>TRME_ANASP (Q8YN91) tRNA modification GTPase trmE|
          Length = 459

 Score = 36.6 bits (83), Expect = 0.059
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -1

Query: 534 KPGVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421
           K GVERS   A  AD+V++TI +  GWT  D ++ ++V
Sbjct: 288 KIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV 325

>TRME_SYNY3 (P73839) Probable tRNA modification GTPase trmE|
          Length = 456

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -1

Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421
           GVERS   A  AD+V++T+ +  GWTE D  + ++V
Sbjct: 290 GVERSRKAAQQADLVLLTVDAHQGWTEADQLIYEQV 325

>TRME_SYNP7 (Q8KPU2) tRNA modification GTPase trmE|
          Length = 462

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421
           GVERS   A  AD+V++TI +  GW+ +D  + + V
Sbjct: 292 GVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAV 327

>TRME_SYNEL (Q9X9T0) Probable tRNA modification GTPase trmE|
          Length = 469

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRVMI 415
           GV+RS   AL AD++++ I +  GWT  D  +  ++ +
Sbjct: 291 GVQRSRQAALSADLILLVIDASQGWTAADQAIYDQLQL 328

>TRME_GLOVI (Q7NHT3) tRNA modification GTPase trmE|
          Length = 453

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421
           G+ERS   A  AD+V++ I   +GWT  D+ +  +V
Sbjct: 287 GIERSHAAAREADLVLLVIDRTEGWTCADSDIFAQV 322

>TRME_SYNPX (Q7U3V6) tRNA modification GTPase trmE|
          Length = 450

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRV 421
           G+ RSE     AD+V++ +    GWT +D  L+ R+
Sbjct: 290 GIARSEEALATADVVLLVLDGHAGWTAEDAALLARI 325

>TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger protein 23)|
          Length = 488

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +3

Query: 150 HPAKWVQFHCLFFGYPTRLVEIVLCHCICCSKVK-------SVENDRGPA*FERHHFPMQ 308
           H A  V+  CL  G+   +++ V      C KVK       S+E ++  + F R +F ++
Sbjct: 242 HLAAEVEGKCLQSGF--EMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSHFPRQYFALR 299

Query: 309 NLLNMLLKQKACKPSTRQPDII 374
            +L  L+      P T  P+++
Sbjct: 300 KILKQLIADVTLDPETAHPNLV 321

>TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger protein 23)|
           (Testis-abundant finger protein)
          Length = 488

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +3

Query: 150 HPAKWVQFHCLFFGYPTRLVEIVLCHCICCSKVK-------SVENDRGPA*FERHHFPMQ 308
           H A  V+  CL  G+   +++ V      C KVK       S+E ++  + F R +F ++
Sbjct: 242 HLAAEVEGKCLQSGF--EMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNFPRQYFALR 299

Query: 309 NLLNMLLKQKACKPSTRQPDII 374
            +L  L+      P T  P+++
Sbjct: 300 KILKQLIADVTLDPETAHPNLV 321

>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor|
          Length = 995

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +2

Query: 299 SNAEFVEYVAQTEGMQTINQATGHHQQNC*ENETDGTLSIMTRLISLVSSSVHPSTDFIV 478
           SN+     V+ + G  +I+ +      +  +  +  T S  +   S VSSSV PS+  +V
Sbjct: 34  SNSSSTSVVSSSSGSVSISSSIAETSSSATDILSSITQSASST--SGVSSSVGPSSSSVV 91

Query: 479 TITISAPSAGVSDRST 526
           + ++S  S+ VSD S+
Sbjct: 92  SSSVSQSSSSVSDVSS 107

>TRME_PROMM (Q7V491) tRNA modification GTPase trmE|
          Length = 470

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 528 GVERSETPALGADMVIVTIKSVDGWTEDDTKLIKRVMID 412
           G++RS      AD+ ++      GWT DD  L+ ++  D
Sbjct: 296 GIDRSHQALAAADVAVLVFDLSLGWTADDAALLAQIPDD 334


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,251,182
Number of Sequences: 219361
Number of extensions: 1626880
Number of successful extensions: 4103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4103
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)