ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16n24 |
|---|---|
| Clone Library Name | barley_pub |
>RIR2_SHV21 (Q01038) Ribonucleoside-diphosphate reductase small chain (EC| 1.17.4.1) (Ribonucleotide reductase small subunit) Length = 305 Score = 30.4 bits (67), Expect = 1.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 51 VTVFLVLVSNFFPQHFLKINLFHGLGILNSVCL 149 + +FL++ FF F I LF GI+N +CL Sbjct: 150 ILLFLLVEGIFFISSFFSIGLFRVRGIMNGICL 182
>GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DNA-binding| protein xGLI3) (xGLI-3) Length = 1569 Score = 30.0 bits (66), Expect = 1.8 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = +2 Query: 11 ASSGGYFPSGTKHGNRVPRPGEQ---LFSATLSQNQSFPRAWHSQQR 142 + S Y PS K+G R P Q L++ + Q Q+ P++ SQQR Sbjct: 1164 SGSAEYSPSRLKYGQRFPTQQNQPFGLYNNMMVQQQNVPKSGLSQQR 1210
>Y518_XYLFT (Q87E11) Hypothetical UPF0192 protein PD0518 precursor| Length = 1641 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = +3 Query: 12 PALEGTSRVAPSMVTV 59 PAL GT RVAP+MVTV Sbjct: 1623 PALRGTGRVAPAMVTV 1638
>PQQC_PSEPK (Q88QV6) Pyrroloquinoline-quinone synthase (EC 1.3.3.11) (Coenzyme| PQQ synthesis protein C) (Pyrroloquinoline quinone biosynthesis protein C) Length = 251 Score = 28.5 bits (62), Expect = 5.3 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = -2 Query: 137 VENAKPVEKIDFEKVLRKKVAHQDEEHGYHAWCHSG----STLQSW 12 + +A P+ +FE+ LR K A+ H YH + G +Q W Sbjct: 1 MSDALPMSPAEFEQALRAKGAYYHIHHPYHVAMYQGRATREQIQGW 46
>GPMA2_NITMU (Q2Y9Z7) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (PGAM 2) (BPG-dependent PGAM 2) (dPGM 2) Length = 251 Score = 28.5 bits (62), Expect = 5.3 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +1 Query: 10 RQLWRVLPEWHQAW*PCSSSW 72 R LW VL E Q W P SSW Sbjct: 63 RTLWIVLDEMDQMWIPVESSW 83
>GPMA_SHIFL (P62710) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 66 LWNVLDELDQAWLPVEKSW 84
>GPMA_SALTY (Q8ZQS2) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 66 LWNVLDELDQAWLPVEKSW 84
>GPMA_SALTI (Q8Z8B2) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 66 LWNVLDELDQAWLPVEKSW 84
>GPMA_ECOLI (P62707) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 66 LWNVLDELDQAWLPVEKSW 84
>GPMA_ECOL6 (P62708) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 66 LWNVLDELDQAWLPVEKSW 84
>GPMA_ECO57 (P62709) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 249 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 66 LWNVLDELDQAWLPVEKSW 84
>GPMA_SHISS (Q3Z455) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 250 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 67 LWNVLDELDQAWLPVEKSW 85
>GPMA_SHIDS (Q32IH0) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 250 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 67 LWNVLDELDQAWLPVEKSW 85
>GPMA_SHIBS (Q324G4) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 250 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 67 LWNVLDELDQAWLPVEKSW 85
>GPMA_SALPA (Q5PG75) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 250 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 67 LWNVLDELDQAWLPVEKSW 85
>GPMA_SALCH (Q57RI5) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 250 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 67 LWNVLDELDQAWLPVEKSW 85
>GPMA_ERWCT (Q6D7E3) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 250 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 16 LWRVLPEWHQAW*PCSSSW 72 LW VL E QAW P SW Sbjct: 67 LWSVLDELDQAWLPVEKSW 85 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,462,775 Number of Sequences: 219361 Number of extensions: 434514 Number of successful extensions: 1929 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1892 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1929 length of database: 80,573,946 effective HSP length: 28 effective length of database: 74,431,838 effective search space used: 1786364112 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
