K K Sbjct: 134 TNDIIRFISNSFKPYVLTDASLSQSNEENSVSAVEEDKIRHESGVEKEKEKEK 186
>PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog (TAT-binding| protein homolog 1) (TBP-1) Length = 419 Score = 30.4 bits (67), Expect = 5.3 Identities = 10/29 (34%), Positives = 23/29 (79%) Frame = -1 Query: 574 VSYVKEKRLRVNMGLKTLRDKVKQHQEKV 488 + +KE+ R N+ L+++++K+K++QEK+ Sbjct: 31 IRILKEESQRTNLDLESVKEKIKENQEKI 59
>DHR1_YEAST (Q04217) Probable ATP-dependent RNA helicase DHR1 (EC 3.6.1.-)| (DEAH box RNA helicase DHR1) (Extracellular matrix protein 16) Length = 1267 Score = 30.0 bits (66), Expect = 6.9 Identities = 20/86 (23%), Positives = 43/86 (50%) Frame = -1 Query: 691 ETKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDK 512 E+ T+ + ++I+ + ++ + R L ++ + VS +K+KRL DK Sbjct: 50 ESSTTEPNANAEILEPLTEEEKKMKKRKLQELFTPKESKVSRLKKKRL----------DK 99 Query: 511 VKQHQEKVGEKWSTVAKLQEEWVENA 434 +HQ K E+ + + KLQ+ ++ + Sbjct: 100 FIEHQLKREERKTIIGKLQDYKIDTS 125
>NF60_LOLPE (Q01240) 60 kDa neurofilament protein (NF60)| Length = 511 Score = 30.0 bits (66), Expect = 6.9 Identities = 21/82 (25%), Positives = 39/82 (47%) Frame = -1 Query: 577 GVSYVKEKRLRVNMGLKTLRDKVKQHQEKVGEKWSTVAKLQEEWVENADRWVVGFLEKFE 398 GV++VK R R ++ L ++ + EKV ++E ++ + G LE+ + Sbjct: 85 GVNHVKANREREKQDMRDLNERFANYIEKV------------RFLEAQNKKLAGELEELK 132 Query: 397 EGCHSMGTAIKERIQERLKEAQ 332 +AIKE + L+EA+ Sbjct: 133 SKWGKETSAIKEMYETELEEAR 154
>NF70_LOLPE (Q01241) 70 kDa neurofilament protein (NF70)| Length = 615 Score = 30.0 bits (66), Expect = 6.9 Identities = 21/82 (25%), Positives = 39/82 (47%) Frame = -1 Query: 577 GVSYVKEKRLRVNMGLKTLRDKVKQHQEKVGEKWSTVAKLQEEWVENADRWVVGFLEKFE 398 GV++VK R R ++ L ++ + EKV ++E ++ + G LE+ + Sbjct: 85 GVNHVKANREREKQDMRDLNERFANYIEKV------------RFLEAQNKKLAGELEELK 132 Query: 397 EGCHSMGTAIKERIQERLKEAQ 332 +AIKE + L+EA+ Sbjct: 133 SKWGKETSAIKEMYETELEEAR 154
>BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain protein 1B| (Williams-Beuren syndrome chromosome region 9 protein homolog) (WBRS9) Length = 1479 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = -1 Query: 529 KTLRDKVKQHQEKVGEKWSTVAKLQEEWVENADRWVVGFLEKFEEGCHSMGTAIKERIQE 350 KT R + + ++ E+ + + + E +E+ RW E+ +E +KER++E Sbjct: 502 KTARLLSNEDRARLPEELRALVQKRYELLEHKKRWASMSEEQRKEYLKKKRQELKERLRE 561 Query: 349 RLKEAQSRD 323 + KE + R+ Sbjct: 562 KAKERRERE 570
>YSXE_BACSU (P37964) Hypothetical protein ysxE (ORF2)| Length = 341 Score = 29.6 bits (65), Expect = 9.1 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = -1 Query: 547 RVNMGLKTLRDKVKQHQEKVGEKWSTVAKLQEEWVENADR-WVVGFLE-----KFEEGCH 386 R LK RD+++++ + +KW E++V+ A++ W + E F E Sbjct: 116 RTAQELKVRRDEIERYYGQTKKKWEQDKIFYEQFVDRAEKEWYLSPFELQAITYFSETIS 175 Query: 385 SMGTAIKERIQERLKEAQSRDFS 317 ++ A+ ER+++ + A+ +D S Sbjct: 176 AVNFAL-ERLEDWYESAKEKDVS 197
>HFA1_YEAST (P32874) Protein HFA1| Length = 2273 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Frame = -1 Query: 634 DYNEYVMRNLARGYSRNDLGVSYVKEKRL-------RVNMGLKTLRDKVKQHQEKVGEKW 476 D ++ R L +G RN+L + K +R R+N G R + K K K+ Sbjct: 2141 DLHDRSTRMLVKGVIRNEL--EWKKSRRFLYWRLRRRLNEGQVIKRLQKKTCDNKTKMKY 2198 Query: 475 STVAKLQEEWVE----NADRWVVGFLEK 404 + K+ + W N DR VV F+E+ Sbjct: 2199 DDLLKIVQSWYNDLDVNDDRAVVEFIER 2226
>ZCHC8_CHICK (Q5F3D1) Zinc finger CCHC domain-containing protein 8| Length = 613 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 403 ISLENQQPSDLHFQPTLPGVLPLYSTSPPLFLGAASL 513 +S +Q + FQP LP P+ ST PPL G L Sbjct: 346 VSQRSQTTNSFQFQPPLPPGPPVISTPPPLPQGTPPL 382
>SYC_MOUSE (Q9ER72) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 831 Score = 29.6 bits (65), Expect = 9.1 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 10/119 (8%) Frame = -1 Query: 658 DIIMRIVKDYNEY----------VMRNLARGYSRNDLGVSYVKEKRLRVNMGLKTLRDKV 509 DI+ R+++DY +Y + + R +N L Y +E++ LK +RD + Sbjct: 158 DILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQY-REQKPPATQLLKDVRDAM 216 Query: 508 KQHQEKVGEKWSTVAKLQEEWVENADRWVVGFLEKFEEGCHSMGTAIKERIQERLKEAQ 332 K K+ E + E ++N+ + LE+ S G + ++Q L+EA+ Sbjct: 217 KPFSVKLSETTDPDKRQMLERIQNSVKLATEPLEQAVRSSLS-GEEVDSKVQVLLEEAK 274
>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding| protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1) Length = 423 Score = 29.6 bits (65), Expect = 9.1 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = -1 Query: 583 DLGVSYVKEKRLRVNMGLKTLRDKVKQHQEKV 488 D + +KE+ R N+ L + ++K+K++QEK+ Sbjct: 32 DNEIRIIKEELQRTNLELDSFKEKIKENQEKI 63
>MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)| Length = 539 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/83 (26%), Positives = 40/83 (48%) Frame = -1 Query: 562 KEKRLRVNMGLKTLRDKVKQHQEKVGEKWSTVAKLQEEWVENADRWVVGFLEKFEEGCHS 383 KEK+ +V LK RDK+ + + ++ E V K ++ + LE +EG S Sbjct: 253 KEKK-KVESDLKDNRDKLSETETRLKETQDLVTKREKS---------ISDLENAKEGLES 302 Query: 382 MGTAIKERIQERLKEAQSRDFSL 314 + ++ +IQE L + + + L Sbjct: 303 QISQLQRKIQELLAKIEELEEEL 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,037,695 Number of Sequences: 219361 Number of extensions: 1537300 Number of successful extensions: 4490 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4484 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
