ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 4e-91
2dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 4e-91
3ref|XM_475871.1| Oryza sativa (japonica cultivar-group), predic... 339 6e-90
4dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
5gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 94 6e-16
6gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome... 94 6e-16
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
8ref|NM_111809.3| Arabidopsis thaliana SYP71 (SYNTAXIN OF PLANTS ... 76 1e-10
9gb|AY090358.1| Arabidopsis thaliana AT3g09740/F11F8_33 mRNA, com... 76 1e-10
10gb|BT024483.1| Arabidopsis thaliana At3g09740 mRNA, complete cds 76 1e-10
11gb|AF355757.1|AF355757 Arabidopsis thaliana syntaxin of plants 7... 76 1e-10
12gb|AY107058.1| Zea mays PCO100771 mRNA sequence 62 2e-06
13emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, B... 58 4e-05
14ref|NM_114397.1| Arabidopsis thaliana SYP72 (SYNTAXIN OF PLANTS ... 54 5e-04
15gb|DQ446736.1| Arabidopsis thaliana clone pENTR221-At3g45280 syn... 54 5e-04
16gb|AF355758.1|AF355758 Arabidopsis thaliana syntaxin of plants 7... 54 5e-04
17emb|BX822780.1|CNS0A64U Arabidopsis thaliana Full-length cDNA Co... 52 0.002
18ref|NM_116010.1| Arabidopsis thaliana SYP73 (SYNTAXIN OF PLANTS ... 46 0.13
19emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BA... 46 0.13
20gb|AF355759.1|AF355759 Arabidopsis thaliana syntaxin of plants 7... 46 0.13
21gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete s... 44 0.53
22emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chro... 44 0.53
23gb|AE004331.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 2.1
24gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11... 42 2.1
25gb|AC134338.1| Homo sapiens BAC clone RP11-713A18 from 2, comple... 42 2.1
26dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 42 2.1
27gb|AY366441.1| Lemur catta microsatellite Lc5 sequence 42 2.1
28ref|NM_101867.1| Arabidopsis thaliana hydrolase, acting on ester... 40 8.2
29ref|XM_638730.1| Dictyostelium discoideum hypothetical protein (... 40 8.2
30gb|AE014075.1| Escherichia coli CFT073, complete genome 40 8.2
31gb|CP000243.1| Escherichia coli UTI89, complete genome 40 8.2
32emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, ... 40 8.2
33gb|AC116633.4| Homo sapiens BAC clone RP11-452C8 from 4, complet... 40 8.2
34gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, com... 40 8.2
35gb|AC084834.4| Homo sapiens chromosome 8, clone RP11-107M13, com... 40 8.2
36emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 ... 40 8.2
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
38gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175... 40 8.2
39gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thali... 40 8.2
40dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
41emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in ... 40 8.2
42emb|AJ412756.1|AED412756 Allium eduardii 5.8S rRNA gene, interna... 40 8.2
43emb|AJ411959.1|AED411959 Allium eduardii 5.8S ribosomal RNA, int... 40 8.2 
>dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N20, full
           insert sequence
          Length = 1227

 Score =  343 bits (173), Expect = 4e-91
 Identities = 300/341 (87%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 262 ctcacttcttgagcacattgtaaaggtaggcagcgataccaagtatgacacagagcagga 321
           ||||||| || || ||||||||||| || || || |||||||| || |||||||||||||
Sbjct: 928 ctcacttttttagaacattgtaaagataagccgcaataccaagaataacacagagcagga 869

                                                                       
Query: 322 caatgtcgatgcagaagttgcgactggatctcatctgaagaatagtctgtttcagtctca 381
           | || || ||||||||||||||||| ||||||| ||||||||  |||| ||| ||||| |
Sbjct: 868 cgatatcaatgcagaagttgcgactagatctcagctgaagaacggtctcttttagtctga 809

                                                                       
Query: 382 cgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatca 441
           ||||||| ||||||| |||||  ||||||| ||||||||| || ||||||||||||||||
Sbjct: 808 cgttggtattcttcaaatctgtgttggctctatccaccttctcgtccatttcatccatca 749

                                                                       
Query: 442 agggaacttgcctatccaattcctcgttcatatccgatgccatgttctttcagagttgcc 501
           |||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| ||
Sbjct: 748 agggaacttgcctatccagttcctcattcatatcagatgccatgtt-tttcagagtttcc 690

                                                                       
Query: 502 agcccttcaccaataacatccaaaccttcatcctgcttcattctacgcatctcatattcc 561
           ||||||||||| |||| |||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 689 agcccttcaccgataatatccaaaccttcatcctgtttcattttgcgcatctcatattcc 630

                                                    
Query: 562 tgacgaaacttgtttgattcttcagtccccttaaagtactc 602
            |||||||||  ||||||||||| || ||||||||||||||
Sbjct: 629 cgacgaaactgatttgattcttctgttcccttaaagtactc 589
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>dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M14, full
           insert sequence
          Length = 1236

 Score =  343 bits (173), Expect = 4e-91
 Identities = 300/341 (87%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 262 ctcacttcttgagcacattgtaaaggtaggcagcgataccaagtatgacacagagcagga 321
           ||||||| || || ||||||||||| || || || |||||||| || |||||||||||||
Sbjct: 937 ctcacttttttagaacattgtaaagataagccgcaataccaagaataacacagagcagga 878

                                                                       
Query: 322 caatgtcgatgcagaagttgcgactggatctcatctgaagaatagtctgtttcagtctca 381
           | || || ||||||||||||||||| ||||||| ||||||||  |||| ||| ||||| |
Sbjct: 877 cgatatcaatgcagaagttgcgactagatctcagctgaagaacggtctcttttagtctga 818

                                                                       
Query: 382 cgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatca 441
           ||||||| ||||||| |||||  ||||||| ||||||||| || ||||||||||||||||
Sbjct: 817 cgttggtattcttcaaatctgtgttggctctatccaccttctcgtccatttcatccatca 758

                                                                       
Query: 442 agggaacttgcctatccaattcctcgttcatatccgatgccatgttctttcagagttgcc 501
           |||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| ||
Sbjct: 757 agggaacttgcctatccagttcctcattcatatcagatgccatgtt-tttcagagtttcc 699

                                                                       
Query: 502 agcccttcaccaataacatccaaaccttcatcctgcttcattctacgcatctcatattcc 561
           ||||||||||| |||| |||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 698 agcccttcaccgataatatccaaaccttcatcctgtttcattttgcgcatctcatattcc 639

                                                    
Query: 562 tgacgaaacttgtttgattcttcagtccccttaaagtactc 602
            |||||||||  ||||||||||| || ||||||||||||||
Sbjct: 638 cgacgaaactgatttgattcttctgttcccttaaagtactc 598
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>ref|XM_475871.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score =  339 bits (171), Expect = 6e-90
 Identities = 289/327 (88%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                       
Query: 276 acattgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcag 335
           ||||||||||| || || || |||||||| || |||||||||||||| || || ||||||
Sbjct: 794 acattgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcag 735

                                                                       
Query: 336 aagttgcgactggatctcatctgaagaatagtctgtttcagtctcacgttggtgttcttc 395
           ||||||||||| ||||||| ||||||||  |||| ||| ||||| |||||||| ||||||
Sbjct: 734 aagttgcgactagatctcagctgaagaacggtctcttttagtctgacgttggtattcttc 675

                                                                       
Query: 396 agatctgcattggctcgatccaccttgtcatccatttcatccatcaagggaacttgccta 455
           | |||||  ||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 674 aaatctgtgttggctctatccaccttctcgtccatttcatccatcaagggaacttgccta 615

                                                                       
Query: 456 tccaattcctcgttcatatccgatgccatgttctttcagagttgccagcccttcaccaat 515
           |||| |||||| |||||||| ||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 614 tccagttcctcattcatatcagatgccatgtt-tttcagagtttccagcccttcaccgat 556

                                                                       
Query: 516 aacatccaaaccttcatcctgcttcattctacgcatctcatattcctgacgaaacttgtt 575
           || |||||||||||||||||| |||||| | ||||||||||||||| |||||||||  ||
Sbjct: 555 aatatccaaaccttcatcctgtttcattttgcgcatctcatattcccgacgaaactgatt 496

                                      
Query: 576 tgattcttcagtccccttaaagtactc 602
           ||||||||| || ||||||||||||||
Sbjct: 495 tgattcttctgttcccttaaagtactc 469
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>dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127N02, full
           insert sequence
          Length = 1252

 Score =  339 bits (171), Expect = 6e-90
 Identities = 289/327 (88%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                       
Query: 276 acattgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcag 335
           ||||||||||| || || || |||||||| || |||||||||||||| || || ||||||
Sbjct: 938 acattgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcag 879

                                                                       
Query: 336 aagttgcgactggatctcatctgaagaatagtctgtttcagtctcacgttggtgttcttc 395
           ||||||||||| ||||||| ||||||||  |||| ||| ||||| |||||||| ||||||
Sbjct: 878 aagttgcgactagatctcagctgaagaacggtctcttttagtctgacgttggtattcttc 819

                                                                       
Query: 396 agatctgcattggctcgatccaccttgtcatccatttcatccatcaagggaacttgccta 455
           | |||||  ||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 818 aaatctgtgttggctctatccaccttctcgtccatttcatccatcaagggaacttgccta 759

                                                                       
Query: 456 tccaattcctcgttcatatccgatgccatgttctttcagagttgccagcccttcaccaat 515
           |||| |||||| |||||||| ||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 758 tccagttcctcattcatatcagatgccatgtt-tttcagagtttccagcccttcaccgat 700

                                                                       
Query: 516 aacatccaaaccttcatcctgcttcattctacgcatctcatattcctgacgaaacttgtt 575
           || |||||||||||||||||| |||||| | ||||||||||||||| |||||||||  ||
Sbjct: 699 aatatccaaaccttcatcctgtttcattttgcgcatctcatattcccgacgaaactgatt 640

                                      
Query: 576 tgattcttcagtccccttaaagtactc 602
           ||||||||| || ||||||||||||||
Sbjct: 639 tgattcttctgttcccttaaagtactc 613
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 69/75 (92%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                          
Query: 463    cctcgttcatatccgatgccatgttctttcagagttgccagcccttcaccaataacatcc 522
              |||| |||||||| ||||||||||| |||||||||| ||||||||||||| |||| ||||
Sbjct: 187422 cctcattcatatcagatgccatgtt-tttcagagtttccagcccttcaccgataatatcc 187364

                             
Query: 523    aaaccttcatcctgc 537
              |||||||||||||||
Sbjct: 187363 aaaccttcatcctgc 187349



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                          
Query: 533    cctgcttcattctacgcatctcatattcctgacgaaacttgtttgattcttcagtcccct 592
              |||| |||||| | ||||||||||||||| |||||||||  ||||||||||| || ||||
Sbjct: 187243 cctgtttcattttgcgcatctcatattcccgacgaaactgatttgattcttctgttccct 187184

                        
Query: 593    taaagtactc 602
              ||||||||||
Sbjct: 187183 taaagtactc 187174



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 279    ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 338
              |||||||| || || || |||||||| || |||||||||||||| || || |||||||||
Sbjct: 187892 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 187833

                                   
Query: 339    ttgcgactggatctcatctga 359
              |||||||| ||||||| ||||
Sbjct: 187832 ttgcgactagatctcagctga 187812



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                               
Query: 417    accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 465
              ||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 187563 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 187515
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>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10,
             complete sequence
          Length = 116469

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 69/75 (92%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                         
Query: 463   cctcgttcatatccgatgccatgttctttcagagttgccagcccttcaccaataacatcc 522
             |||| |||||||| ||||||||||| |||||||||| ||||||||||||| |||| ||||
Sbjct: 24911 cctcattcatatcagatgccatgtt-tttcagagtttccagcccttcaccgataatatcc 24853

                            
Query: 523   aaaccttcatcctgc 537
             |||||||||||||||
Sbjct: 24852 aaaccttcatcctgc 24838



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                         
Query: 533   cctgcttcattctacgcatctcatattcctgacgaaacttgtttgattcttcagtcccct 592
             |||| |||||| | ||||||||||||||| |||||||||  ||||||||||| || ||||
Sbjct: 24732 cctgtttcattttgcgcatctcatattcccgacgaaactgatttgattcttctgttccct 24673

                       
Query: 593   taaagtactc 602
             ||||||||||
Sbjct: 24672 taaagtactc 24663



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                         
Query: 279   ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 338
             |||||||| || || || |||||||| || |||||||||||||| || || |||||||||
Sbjct: 25381 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 25322

                                  
Query: 339   ttgcgactggatctcatctga 359
             |||||||| ||||||| ||||
Sbjct: 25321 ttgcgactagatctcagctga 25301



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 417   accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 465
             ||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 25052 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 25004
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 69/75 (92%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                            
Query: 463      cctcgttcatatccgatgccatgttctttcagagttgccagcccttcaccaataacatcc 522
                |||| |||||||| ||||||||||| |||||||||| ||||||||||||| |||| ||||
Sbjct: 27312454 cctcattcatatcagatgccatgtt-tttcagagtttccagcccttcaccgataatatcc 27312396

                               
Query: 523      aaaccttcatcctgc 537
                |||||||||||||||
Sbjct: 27312395 aaaccttcatcctgc 27312381



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                            
Query: 533      cctgcttcattctacgcatctcatattcctgacgaaacttgtttgattcttcagtcccct 592
                |||| |||||| | ||||||||||||||| |||||||||  ||||||||||| || ||||
Sbjct: 27312275 cctgtttcattttgcgcatctcatattcccgacgaaactgatttgattcttctgttccct 27312216

                          
Query: 593      taaagtactc 602
                ||||||||||
Sbjct: 27312215 taaagtactc 27312206



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 279      ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 338
                |||||||| || || || |||||||| || |||||||||||||| || || |||||||||
Sbjct: 27312924 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 27312865

                                     
Query: 339      ttgcgactggatctcatctga 359
                |||||||| ||||||| ||||
Sbjct: 27312864 ttgcgactagatctcagctga 27312844



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 417      accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 465
                ||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 27312595 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 27312547
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>ref|NM_111809.3| Arabidopsis thaliana SYP71 (SYNTAXIN OF PLANTS 71) AT3G09740
           (SYP71) mRNA, complete cds
          Length = 1229

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 429 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 488
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 759 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 700

             
Query: 489 tt 490
           ||
Sbjct: 699 tt 698
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>gb|AY090358.1| Arabidopsis thaliana AT3g09740/F11F8_33 mRNA, complete cds
          Length = 1143

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 429 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 488
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 743 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 684

             
Query: 489 tt 490
           ||
Sbjct: 683 tt 682
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>gb|BT024483.1| Arabidopsis thaliana At3g09740 mRNA, complete cds
          Length = 801

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 429 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 488
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 638 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 579

             
Query: 489 tt 490
           ||
Sbjct: 578 tt 577
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>gb|AF355757.1|AF355757 Arabidopsis thaliana syntaxin of plants 71 (SYP71) mRNA, complete
           cds
          Length = 1033

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 429 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 488
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 675 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 616

             
Query: 489 tt 490
           ||
Sbjct: 615 tt 614
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>gb|AY107058.1| Zea mays PCO100771 mRNA sequence
          Length = 737

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 548 gcatctcatattcctgacgaaacttgtttgattcttcagtccccttaaagtactc 602
           |||||||||||||| |||| ||||  || |||||||| |||||||||||||||||
Sbjct: 737 gcatctcatattcccgacggaactgattagattcttctgtccccttaaagtactc 683
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>emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, BAC clone F18N11
          Length = 91274

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 300   ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctga 359
             ||||| || |||||||| || | |||||||||||||||||| || ||||||| |||||||
Sbjct: 42227 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctga 42286

              
Query: 360   a 360
             |
Sbjct: 42287 a 42287
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>ref|NM_114397.1| Arabidopsis thaliana SYP72 (SYNTAXIN OF PLANTS 72) AT3G45280
           (SYP72) mRNA, complete cds
          Length = 872

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 300 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 358
           ||||| || |||||||| || | |||||||||||||||||| || ||||||| ||||||
Sbjct: 806 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 748



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 529 tcatcctgcttcattctacgcatctcatattcctgacgaaacttgtttgattcttca 585
           |||||||| ||| |||| | |||||||||||| || ||||||| | | |||||||||
Sbjct: 578 tcatcctgtttctttcttctcatctcatattcttgtcgaaactggctggattcttca 522



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 381 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 440
           |||||||| ||||||| ||| | | |||||| ||| |||||    |||||||| ||||||
Sbjct: 725 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 666

                                           
Query: 441 aagggaacttgcctatccaattcctcgttcat 472
           || || |||||| | || | ||||||||||||
Sbjct: 665 aatgggacttgcttgtcaagttcctcgttcat 634
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>gb|DQ446736.1| Arabidopsis thaliana clone pENTR221-At3g45280 syntaxin 72
           (At3g45280) mRNA, complete cds
          Length = 804

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 300 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 358
           ||||| || |||||||| || | |||||||||||||||||| || ||||||| ||||||
Sbjct: 770 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 712



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 529 tcatcctgcttcattctacgcatctcatattcctgacgaaacttgtttgattcttca 585
           |||||||| ||| |||| | |||||||||||| || ||||||| | | |||||||||
Sbjct: 542 tcatcctgtttctttcttctcatctcatattcttgtcgaaactggctggattcttca 486



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 381 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 440
           |||||||| ||||||| ||| | | |||||| ||| |||||    |||||||| ||||||
Sbjct: 689 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 630

                                           
Query: 441 aagggaacttgcctatccaattcctcgttcat 472
           || || |||||| | || | ||||||||||||
Sbjct: 629 aatgggacttgcttgtcaagttcctcgttcat 598
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>gb|AF355758.1|AF355758 Arabidopsis thaliana syntaxin of plants 72 (SYP72) mRNA, complete
           cds
          Length = 872

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 300 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 358
           ||||| || |||||||| || | |||||||||||||||||| || ||||||| ||||||
Sbjct: 806 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 748



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 529 tcatcctgcttcattctacgcatctcatattcctgacgaaacttgtttgattcttca 585
           |||||||| ||| |||| | |||||||||||| || ||||||| | | |||||||||
Sbjct: 578 tcatcctgtttctttcttctcatctcatattcttgtcgaaactggctggattcttca 522



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 381 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 440
           |||||||| ||||||| ||| | | |||||| ||| |||||    |||||||| ||||||
Sbjct: 725 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 666

                                           
Query: 441 aagggaacttgcctatccaattcctcgttcat 472
           || || |||||| | || | ||||||||||||
Sbjct: 665 aatgggacttgcttgtcaagttcctcgttcat 634
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>emb|BX822780.1|CNS0A64U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB63ZG09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1147

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 429 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 488
           |||||||||||||  ||||||||  ||| || ||||||||||||||  || |||||||||
Sbjct: 742 atttcatccatcagtggaacttgtttattcagttcctcgttcatattagaagccatgttc 683

             
Query: 489 tt 490
           ||
Sbjct: 682 tt 681
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>ref|NM_116010.1| Arabidopsis thaliana SYP73 (SYNTAXIN OF PLANTS 73) AT3G61450
           (SYP73) mRNA, complete cds
          Length = 884

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 324 atgtcgatgcagaagttgcgactggatctca 354
           ||||| |||||||||||||| ||||||||||
Sbjct: 795 atgtctatgcagaagttgcggctggatctca 765
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>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19
          Length = 95993

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 324   atgtcgatgcagaagttgcgactggatctca 354
             ||||| |||||||||||||| ||||||||||
Sbjct: 33946 atgtctatgcagaagttgcggctggatctca 33916
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>gb|AF355759.1|AF355759 Arabidopsis thaliana syntaxin of plants 73 (SYP73) mRNA, complete
           cds
          Length = 884

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 324 atgtcgatgcagaagttgcgactggatctca 354
           ||||| |||||||||||||| ||||||||||
Sbjct: 795 atgtctatgcagaagttgcggctggatctca 765
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>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence
          Length = 110895

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 432   tcatccatcaagggaacttgcctatccaattcct 465
             ||||||||||  |||||||||||||| |||||||
Sbjct: 93435 tcatccatcagtggaacttgcctatcaaattcct 93468



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 61/73 (83%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                         
Query: 463   cctcgttcatatccgatgccatgttctttcagagttgccagcccttcaccaataacatcc 522
             |||||||||||||   ||||||||| ||||| |||  |||  |||||  |||| ||||||
Sbjct: 93547 cctcgttcatatcgtgtgccatgtt-tttcaaagtatccaatccttctgcaatcacatcc 93605

                          
Query: 523   aaaccttcatcct 535
             |||||||||||||
Sbjct: 93606 aaaccttcatcct 93618
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>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete
             sequence
          Length = 204907

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 433   catccatcaagggaacttgcct 454
             ||||||||||||||||||||||
Sbjct: 64051 catccatcaagggaacttgcct 64072
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>gb|AE004331.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 239
            of 251 of the complete chromosome
          Length = 13083

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 424  catccatttcatccatcaagg 444
            |||||||||||||||||||||
Sbjct: 8970 catccatttcatccatcaagg 8990
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>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 429   atttcatccatcaagggaacttgcctatccaattcct 465
             |||||||||||||  |||||||| ||||||| |||||
Sbjct: 89310 atttcatccatcagtggaacttgtctatccagttcct 89274



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 463   cctcgttcatatccgatgccatgttctt 490
             ||||||||||||| || |||||||||||
Sbjct: 89192 cctcgttcatatcagaagccatgttctt 89165
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>gb|AC134338.1| Homo sapiens BAC clone RP11-713A18 from 2, complete sequence
          Length = 30804

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 479  tgccatgttctttcagagttg 499
            |||||||||||||||||||||
Sbjct: 3268 tgccatgttctttcagagttg 3288
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>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 422     gtcatccatttcatccatcaa 442
               |||||||||||||||||||||
Sbjct: 3007112 gtcatccatttcatccatcaa 3007132
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>gb|AY366441.1| Lemur catta microsatellite Lc5 sequence
          Length = 393

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 348 gatctcatctgaagaatagtctgtttcag 376
           |||||||||||||  ||||||||||||||
Sbjct: 393 gatctcatctgaaagatagtctgtttcag 365
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>ref|NM_101867.1| Arabidopsis thaliana hydrolase, acting on ester bonds / lipase/
            structural constituent of cell wall AT1G20130 mRNA,
            complete cds
          Length = 3021

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  ataataataatctaacaaca 127
            ||||||||||||||||||||
Sbjct: 1457 ataataataatctaacaaca 1476
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>ref|XM_638730.1| Dictyostelium discoideum hypothetical protein (DDB0217625), partial
            mRNA
          Length = 6324

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 108  ataataataatctaacaacaccat 131
            ||||||||||| ||||||||||||
Sbjct: 1712 ataataataatataacaacaccat 1735
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     aatgcaagacactaccgact 234
               ||||||||||||||||||||
Sbjct: 2310266 aatgcaagacactaccgact 2310247
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     aatgcaagacactaccgact 234
               ||||||||||||||||||||
Sbjct: 2161439 aatgcaagacactaccgact 2161420
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>emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, complete sequence
          Length = 261943

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 522    caaaccttcatcctgcttca 541
              ||||||||||||||||||||
Sbjct: 120187 caaaccttcatcctgcttca 120206
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>gb|AC116633.4| Homo sapiens BAC clone RP11-452C8 from 4, complete sequence
          Length = 136725

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   catcaagggaacttgcctat 456
             ||||||||||||||||||||
Sbjct: 40591 catcaagggaacttgcctat 40572
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>gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, complete sequence
          Length = 160766

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     cacatataatcatcactgcttcat 99
              ||||||||||||||||| ||||||
Sbjct: 109372 cacatataatcatcactccttcat 109395
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>gb|AC084834.4| Homo sapiens chromosome 8, clone RP11-107M13, complete sequence
          Length = 153304

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     cacatataatcatcactgcttcat 99
              ||||||||||||||||| ||||||
Sbjct: 149068 cacatataatcatcactccttcat 149045
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>emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 in linkage group 10,
             complete sequence
          Length = 167208

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   attacacagatgagacgaaa 154
             ||||||||||||||||||||
Sbjct: 23810 attacacagatgagacgaaa 23791
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 95      ttcatcaacaagcataataataatctaa 122
               |||||| |||| ||||||||||||||||
Sbjct: 8273203 ttcatctacaaccataataataatctaa 8273176
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>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4,
              complete sequence
          Length = 413138

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 108    ataataataatctaacaacaccat 131
              ||||||||||| ||||||||||||
Sbjct: 125910 ataataataatataacaacaccat 125933
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>gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 92710

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   ataataataatctaacaaca 127
             ||||||||||||||||||||
Sbjct: 30358 ataataataatctaacaaca 30339
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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0603C10
          Length = 187620

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 95    ttcatcaacaagcataataataatctaa 122
             |||||| |||| ||||||||||||||||
Sbjct: 66708 ttcatctacaaccataataataatctaa 66681
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>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
             complete sequence
          Length = 129782

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   attacacagatgagacgaaa 154
             ||||||||||||||||||||
Sbjct: 70544 attacacagatgagacgaaa 70525
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>emb|AJ412756.1|AED412756 Allium eduardii 5.8S rRNA gene, internal transcribed spacer 1
           (ITS1) and internal transcribed spacer 2 (ITS2)
          Length = 646

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 525 accttcatcctgcttcattc 544
           ||||||||||||||||||||
Sbjct: 103 accttcatcctgcttcattc 122
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>emb|AJ411959.1|AED411959 Allium eduardii 5.8S ribosomal RNA, internal transcribed spacer 1
           and internal transcribed spacer 2
          Length = 647

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 525 accttcatcctgcttcattc 544
           ||||||||||||||||||||
Sbjct: 103 accttcatcctgcttcattc 122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,506,666
Number of Sequences: 3902068
Number of extensions: 6506666
Number of successful extensions: 98205
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97976
Number of HSP's gapped (non-prelim): 222
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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