ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17c23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK122124.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
3dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
4dbj|AP006751.2| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
5dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
6gb|AC119868.2| Homo sapiens chromosome 18, clone RP11-465I4, com... 44 0.58
7gb|AC154881.6| Mus musculus chromosome 15, clone RP24-259H19, co... 44 0.58
8gb|BC070527.1| Xenopus laevis hypothetical protein MGC78803, mRN... 42 2.3
9gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, comple... 42 2.3
10emb|CR848661.5| Zebrafish DNA sequence from clone CH211-187B9 in... 42 2.3
11gb|AC158655.4| Mus musculus BAC RP23-406J21 (Roswell Park Cance... 42 2.3
12emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in ... 42 2.3
13gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 42 2.3
14dbj|AB095024.1| Pseudomonas sp. KNA6-3 arcB gene for probable ae... 42 2.3
15emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chro... 42 2.3
16gb|AC113055.9| Mus musculus chromosome 5, clone RP23-251M20, com... 40 9.0
17gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 40 9.0
18gb|AC091553.15| Trypanosoma brucei chromosome 7 clone RPCI93-10C... 40 9.0
19ref|XM_369092.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 9.0
20gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 9.0
21gb|AE009087.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 9.0
22gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, com... 40 9.0
23ref|XM_820061.1| Trypanosoma brucei TREU927 clone RPCI93-10C21 h... 40 9.0
24ref|XM_386522.1| Gibberella zeae PH-1 chromosome 3 conserved hyp... 40 9.0
25gb|AC122814.3| Mus musculus BAC clone RP23-234A12 from 6, comple... 40 9.0
26ref|XM_738095.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.0
27gb|AF100657.2| Caenorhabditis elegans cosmid F52C12, complete se... 40 9.0
28gb|DQ127638.1| Emiliania huxleyi virus 163 clone mike265.seq par... 40 9.0
29emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 9.0
30emb|BX571864.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 9.0
31emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ... 40 9.0
32emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC... 40 9.0
33emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chro... 40 9.0
34gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 9.0
35gb|AC009690.17| Homo sapiens chromosome 15, clone RP11-106M3, co... 40 9.0
36gb|AC024579.5| Homo sapiens chromosome 5 clone CTD-2582M21, comp... 40 9.0
37gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, comple... 40 9.0
38gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 9.0
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
40dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
41gb|AC174866.1| Mus musculus BAC clone RP24-322E13 from chromosom... 40 9.0
42emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 40 9.0
43gb|AC171501.2| Mus musculus BAC clone RP23-255N3 from chromosome... 40 9.0
44dbj|AP006145.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.0 
>dbj|AK122124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131O18, full
            insert sequence
          Length = 3794

 Score =  210 bits (106), Expect = 4e-51
 Identities = 199/230 (86%)
 Strand = Plus / Minus

                                                                        
Query: 429  gttccatggaatacggtgaggtgtcccccgttaagataagcttccatctgatcctgaggg 488
            |||||||||||||  || |||||| |||| ||||||||||| |||  ||| |||||||| 
Sbjct: 3259 gttccatggaatatagtcaggtgtgccccattaagataagcatccgactgttcctgagga 3200

                                                                        
Query: 489  attttagagaagccaaacttcttcatccagatggcttcagcttcatgggcggccggaagc 548
            ||||||| ||||||||| || |||||||||||| |||||||||| |||||||| ||||||
Sbjct: 3199 attttagtgaagccaaatttgttcatccagatgccttcagcttcctgggcggctggaagc 3140

                                                                        
Query: 549  atgaagtgtttcaccttcagcgaaactagcagcctttcgatgcaagagaacaacacttgg 608
            ||||||||||| | |||||| ||||  |||| ||| || ||||| ||||||||  |||||
Sbjct: 3139 atgaagtgtttgatcttcagagaaataagcatcctctctatgcacgagaacaaagcttgg 3080

                                                              
Query: 609  aagtagcccagtccttgaagatccatacttgtagcaaccagtggcagttc 658
            |||||||||||||||||||| ||  ||||||||||||| |||||||||||
Sbjct: 3079 aagtagcccagtccttgaaggtctttacttgtagcaactagtggcagttc 3030



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 41/47 (87%), Gaps = 3/47 (6%)
 Strand = Plus / Minus

                                                           
Query: 284  ccatgcttcatcatcttattatgtacagttaccagcagagcctcaaa 330
            |||||||||||||||   ||||||||||||  ||||||||| |||||
Sbjct: 3389 ccatgcttcatcatc---ttatgtacagttgtcagcagagcttcaaa 3346
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                          
Query: 480    tcctgagggattttagagaagccaaacttcttcatccagatggcttcagcttcatgggcg 539
              |||||||| ||||||| ||||||||| || |||||||||||| |||||||||| ||||||
Sbjct: 136603 tcctgaggaattttagtgaagccaaatttgttcatccagatgccttcagcttcctgggcg 136544

                                                                          
Query: 540    gccggaagcatgaagtgtttcaccttcagcgaaactagcagcctttcgatgcaagagaac 599
              || ||||||||||||||||| | |||||| ||||  |||| ||| || ||||| ||||||
Sbjct: 136543 gctggaagcatgaagtgtttgatcttcagagaaataagcatcctctctatgcacgagaac 136484

                                
Query: 600    aacacttggaagtagccc 617
              ||  ||||||||||||||
Sbjct: 136483 aaagcttggaagtagccc 136466



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 616    ccagtccttgaagatccatacttgtagcaaccagtggcagttc 658
              ||||||||||||| ||  ||||||||||||| |||||||||||
Sbjct: 136332 ccagtccttgaaggtctttacttgtagcaactagtggcagttc 136290



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 41/47 (87%), Gaps = 3/47 (6%)
 Strand = Plus / Minus

                                                             
Query: 284    ccatgcttcatcatcttattatgtacagttaccagcagagcctcaaa 330
              |||||||||||||||   ||||||||||||  ||||||||| |||||
Sbjct: 136859 ccatgcttcatcatc---ttatgtacagttgtcagcagagcttcaaa 136816



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 429    gttccatggaatacggtgaggtgtcccccgttaagataagc 469
              |||||||||||||  || |||||| |||| |||||||||||
Sbjct: 136729 gttccatggaatatagtcaggtgtgccccattaagataagc 136689
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>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0075G19
          Length = 163558

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                        
Query: 480  tcctgagggattttagagaagccaaacttcttcatccagatggcttcagcttcatgggcg 539
            |||||||| ||||||| ||||||||| || |||||||||||| |||||||||| ||||||
Sbjct: 1499 tcctgaggaattttagtgaagccaaatttgttcatccagatgccttcagcttcctgggcg 1440

                                                                        
Query: 540  gccggaagcatgaagtgtttcaccttcagcgaaactagcagcctttcgatgcaagagaac 599
            || ||||||||||||||||| | |||||| ||||  |||| ||| || ||||| ||||||
Sbjct: 1439 gctggaagcatgaagtgtttgatcttcagagaaataagcatcctctctatgcacgagaac 1380

                              
Query: 600  aacacttggaagtagccc 617
            ||  ||||||||||||||
Sbjct: 1379 aaagcttggaagtagccc 1362



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 616  ccagtccttgaagatccatacttgtagcaaccagtggcagttc 658
            ||||||||||||| ||  ||||||||||||| |||||||||||
Sbjct: 1228 ccagtccttgaaggtctttacttgtagcaactagtggcagttc 1186



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 41/47 (87%), Gaps = 3/47 (6%)
 Strand = Plus / Minus

                                                           
Query: 284  ccatgcttcatcatcttattatgtacagttaccagcagagcctcaaa 330
            |||||||||||||||   ||||||||||||  ||||||||| |||||
Sbjct: 1755 ccatgcttcatcatc---ttatgtacagttgtcagcagagcttcaaa 1712



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 429  gttccatggaatacggtgaggtgtcccccgttaagataagc 469
            |||||||||||||  || |||||| |||| |||||||||||
Sbjct: 1625 gttccatggaatatagtcaggtgtgccccattaagataagc 1585
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>dbj|AP006751.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1460A05
          Length = 143371

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                          
Query: 480    tcctgagggattttagagaagccaaacttcttcatccagatggcttcagcttcatgggcg 539
              |||||||| ||||||| ||||||||| || |||||||||||| |||||||||| ||||||
Sbjct: 136603 tcctgaggaattttagtgaagccaaatttgttcatccagatgccttcagcttcctgggcg 136544

                                                                          
Query: 540    gccggaagcatgaagtgtttcaccttcagcgaaactagcagcctttcgatgcaagagaac 599
              || ||||||||||||||||| | |||||| ||||  |||| ||| || ||||| ||||||
Sbjct: 136543 gctggaagcatgaagtgtttgatcttcagagaaataagcatcctctctatgcacgagaac 136484

                                
Query: 600    aacacttggaagtagccc 617
              ||  ||||||||||||||
Sbjct: 136483 aaagcttggaagtagccc 136466



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 616    ccagtccttgaagatccatacttgtagcaaccagtggcagttc 658
              ||||||||||||| ||  ||||||||||||| |||||||||||
Sbjct: 136332 ccagtccttgaaggtctttacttgtagcaactagtggcagttc 136290



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 41/47 (87%), Gaps = 3/47 (6%)
 Strand = Plus / Minus

                                                             
Query: 284    ccatgcttcatcatcttattatgtacagttaccagcagagcctcaaa 330
              |||||||||||||||   ||||||||||||  ||||||||| |||||
Sbjct: 136859 ccatgcttcatcatc---ttatgtacagttgtcagcagagcttcaaa 136816



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 429    gttccatggaatacggtgaggtgtcccccgttaagataagc 469
              |||||||||||||  || |||||| |||| |||||||||||
Sbjct: 136729 gttccatggaatatagtcaggtgtgccccattaagataagc 136689
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>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0681G01, complete sequence
          Length = 184118

 Score =  131 bits (66), Expect = 3e-27
 Identities = 120/138 (86%)
 Strand = Plus / Plus

                                                                         
Query: 480   tcctgagggattttagagaagccaaacttcttcatccagatggcttcagcttcatgggcg 539
             |||||||| ||||||| ||||||||| || |||||||||||| |||||||||| ||||||
Sbjct: 83939 tcctgaggaattttagtgaagccaaatttgttcatccagatgccttcagcttcctgggcg 83998

                                                                         
Query: 540   gccggaagcatgaagtgtttcaccttcagcgaaactagcagcctttcgatgcaagagaac 599
             || ||||||||||||||||| | |||||| ||||  |||| ||| || ||||| ||||||
Sbjct: 83999 gctggaagcatgaagtgtttgatcttcagagaaataagcatcctctctatgcacgagaac 84058

                               
Query: 600   aacacttggaagtagccc 617
             ||  ||||||||||||||
Sbjct: 84059 aaagcttggaagtagccc 84076



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 616   ccagtccttgaagatccatacttgtagcaaccagtggcagttc 658
             ||||||||||||| ||  ||||||||||||| |||||||||||
Sbjct: 84210 ccagtccttgaaggtctttacttgtagcaactagtggcagttc 84252



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 429   gttccatggaatacggtgaggtgtcccccgttaagataagc 469
             |||||||||||||  || |||||| |||| |||||||||||
Sbjct: 83813 gttccatggaatatagtcaggtgtgccccattaagataagc 83853



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 41/47 (87%), Gaps = 3/47 (6%)
 Strand = Plus / Plus

                                                            
Query: 284   ccatgcttcatcatcttattatgtacagttaccagcagagcctcaaa 330
             |||||||||||||||   ||||||||||||  ||||||||| |||||
Sbjct: 83683 ccatgcttcatcatc---ttatgtacagttgtcagcagagcttcaaa 83726
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>gb|AC119868.2| Homo sapiens chromosome 18, clone RP11-465I4, complete sequence
          Length = 174780

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 599    caacacttggaagtagcccagt 620
              ||||||||||||||||||||||
Sbjct: 111100 caacacttggaagtagcccagt 111079
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>gb|AC154881.6| Mus musculus chromosome 15, clone RP24-259H19, complete sequence
          Length = 180231

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 36     aattctgcagttcctgagacggccag 61
              |||| |||||||||||||||||||||
Sbjct: 125777 aattgtgcagttcctgagacggccag 125802
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>gb|BC070527.1| Xenopus laevis hypothetical protein MGC78803, mRNA (cDNA clone
           MGC:78803 IMAGE:3402304), complete cds
          Length = 4230

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 400 gcaatggaatggccttgtataggtt 424
           ||||||||||||||||||| |||||
Sbjct: 903 gcaatggaatggccttgtaaaggtt 927
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>gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, complete sequence
          Length = 167364

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 173    tttcccctgttccagcatctc 193
              |||||||||||||||||||||
Sbjct: 130102 tttcccctgttccagcatctc 130122
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>emb|CR848661.5| Zebrafish DNA sequence from clone CH211-187B9 in linkage group 15,
             complete sequence
          Length = 149649

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 482   ctgagggattttagagaagcc 502
             |||||||||||||||||||||
Sbjct: 85967 ctgagggattttagagaagcc 85987
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>gb|AC158655.4| Mus musculus  BAC RP23-406J21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 201519

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 506    cttcttcatccagatggcttc 526
              |||||||||||||||||||||
Sbjct: 112798 cttcttcatccagatggcttc 112778
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>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11,
              complete sequence
          Length = 183599

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 482    ctgagggattttagagaagcc 502
              |||||||||||||||||||||
Sbjct: 122606 ctgagggattttagagaagcc 122586
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    caaatgacaaacatgtctgat 347
              |||||||||||||||||||||
Sbjct: 444322 caaatgacaaacatgtctgat 444342
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>dbj|AB095024.1| Pseudomonas sp. KNA6-3 arcB gene for probable aerobic respiration
           control sensor protein ArcB, partial sequence
          Length = 959

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 179 ctgttccagcatctccacatc 199
           |||||||||||||||||||||
Sbjct: 806 ctgttccagcatctccacatc 786
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>emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chromosome 2, complete
             sequence
          Length = 90551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   tttcccctgttccagcatctc 193
             |||||||||||||||||||||
Sbjct: 75534 tttcccctgttccagcatctc 75554
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>gb|AC113055.9| Mus musculus chromosome 5, clone RP23-251M20, complete sequence
          Length = 185733

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    ccagcagagcctcaaatgac 334
              ||||||||||||||||||||
Sbjct: 125671 ccagcagagcctcaaatgac 125690
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 501     ccaaacttcttcatccagat 520
               ||||||||||||||||||||
Sbjct: 1448019 ccaaacttcttcatccagat 1448038
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>gb|AC091553.15| Trypanosoma brucei chromosome 7 clone RPCI93-10C21, complete sequence
          Length = 166619

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 501    ccaaacttcttcatccagat 520
              ||||||||||||||||||||
Sbjct: 149996 ccaaacttcttcatccagat 149977
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>ref|XM_369092.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00152.4) partial mRNA
          Length = 2514

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 40  ctgcagttcctgagacggccaggc 63
           |||||||||||| |||||||||||
Sbjct: 521 ctgcagttcctgggacggccaggc 498
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 364     caaaagggcggcttcgacgtccat 387
               |||||| |||||||||||||||||
Sbjct: 1096986 caaaagcgcggcttcgacgtccat 1097009
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>gb|AE009087.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 113
            of 256 of the complete sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 539  ggccggaagcatgaagtgtttcac 562
            ||||||||||||||| ||||||||
Sbjct: 2433 ggccggaagcatgaactgtttcac 2456
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>gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, complete sequence
          Length = 197052

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 591    caagagaacaacacttggaa 610
              ||||||||||||||||||||
Sbjct: 132986 caagagaacaacacttggaa 132967
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>ref|XM_820061.1| Trypanosoma brucei TREU927 clone RPCI93-10C21 hypothetical protein
            (Tb927.7.5390) partial mRNA
          Length = 4224

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 501  ccaaacttcttcatccagat 520
            ||||||||||||||||||||
Sbjct: 2088 ccaaacttcttcatccagat 2107
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>ref|XM_386522.1| Gibberella zeae PH-1 chromosome 3 conserved hypothetical protein
           (FG06346.1) partial mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 274 catcttttcgccatgcttcatcatctta 301
           |||||||||||  |||||||||||||||
Sbjct: 477 catcttttcgctctgcttcatcatctta 450
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>gb|AC122814.3| Mus musculus BAC clone RP23-234A12 from 6, complete sequence
          Length = 144136

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    cagcatctccacatctatct 204
              ||||||||||||||||||||
Sbjct: 133715 cagcatctccacatctatct 133734
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>ref|XM_738095.1| Plasmodium chabaudi chabaudi hypothetical protein (PC104837.00.0)
           partial mRNA
          Length = 825

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 tatcttcatcaaacatttcc 219
           ||||||||||||||||||||
Sbjct: 199 tatcttcatcaaacatttcc 180
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>gb|AF100657.2| Caenorhabditis elegans cosmid F52C12, complete sequence
          Length = 45232

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   taattgttaccatcttttcg 283
             ||||||||||||||||||||
Sbjct: 35594 taattgttaccatcttttcg 35575
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>gb|DQ127638.1| Emiliania huxleyi virus 163 clone mike265.seq partial sequence
          Length = 1174

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 503 aaacttcttcatccagatgg 522
           ||||||||||||||||||||
Sbjct: 685 aaacttcttcatccagatgg 704
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 364     caaaagggcggcttcgacgtccat 387
               |||||| |||||||||||||||||
Sbjct: 2414476 caaaagcgcggcttcgacgtccat 2414499
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>emb|BX571864.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             6/17
          Length = 349071

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   ttttcgccatgcttcatcat 297
             ||||||||||||||||||||
Sbjct: 50506 ttttcgccatgcttcatcat 50487
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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    acgtccatgctaagattcaggcaa 403
              ||||| ||||||||||||||||||
Sbjct: 100248 acgtcaatgctaagattcaggcaa 100225
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>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7J7 (ESSA project)
          Length = 91387

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   acgtccatgctaagattcaggcaa 403
             ||||| ||||||||||||||||||
Sbjct: 42045 acgtcaatgctaagattcaggcaa 42022
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>emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chromosome 11, complete
             sequence
          Length = 155196

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tccccttttagattttgcag 263
             ||||||||||||||||||||
Sbjct: 60926 tccccttttagattttgcag 60907
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 539     ggccggaagcatgaagtgtttcac 562
               ||||||||||||||| ||||||||
Sbjct: 1238167 ggccggaagcatgaactgtttcac 1238190
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>gb|AC009690.17| Homo sapiens chromosome 15, clone RP11-106M3, complete sequence
          Length = 184640

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    atctccacatctatcttcat 208
              ||||||||||||||||||||
Sbjct: 123775 atctccacatctatcttcat 123794
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>gb|AC024579.5| Homo sapiens chromosome 5 clone CTD-2582M21, complete sequence
          Length = 149870

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  gatcctgagggattttagag 497
            ||||||||||||||||||||
Sbjct: 8664 gatcctgagggattttagag 8683
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>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence
          Length = 132573

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   gatcctgagggattttagag 497
             ||||||||||||||||||||
Sbjct: 10726 gatcctgagggattttagag 10707
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 364    caaaagggcggcttcgacgtccat 387
              |||||| |||||||||||||||||
Sbjct: 321574 caaaagcgcggcttcgacgtccat 321551
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 549      atgaagtgtttcaccttcag 568
                ||||||||||||||||||||
Sbjct: 21352138 atgaagtgtttcaccttcag 21352157
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>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0496H05
          Length = 147817

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 549   atgaagtgtttcaccttcag 568
             ||||||||||||||||||||
Sbjct: 74076 atgaagtgtttcaccttcag 74095
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>gb|AC174866.1| Mus musculus BAC clone RP24-322E13 from chromosome 6, complete sequence
          Length = 168541

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   cagcatctccacatctatct 204
             ||||||||||||||||||||
Sbjct: 79613 cagcatctccacatctatct 79632
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>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    aaacttcttcatccagatgg 522
              ||||||||||||||||||||
Sbjct: 366784 aaacttcttcatccagatgg 366803
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>gb|AC171501.2| Mus musculus BAC clone RP23-255N3 from chromosome 6, complete sequence
          Length = 170938

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    cagcatctccacatctatct 204
              ||||||||||||||||||||
Sbjct: 101905 cagcatctccacatctatct 101886
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>dbj|AP006145.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT03H18, TM0262,
             complete sequence
          Length = 78589

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cctgttccagcatctccaca 197
             ||||||||||||||||||||
Sbjct: 59327 cctgttccagcatctccaca 59346


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,831,490
Number of Sequences: 3902068
Number of extensions: 5831490
Number of successful extensions: 117971
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117721
Number of HSP's gapped (non-prelim): 245
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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