ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17c23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNJCD_HUMAN (O75165) DnaJ homolog subfamily C member 13 (Require... 33 0.58

>DNJCD_HUMAN (O75165) DnaJ homolog subfamily C member 13 (Required for|
            receptor-mediated endocytosis 8)
          Length = 2243

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 18   QTTSHQNSAVPETARHVHHRKQQQRLLLGMAAQLNALVKVQNENKSRQRITAFPCSSIS 194
            Q  +H+N+A+P++A  V H   +  L +   A L  +  + N  K R       C +I+
Sbjct: 2056 QAMNHRNNAIPKSAIRVIHALSENELCVRAMASLETIGPLMNGMKKRADTVGLACEAIN 2114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,974,495
Number of Sequences: 219361
Number of extensions: 2223976
Number of successful extensions: 5672
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5670
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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