Clone Name | rbasd16o03 |
---|---|
Clone Library Name | barley_pub |
>TRME_ANASP (Q8YN91) tRNA modification GTPase trmE| Length = 459 Score = 36.6 bits (83), Expect = 0.059 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = -1 Query: 534 KPGVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421 K GVERS A AD+V++TI + GWT D ++ ++V Sbjct: 288 KIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV 325
>TRME_SYNY3 (P73839) Probable tRNA modification GTPase trmE| Length = 456 Score = 35.8 bits (81), Expect = 0.10 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -1 Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421 GVERS A AD+V++T+ + GWTE D + ++V Sbjct: 290 GVERSRKAAQQADLVLLTVDAHQGWTEADQLIYEQV 325
>TRME_SYNP7 (Q8KPU2) tRNA modification GTPase trmE| Length = 462 Score = 33.1 bits (74), Expect = 0.65 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -1 Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421 GVERS A AD+V++TI + GW+ +D + + V Sbjct: 292 GVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAV 327
>TRME_SYNEL (Q9X9T0) Probable tRNA modification GTPase trmE| Length = 469 Score = 33.1 bits (74), Expect = 0.65 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -1 Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRVMI 415 GV+RS AL AD++++ I + GWT D + ++ + Sbjct: 291 GVQRSRQAALSADLILLVIDASQGWTAADQAIYDQLQL 328
>TRME_GLOVI (Q7NHT3) tRNA modification GTPase trmE| Length = 453 Score = 32.7 bits (73), Expect = 0.85 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421 G+ERS A AD+V++ I +GWT D+ + +V Sbjct: 287 GIERSHAAAREADLVLLVIDRTEGWTCADSDIFAQV 322
>TRME_SYNPX (Q7U3V6) tRNA modification GTPase trmE| Length = 450 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421 G+ RSE AD+V++ + GWT +D L+ R+ Sbjct: 290 GIARSEEALATADVVLLVLDGHAGWTAEDAALLARI 325
>TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger protein 23)| Length = 488 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Frame = +3 Query: 150 HPAKWVQFHCLFFGYPTRLVEIVLCHCICCSKVK-------SVENDRGPA*FERHHFPMQ 308 H A V+ CL G+ +++ V C KVK S+E ++ + F R +F ++ Sbjct: 242 HLAAEVEGKCLQSGF--EMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSHFPRQYFALR 299 Query: 309 NLLNMLLKQKACKPSTRQPDII 374 +L L+ P T P+++ Sbjct: 300 KILKQLIADVTLDPETAHPNLV 321
>TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger protein 23)| (Testis-abundant finger protein) Length = 488 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Frame = +3 Query: 150 HPAKWVQFHCLFFGYPTRLVEIVLCHCICCSKVK-------SVENDRGPA*FERHHFPMQ 308 H A V+ CL G+ +++ V C KVK S+E ++ + F R +F ++ Sbjct: 242 HLAAEVEGKCLQSGF--EMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNFPRQYFALR 299 Query: 309 NLLNMLLKQKACKPSTRQPDII 374 +L L+ P T P+++ Sbjct: 300 KILKQLIADVTLDPETAHPNLV 321
>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor| Length = 995 Score = 29.3 bits (64), Expect = 9.4 Identities = 22/76 (28%), Positives = 39/76 (51%) Frame = +2 Query: 299 SNAEFVEYVAQTEGMQTINQATGHHQQNC*ENETDGTLSIMTRLISLVSSSVHPSTDFIV 478 SN+ V+ + G +I+ + + + + T S + S VSSSV PS+ +V Sbjct: 34 SNSSSTSVVSSSSGSVSISSSIAETSSSATDILSSITQSASST--SGVSSSVGPSSSSVV 91 Query: 479 TITISAPSAGVSDRST 526 + ++S S+ VSD S+ Sbjct: 92 SSSVSQSSSSVSDVSS 107
>TRME_PROMM (Q7V491) tRNA modification GTPase trmE| Length = 470 Score = 29.3 bits (64), Expect = 9.4 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -1 Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRVMID 412 G++RS AD+ ++ GWT DD L+ ++ D Sbjct: 296 GIDRSHQALAAADVAVLVFDLSLGWTADDAALLAQIPDD 334 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,251,182 Number of Sequences: 219361 Number of extensions: 1626880 Number of successful extensions: 4103 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3971 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4103 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)